RNA–Protein interactions for RNA: ENST00000567379.5

VPS9D1-206, Transcript of VPS9 domain containing 1, humanhuman

TSL 5

Gene VPS9D1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-206ENST00000567379 FAM83GA6ND36 823 aa14□□□□□ -0.17
VPS9D1-206ENST00000567379 NBPF6Q5VWK0 638 aa14□□□□□ -0.17
VPS9D1-206ENST00000567379 USHBP1Q8N6Y0 703 aa14□□□□□ -0.17
VPS9D1-206ENST00000567379 ZNF428Q96B54 188 aa14□□□□□ -0.17
VPS9D1-206ENST00000567379 NBPF4Q96M43 638 aa14□□□□□ -0.17
VPS9D1-206ENST00000567379 CRBNQ96SW2 442 aa14□□□□□ -0.17
VPS9D1-206ENST00000567379 COL16A1Q07092 1604 aaPredicted RBP14□□□□□ -0.17
VPS9D1-206ENST00000567379 RGPD2P0DJD1 1756 aa13.99□□□□□ -0.17
VPS9D1-206ENST00000567379 DCTN1Q14203 1278 aa13.99□□□□□ -0.17
VPS9D1-206ENST00000567379 PDE3AQ14432 1141 aa13.99□□□□□ -0.17
VPS9D1-206ENST00000567379 B4GALNT3Q6L9W6 998 aa13.99□□□□□ -0.17
VPS9D1-206ENST00000567379 CABLES1Q8TDN4 633 aa13.99□□□□□ -0.17
VPS9D1-206ENST00000567379 RGPD5Q99666 1765 aa13.99□□□□□ -0.17
VPS9D1-206ENST00000567379 CPDO75976 1380 aa13.98□□□□□ -0.17
VPS9D1-206ENST00000567379 GNAT3A8MTJ3 354 aa13.98□□□□□ -0.17
VPS9D1-206ENST00000567379 MCM10Q7L590 875 aa13.98□□□□□ -0.17
VPS9D1-206ENST00000567379 LRRC59Q96AG4 307 aaKnown RBP13.98□□□□□ -0.17
VPS9D1-206ENST00000567379 MBIPQ9NS73 344 aa13.98□□□□□ -0.17
VPS9D1-206ENST00000567379 NCAPD2Q15021 1401 aa13.98□□□□□ -0.17
VPS9D1-206ENST00000567379 CAMTA1Q9Y6Y1 1673 aa13.98□□□□□ -0.17
VPS9D1-206ENST00000567379 COL18A1P39060 1754 aa13.97□□□□□ -0.17
VPS9D1-206ENST00000567379 MS4A1P11836 297 aa13.97□□□□□ -0.17
VPS9D1-206ENST00000567379 HAP1P54257 671 aaPredicted RBP13.97□□□□□ -0.17
VPS9D1-206ENST00000567379 PLEKHO1Q53GL0 409 aaPredicted RBP13.97□□□□□ -0.17
VPS9D1-206ENST00000567379 C20orf194Q5TEA3 1177 aa13.97□□□□□ -0.17
VPS9D1-206ENST00000567379 AXIN2Q9Y2T1 843 aa13.97□□□□□ -0.17
VPS9D1-206ENST00000567379 MAP3K5Q99683 1374 aa13.96□□□□□ -0.17
VPS9D1-206ENST00000567379 ERBB3P21860 1342 aa13.96□□□□□ -0.17
VPS9D1-206ENST00000567379 FAM208AQ9UK61 1670 aaKnown RBP13.96□□□□□ -0.17
VPS9D1-206ENST00000567379 ALDH1L2Q3SY69 923 aa13.96□□□□□ -0.17
VPS9D1-206ENST00000567379 AMOTQ4VCS5 1084 aa13.96□□□□□ -0.17
VPS9D1-206ENST00000567379 FRAT1Q92837 279 aaPredicted RBP13.96□□□□□ -0.17
VPS9D1-206ENST00000567379 SMC4Q9NTJ3 1288 aa13.96□□□□□ -0.17
VPS9D1-206ENST00000567379 CHL1O00533 1208 aa13.95□□□□□ -0.18
VPS9D1-206ENST00000567379 CRB1P82279 1406 aa13.95□□□□□ -0.18
VPS9D1-206ENST00000567379 KIAA0232Q92628 1395 aa13.95□□□□□ -0.18
VPS9D1-206ENST00000567379 RGS12O14924 1447 aa13.94□□□□□ -0.18
VPS9D1-206ENST00000567379 CSB-PGBD3P0DP91 1061 aa13.94□□□□□ -0.18
VPS9D1-206ENST00000567379 ZKSCAN2Q63HK3 967 aa13.94□□□□□ -0.18
VPS9D1-206ENST00000567379 SSH1Q8WYL5 1049 aa13.94□□□□□ -0.18
VPS9D1-206ENST00000567379 BCL2L13Q9BXK5 485 aa13.94□□□□□ -0.18
VPS9D1-206ENST00000567379 NLRP2Q9NX02 1062 aa13.94□□□□□ -0.18
VPS9D1-206ENST00000567379 KIF16BQ96L93 1317 aa13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 IPO8O15397 1037 aaKnown RBP13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 VAMP4O75379 141 aa13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 CHRNA2Q15822 529 aa13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 TWISTNBQ3B726 338 aaPredicted RBP13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 PRDM11Q9NQV5 511 aa13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 LMO7Q8WWI1 1683 aa13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 LRRC37A3O60309 1634 aa13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 ABCA3Q99758 1704 aa13.93□□□□□ -0.18
VPS9D1-206ENST00000567379 AKAP4Q5JQC9 854 aa13.92□□□□□ -0.18
VPS9D1-206ENST00000567379 C1orf141Q5JVX7 400 aa13.92□□□□□ -0.18
VPS9D1-206ENST00000567379 ZNF530Q6P9A1 599 aaPredicted RBP13.92□□□□□ -0.18
VPS9D1-206ENST00000567379 RAPGEF4Q8WZA2 1011 aa13.92□□□□□ -0.18
VPS9D1-206ENST00000567379 BABAM1Q9NWV8 329 aa13.92□□□□□ -0.18
VPS9D1-206ENST00000567379 TSPYL4Q9UJ04 414 aa13.92□□□□□ -0.18
VPS9D1-206ENST00000567379 AHDC1Q5TGY3 1603 aaPredicted RBP13.92□□□□□ -0.18
VPS9D1-206ENST00000567379 TATP17735 454 aaPredicted RBP13.91□□□□□ -0.18
VPS9D1-206ENST00000567379 BRPF1P55201 1214 aaPredicted RBP13.91□□□□□ -0.18
VPS9D1-206ENST00000567379 AAMPQ13685 434 aa13.91□□□□□ -0.18
VPS9D1-206ENST00000567379 C8orf58Q8NAV2 365 aa13.91□□□□□ -0.18
VPS9D1-206ENST00000567379 PANK1Q8TE04 598 aa13.91□□□□□ -0.18
VPS9D1-206ENST00000567379 TAF7Q15545 349 aaPredicted RBP13.9□□□□□ -0.18
VPS9D1-206ENST00000567379 FTSJ3Q8IY81 847 aaKnown RBP13.9□□□□□ -0.18
VPS9D1-206ENST00000567379 TSPYL6Q8N831 410 aa13.9□□□□□ -0.18
VPS9D1-206ENST00000567379 IL17REQ8NFR9 667 aa13.9□□□□□ -0.18
VPS9D1-206ENST00000567379 PLEKHG2Q9H7P9 1386 aa13.9□□□□□ -0.18
VPS9D1-206ENST00000567379 NUTM2BA6NNL0 878 aaPredicted RBP13.89□□□□□ -0.19
VPS9D1-206ENST00000567379 NUTM2EB1AL46 878 aaPredicted RBP13.89□□□□□ -0.19
VPS9D1-206ENST00000567379 ELL2O00472 640 aaPredicted RBP13.89□□□□□ -0.19
VPS9D1-206ENST00000567379 NUTM2AQ8IVF1 878 aaPredicted RBP13.89□□□□□ -0.19
VPS9D1-206ENST00000567379 DZIP1LQ8IYY4 767 aaKnown RBP13.89□□□□□ -0.19
VPS9D1-206ENST00000567379 NOB1Q9ULX3 412 aaKnown RBP13.89□□□□□ -0.19
VPS9D1-206ENST00000567379 COG6Q9Y2V7 657 aa13.89□□□□□ -0.19
VPS9D1-206ENST00000567379 ATF7IPQ6VMQ6 1270 aa13.88□□□□□ -0.19
VPS9D1-206ENST00000567379 MRPL50Q8N5N7 158 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-206ENST00000567379 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.88□□□□□ -0.19
VPS9D1-206ENST00000567379 SPG7Q9UQ90 795 aa13.88□□□□□ -0.19
VPS9D1-206ENST00000567379 AFF2P51816 1311 aa13.88□□□□□ -0.19
VPS9D1-206ENST00000567379 CEMIPQ8WUJ3 1361 aa13.87□□□□□ -0.19
VPS9D1-206ENST00000567379 ARHGAP45Q92619 1136 aa13.87□□□□□ -0.19
VPS9D1-206ENST00000567379 CLUAP1Q96AJ1 413 aa13.87□□□□□ -0.19
VPS9D1-206ENST00000567379 MIS18AQ9NYP9 233 aa13.87□□□□□ -0.19
VPS9D1-206ENST00000567379 OVOS2A0A0G2JMS6 1433 aa13.87□□□□□ -0.19
VPS9D1-206ENST00000567379 SOS1Q07889 1333 aaPredicted RBP13.87□□□□□ -0.19
VPS9D1-206ENST00000567379 WDR17Q8IZU2 1322 aa13.87□□□□□ -0.19
VPS9D1-206ENST00000567379 RNMTO43148 476 aaKnown RBP13.86□□□□□ -0.19
VPS9D1-206ENST00000567379 RLBP1P12271 317 aa13.86□□□□□ -0.19
VPS9D1-206ENST00000567379 TRIM27P14373 513 aa13.86□□□□□ -0.19
VPS9D1-206ENST00000567379 RBM6P78332 1123 aaKnown RBP13.86□□□□□ -0.19
VPS9D1-206ENST00000567379 TEFQ10587 303 aa13.86□□□□□ -0.19
VPS9D1-206ENST00000567379 EVA1CP58658 441 aa13.85□□□□□ -0.19
VPS9D1-206ENST00000567379 MVPQ14764 893 aaKnown RBP13.85□□□□□ -0.19
VPS9D1-206ENST00000567379 TOM1L2Q6ZVM7 507 aa13.85□□□□□ -0.19
VPS9D1-206ENST00000567379 LGR6Q9HBX8 967 aa13.85□□□□□ -0.19
VPS9D1-206ENST00000567379 TNNQ9UQP3 1299 aa13.85□□□□□ -0.19
VPS9D1-206ENST00000567379 COL22A1Q8NFW1 1626 aaPredicted RBP13.85□□□□□ -0.19
VPS9D1-206ENST00000567379 COL5A2P05997 1499 aaPredicted RBP13.85□□□□□ -0.19
VPS9D1-206ENST00000567379 VIRMAQ69YN4 1812 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms