RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 NME9Q86XW9 330 aa24.13■■□□□ 1.45
CDH3-205ENST00000566808 MSH5O43196 834 aa24.12■■□□□ 1.45
CDH3-205ENST00000566808 PRIM1P49642 420 aaKnown RBP24.12■■□□□ 1.45
CDH3-205ENST00000566808 CCNL1Q9UK58 526 aaPredicted RBP24.12■■□□□ 1.45
CDH3-205ENST00000566808 TAF1LQ8IZX4 1826 aa24.12■■□□□ 1.45
CDH3-205ENST00000566808 EDC4Q6P2E9 1401 aaKnown RBP24.11■■□□□ 1.45
CDH3-205ENST00000566808 CD2APQ9Y5K6 639 aa24.11■■□□□ 1.45
CDH3-205ENST00000566808 ROCK2O75116 1388 aaKnown RBP24.11■■□□□ 1.45
CDH3-205ENST00000566808 COL23A1Q86Y22 540 aaPredicted RBP24.1■■□□□ 1.45
CDH3-205ENST00000566808 RGPD2P0DJD1 1756 aa24.08■■□□□ 1.45
CDH3-205ENST00000566808 USP47Q96K76 1375 aa24.08■■□□□ 1.45
CDH3-205ENST00000566808 MSL1Q68DK7 614 aa24.08■■□□□ 1.45
CDH3-205ENST00000566808 ZNF526Q8TF50 670 aaPredicted RBP24.07■■□□□ 1.44
CDH3-205ENST00000566808 MEGF6O75095 1541 aa24.06■■□□□ 1.44
CDH3-205ENST00000566808 IP6K1Q92551 441 aa24.06■■□□□ 1.44
CDH3-205ENST00000566808 CICQ96RK0 1608 aaPredicted RBP24.05■■□□□ 1.44
CDH3-205ENST00000566808 HDGFL2Q7Z4V5 671 aaPredicted RBP24.03■■□□□ 1.44
CDH3-205ENST00000566808 L3MBTL2Q969R5 705 aa24.03■■□□□ 1.44
CDH3-205ENST00000566808 TOGARAM1Q9Y4F4 1720 aa24.03■■□□□ 1.44
CDH3-205ENST00000566808 C4BP0C0L5 1744 aa24.02■■□□□ 1.44
CDH3-205ENST00000566808 HMGB2P26583 209 aaKnown RBP24.02■■□□□ 1.44
CDH3-205ENST00000566808 FLAD1Q8NFF5 587 aa24.02■■□□□ 1.44
CDH3-205ENST00000566808 LTV1Q96GA3 475 aaPredicted RBP24.02■■□□□ 1.44
CDH3-205ENST00000566808 UBR3Q6ZT12 1888 aa24.01■■□□□ 1.43
CDH3-205ENST00000566808 ZCRB1Q8TBF4 217 aaKnown RBP24.01■■□□□ 1.43
CDH3-205ENST00000566808 A0A1W2PP64 1363 aa24■■□□□ 1.43
CDH3-205ENST00000566808 KIF3CO14782 793 aa23.98■■□□□ 1.43
CDH3-205ENST00000566808 IGSF1Q8N6C5 1336 aa23.98■■□□□ 1.43
CDH3-205ENST00000566808 APLP1P51693 650 aa23.97■■□□□ 1.43
CDH3-205ENST00000566808 TMC1Q8TDI8 760 aa23.97■■□□□ 1.43
CDH3-205ENST00000566808 NSD3Q9BZ95 1437 aa23.96■■□□□ 1.43
CDH3-205ENST00000566808 TERF2IPQ9NYB0 399 aa23.96■■□□□ 1.43
CDH3-205ENST00000566808 RTL1A6NKG5 1358 aa23.95■■□□□ 1.42
CDH3-205ENST00000566808 PALLDQ8WX93 1383 aa23.95■■□□□ 1.42
CDH3-205ENST00000566808 CGNL1Q0VF96 1302 aa23.95■■□□□ 1.42
CDH3-205ENST00000566808 ITGB4P16144 1822 aa23.94■■□□□ 1.42
CDH3-205ENST00000566808 MAP3K19Q56UN5 1328 aa23.94■■□□□ 1.42
CDH3-205ENST00000566808 WDR90Q96KV7 1748 aa23.94■■□□□ 1.42
CDH3-205ENST00000566808 HOXC9P31274 260 aa23.94■■□□□ 1.42
CDH3-205ENST00000566808 KIF13BQ9NQT8 1826 aa23.92■■□□□ 1.42
CDH3-205ENST00000566808 SLC12A5Q9H2X9 1139 aa23.92■■□□□ 1.42
CDH3-205ENST00000566808 AMPHP49418 695 aa23.9■■□□□ 1.42
CDH3-205ENST00000566808 AK7Q96M32 723 aa23.9■■□□□ 1.42
CDH3-205ENST00000566808 SMG6Q86US8 1419 aaKnown RBP23.9■■□□□ 1.42
CDH3-205ENST00000566808 KIAA1551Q9HCM1 1747 aa23.89■■□□□ 1.41
CDH3-205ENST00000566808 PCDH11XQ9BZA7 1347 aa23.88■■□□□ 1.41
CDH3-205ENST00000566808 PCDH11YQ9BZA8 1340 aa23.88■■□□□ 1.41
CDH3-205ENST00000566808 COG3Q96JB2 828 aa23.88■■□□□ 1.41
CDH3-205ENST00000566808 WWC3Q9ULE0 1092 aa23.88■■□□□ 1.41
CDH3-205ENST00000566808 MAP2P11137 1827 aaKnown RBP23.87■■□□□ 1.41
CDH3-205ENST00000566808 DNAJC5GQ8N7S2 189 aa23.87■■□□□ 1.41
CDH3-205ENST00000566808 RAPGEF4Q8WZA2 1011 aa23.87■■□□□ 1.41
CDH3-205ENST00000566808 PKD1L3Q7Z443 1732 aa23.87■■□□□ 1.41
CDH3-205ENST00000566808 TOMM70O94826 608 aa23.86■■□□□ 1.41
CDH3-205ENST00000566808 PUS7Q96PZ0 661 aaKnown RBP23.85■■□□□ 1.41
CDH3-205ENST00000566808 NBPF6Q5VWK0 638 aa23.84■■□□□ 1.41
CDH3-205ENST00000566808 AMIGO3Q86WK7 504 aa23.84■■□□□ 1.41
CDH3-205ENST00000566808 SMARCC1Q92922 1105 aaPredicted RBP23.84■■□□□ 1.41
CDH3-205ENST00000566808 NBPF4Q96M43 638 aa23.84■■□□□ 1.41
CDH3-205ENST00000566808 N4BP2Q86UW6 1770 aaPredicted RBP23.83■■□□□ 1.41
CDH3-205ENST00000566808 PXDNLA1KZ92 1463 aa23.83■■□□□ 1.41
CDH3-205ENST00000566808 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.83■■□□□ 1.41
CDH3-205ENST00000566808 PHF14O94880 888 aa23.83■■□□□ 1.41
CDH3-205ENST00000566808 SSFA2P28290 1259 aa23.83■■□□□ 1.41
CDH3-205ENST00000566808 TATP17735 454 aaPredicted RBP23.82■■□□□ 1.4
CDH3-205ENST00000566808 MPRIPQ6WCQ1 1025 aa23.82■■□□□ 1.4
CDH3-205ENST00000566808 USHBP1Q8N6Y0 703 aa23.82■■□□□ 1.4
CDH3-205ENST00000566808 BRCA1P38398 1863 aaKnown RBP23.81■■□□□ 1.4
CDH3-205ENST00000566808 PCNTO95613 3336 aa23.81■■□□□ 1.4
CDH3-205ENST00000566808 CARD11Q9BXL7 1154 aa23.8■■□□□ 1.4
CDH3-205ENST00000566808 FBLN1P23142 703 aa23.78■■□□□ 1.4
CDH3-205ENST00000566808 SIN3AQ96ST3 1273 aa23.78■■□□□ 1.4
CDH3-205ENST00000566808 KIF20BQ96Q89 1820 aa23.77■■□□□ 1.4
CDH3-205ENST00000566808 ARFGEF1Q9Y6D6 1849 aa23.77■■□□□ 1.4
CDH3-205ENST00000566808 C10orf71Q711Q0 1435 aa23.76■■□□□ 1.39
CDH3-205ENST00000566808 RRS1Q15050 365 aaKnown RBP23.76■■□□□ 1.39
CDH3-205ENST00000566808 INSRP06213 1382 aa23.76■■□□□ 1.39
CDH3-205ENST00000566808 CYP27B1O15528 508 aa23.75■■□□□ 1.39
CDH3-205ENST00000566808 SMIM5Q71RC9 77 aa23.75■■□□□ 1.39
CDH3-205ENST00000566808 RBM46Q8TBY0 533 aaKnown RBP23.75■■□□□ 1.39
CDH3-205ENST00000566808 PLEKHG2Q9H7P9 1386 aa23.75■■□□□ 1.39
CDH3-205ENST00000566808 KLRG1Q96E93 195 aa23.74■■□□□ 1.39
CDH3-205ENST00000566808 NMRK2Q9NPI5 230 aa23.74■■□□□ 1.39
CDH3-205ENST00000566808 LOC102724428A0A0B4J2F2 783 aa23.73■■□□□ 1.39
CDH3-205ENST00000566808 SIK1P57059 783 aa23.73■■□□□ 1.39
CDH3-205ENST00000566808 JMYQ8N9B5 988 aa23.73■■□□□ 1.39
CDH3-205ENST00000566808 LINC00116Q8NCU8 138 aa23.73■■□□□ 1.39
CDH3-205ENST00000566808 FLT4P35916 1363 aa23.73■■□□□ 1.39
CDH3-205ENST00000566808 KIF24Q5T7B8 1368 aa23.73■■□□□ 1.39
CDH3-205ENST00000566808 TNRC6CQ9HCJ0 1690 aaKnown RBP23.73■■□□□ 1.39
CDH3-205ENST00000566808 C4AP0C0L4 1744 aa23.73■■□□□ 1.39
CDH3-205ENST00000566808 GNPATO15228 680 aa23.72■■□□□ 1.39
CDH3-205ENST00000566808 MMP10P09238 476 aa23.72■■□□□ 1.39
CDH3-205ENST00000566808 TGFB2P61812 414 aa23.72■■□□□ 1.39
CDH3-205ENST00000566808 NEUROD1Q13562 356 aa23.72■■□□□ 1.39
CDH3-205ENST00000566808 COL13A1Q5TAT6 717 aaPredicted RBP23.72■■□□□ 1.39
CDH3-205ENST00000566808 PIGBQ92521 554 aa23.72■■□□□ 1.39
CDH3-205ENST00000566808 BCS1LQ9Y276 419 aa23.72■■□□□ 1.39
CDH3-205ENST00000566808 NCAPD2Q15021 1401 aa23.7■■□□□ 1.38
CDH3-205ENST00000566808 C16orf71Q8IYS4 520 aaPredicted RBP23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms