RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 POLKQ9UBT6 870 aa25.3■■□□□ 1.64
CLN3-221ENST00000566057 BTAF1O14981 1849 aa25.28■■□□□ 1.64
CLN3-221ENST00000566057 PROM2Q8N271 834 aa25.28■■□□□ 1.64
CLN3-221ENST00000566057 ZCRB1Q8TBF4 217 aaKnown RBP25.27■■□□□ 1.64
CLN3-221ENST00000566057 WASHC2AQ641Q2 1341 aa25.27■■□□□ 1.64
CLN3-221ENST00000566057 NBPF14Q5TI25 921 aa25.24■■□□□ 1.63
CLN3-221ENST00000566057 RAPGEF4Q8WZA2 1011 aa25.23■■□□□ 1.63
CLN3-221ENST00000566057 KNSTRNQ9Y448 316 aa25.23■■□□□ 1.63
CLN3-221ENST00000566057 LRP5O75197 1615 aa25.23■■□□□ 1.63
CLN3-221ENST00000566057 NSD2O96028 1365 aa25.22■■□□□ 1.63
CLN3-221ENST00000566057 DOT1LQ8TEK3 1739 aa25.22■■□□□ 1.63
CLN3-221ENST00000566057 TATP17735 454 aaPredicted RBP25.2■■□□□ 1.62
CLN3-221ENST00000566057 TXNRD1Q16881 649 aa25.2■■□□□ 1.62
CLN3-221ENST00000566057 MORC1Q86VD1 984 aa25.2■■□□□ 1.62
CLN3-221ENST00000566057 EYA1Q99502 592 aa25.2■■□□□ 1.62
CLN3-221ENST00000566057 NCAPD2Q15021 1401 aa25.2■■□□□ 1.62
CLN3-221ENST00000566057 AMER1Q5JTC6 1135 aaPredicted RBP25.18■■□□□ 1.62
CLN3-221ENST00000566057 ANO8Q9HCE9 1232 aaPredicted RBP25.18■■□□□ 1.62
CLN3-221ENST00000566057 PRIM1P49642 420 aaKnown RBP25.17■■□□□ 1.62
CLN3-221ENST00000566057 EIF4A2Q14240 407 aaKnown RBP25.17■■□□□ 1.62
CLN3-221ENST00000566057 PKD1L3Q7Z443 1732 aa25.17■■□□□ 1.62
CLN3-221ENST00000566057 PER1O15534 1290 aaPredicted RBP25.16■■□□□ 1.62
CLN3-221ENST00000566057 SYTL4Q96C24 671 aaPredicted RBP25.14■■□□□ 1.62
CLN3-221ENST00000566057 CYP27B1O15528 508 aa25.12■■□□□ 1.61
CLN3-221ENST00000566057 PCDH11XQ9BZA7 1347 aa25.12■■□□□ 1.61
CLN3-221ENST00000566057 PCDH11YQ9BZA8 1340 aa25.12■■□□□ 1.61
CLN3-221ENST00000566057 ITGB4P16144 1822 aa25.1■■□□□ 1.61
CLN3-221ENST00000566057 CASZ1Q86V15 1759 aa25.1■■□□□ 1.61
CLN3-221ENST00000566057 LY75O60449 1722 aa25.09■■□□□ 1.61
CLN3-221ENST00000566057 PDGFDQ9GZP0 370 aaPredicted RBP25.09■■□□□ 1.61
CLN3-221ENST00000566057 LRRC4BQ9NT99 713 aa25.09■■□□□ 1.61
CLN3-221ENST00000566057 TOGARAM1Q9Y4F4 1720 aa25.09■■□□□ 1.61
CLN3-221ENST00000566057 PAPPAQ13219 1627 aa25.08■■□□□ 1.61
CLN3-221ENST00000566057 SLC15A2Q16348 729 aa25.07■■□□□ 1.6
CLN3-221ENST00000566057 IGSF1Q8N6C5 1336 aa25.07■■□□□ 1.6
CLN3-221ENST00000566057 CC2D1BQ5T0F9 858 aaKnown RBP25.06■■□□□ 1.6
CLN3-221ENST00000566057 STK32BQ9NY57 414 aa25.06■■□□□ 1.6
CLN3-221ENST00000566057 SPG7Q9UQ90 795 aa25.06■■□□□ 1.6
CLN3-221ENST00000566057 KCNQ4P56696 695 aa25.04■■□□□ 1.6
CLN3-221ENST00000566057 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.04■■□□□ 1.6
CLN3-221ENST00000566057 MTHFSP49914 203 aa25.02■■□□□ 1.6
CLN3-221ENST00000566057 NKX1-1Q15270 411 aaPredicted RBP25.02■■□□□ 1.6
CLN3-221ENST00000566057 SLC27A3Q5K4L6 730 aa25.02■■□□□ 1.6
CLN3-221ENST00000566057 IL13P35225 146 aa25.01■■□□□ 1.59
CLN3-221ENST00000566057 CNGB1Q14028 1251 aaPredicted RBP25.01■■□□□ 1.59
CLN3-221ENST00000566057 ZNF827Q17R98 1081 aa25.01■■□□□ 1.59
CLN3-221ENST00000566057 MPRIPQ6WCQ1 1025 aa25.01■■□□□ 1.59
CLN3-221ENST00000566057 AEBP1Q8IUX7 1158 aa25■■□□□ 1.59
CLN3-221ENST00000566057 SPON1Q9HCB6 807 aa25■■□□□ 1.59
CLN3-221ENST00000566057 PHKG2P15735 406 aa24.99■■□□□ 1.59
CLN3-221ENST00000566057 NPC1L1Q9UHC9 1359 aa24.99■■□□□ 1.59
CLN3-221ENST00000566057 TUBGCP6Q96RT7 1819 aa24.98■■□□□ 1.59
CLN3-221ENST00000566057 IFNL2Q8IZJ0 200 aa24.98■■□□□ 1.59
CLN3-221ENST00000566057 ZBTB7AO95365 584 aa24.97■■□□□ 1.59
CLN3-221ENST00000566057 AKT1S1Q96B36 256 aa24.97■■□□□ 1.59
CLN3-221ENST00000566057 QSER1Q2KHR3 1735 aa24.96■■□□□ 1.59
CLN3-221ENST00000566057 SULT6B1Q6IMI4 303 aa24.96■■□□□ 1.59
CLN3-221ENST00000566057 PIGBQ92521 554 aa24.96■■□□□ 1.59
CLN3-221ENST00000566057 PLEKHG2Q9H7P9 1386 aa24.95■■□□□ 1.59
CLN3-221ENST00000566057 CCNL1Q9UK58 526 aaPredicted RBP24.95■■□□□ 1.58
CLN3-221ENST00000566057 TAF1LQ8IZX4 1826 aa24.95■■□□□ 1.58
CLN3-221ENST00000566057 PLEKHO1Q53GL0 409 aaPredicted RBP24.93■■□□□ 1.58
CLN3-221ENST00000566057 ATF5Q9Y2D1 282 aaPredicted RBP24.93■■□□□ 1.58
CLN3-221ENST00000566057 C5P01031 1676 aa24.93■■□□□ 1.58
CLN3-221ENST00000566057 KDRP35968 1356 aa24.93■■□□□ 1.58
CLN3-221ENST00000566057 PALLDQ8WX93 1383 aa24.92■■□□□ 1.58
CLN3-221ENST00000566057 PTGER2P43116 358 aa24.9■■□□□ 1.58
CLN3-221ENST00000566057 AMOTQ4VCS5 1084 aa24.9■■□□□ 1.58
CLN3-221ENST00000566057 ZNF530Q6P9A1 599 aaPredicted RBP24.89■■□□□ 1.58
CLN3-221ENST00000566057 TMOD3Q9NYL9 352 aa24.89■■□□□ 1.58
CLN3-221ENST00000566057 PPP1R1BQ9UD71 204 aaPredicted RBP24.89■■□□□ 1.58
CLN3-221ENST00000566057 DIAPH1O60610 1272 aaKnown RBP24.88■■□□□ 1.57
CLN3-221ENST00000566057 SMARCC1Q92922 1105 aaPredicted RBP24.88■■□□□ 1.57
CLN3-221ENST00000566057 MTFR1LQ9H019 292 aa24.88■■□□□ 1.57
CLN3-221ENST00000566057 TFCP2L1Q9NZI6 479 aa24.88■■□□□ 1.57
CLN3-221ENST00000566057 PNPLA7Q6ZV29 1317 aa24.87■■□□□ 1.57
CLN3-221ENST00000566057 HMOX1P09601 288 aa24.87■■□□□ 1.57
CLN3-221ENST00000566057 ASAP1Q9ULH1 1129 aa24.87■■□□□ 1.57
CLN3-221ENST00000566057 COL3A1P02461 1466 aaPredicted RBP24.87■■□□□ 1.57
CLN3-221ENST00000566057 DCAF5Q96JK2 942 aa24.86■■□□□ 1.57
CLN3-221ENST00000566057 KDM6AO15550 1401 aaPredicted RBP24.86■■□□□ 1.57
CLN3-221ENST00000566057 VIRMAQ69YN4 1812 aaKnown RBP24.85■■□□□ 1.57
CLN3-221ENST00000566057 HSP90AB1P08238 724 aaKnown RBP24.85■■□□□ 1.57
CLN3-221ENST00000566057 SGIP1Q9BQI5 828 aa24.85■■□□□ 1.57
CLN3-221ENST00000566057 ERVV-2B6SEH9 535 aa24.84■■□□□ 1.57
CLN3-221ENST00000566057 SCN11AQ9UI33 1791 aa24.83■■□□□ 1.57
CLN3-221ENST00000566057 ATG3Q9NT62 314 aa24.83■■□□□ 1.57
CLN3-221ENST00000566057 C4BP0C0L5 1744 aa24.83■■□□□ 1.57
CLN3-221ENST00000566057 COL24A1Q17RW2 1714 aa24.83■■□□□ 1.57
CLN3-221ENST00000566057 C1orf141Q5JVX7 400 aa24.82■■□□□ 1.56
CLN3-221ENST00000566057 LOC102724428A0A0B4J2F2 783 aa24.81■■□□□ 1.56
CLN3-221ENST00000566057 SIK1P57059 783 aa24.81■■□□□ 1.56
CLN3-221ENST00000566057 COL23A1Q86Y22 540 aaPredicted RBP24.8■■□□□ 1.56
CLN3-221ENST00000566057 SLC16A10Q8TF71 515 aa24.8■■□□□ 1.56
CLN3-221ENST00000566057 UBR3Q6ZT12 1888 aa24.79■■□□□ 1.56
CLN3-221ENST00000566057 PPP2R1AP30153 589 aa24.78■■□□□ 1.56
CLN3-221ENST00000566057 CABP4P57796 275 aa24.78■■□□□ 1.56
CLN3-221ENST00000566057 ITPK1Q13572 414 aa24.78■■□□□ 1.56
CLN3-221ENST00000566057 U2SURPO15042 1029 aaKnown RBP24.77■■□□□ 1.56
CLN3-221ENST00000566057 LINC00116Q8NCU8 138 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms