RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 HMOX1P09601 288 aa16.81■□□□□ 0.28
SF3B3-206ENST00000565990 RAPGEF4Q8WZA2 1011 aa16.81■□□□□ 0.28
SF3B3-206ENST00000565990 PLEKHF1Q96S99 279 aa16.81■□□□□ 0.28
SF3B3-206ENST00000565990 TATP17735 454 aaPredicted RBP16.8■□□□□ 0.28
SF3B3-206ENST00000565990 SEPT12Q8IYM1 358 aa16.8■□□□□ 0.28
SF3B3-206ENST00000565990 PNNQ9H307 717 aaKnown RBP16.8■□□□□ 0.28
SF3B3-206ENST00000565990 OVOS2A0A0G2JMS6 1433 aa16.79■□□□□ 0.28
SF3B3-206ENST00000565990 EXOC5O00471 708 aa16.79■□□□□ 0.28
SF3B3-206ENST00000565990 MEGF6O75095 1541 aa16.79■□□□□ 0.28
SF3B3-206ENST00000565990 BRWD3Q6RI45 1802 aa16.78■□□□□ 0.28
SF3B3-206ENST00000565990 WDR43Q15061 677 aaKnown RBP eCLIP16.78■□□□□ 0.28
SF3B3-206ENST00000565990 AMOTQ4VCS5 1084 aa16.78■□□□□ 0.28
SF3B3-206ENST00000565990 PKD1L3Q7Z443 1732 aa16.77■□□□□ 0.28
SF3B3-206ENST00000565990 SHANK3Q9BYB0 1731 aa16.77■□□□□ 0.28
SF3B3-206ENST00000565990 PRKAR2BP31323 418 aa16.77■□□□□ 0.28
SF3B3-206ENST00000565990 DDB1Q16531 1140 aa16.77■□□□□ 0.28
SF3B3-206ENST00000565990 ZCRB1Q8TBF4 217 aaKnown RBP16.77■□□□□ 0.28
SF3B3-206ENST00000565990 PHACTR3Q96KR7 559 aa16.77■□□□□ 0.28
SF3B3-206ENST00000565990 PLEKHO1Q53GL0 409 aaPredicted RBP16.76■□□□□ 0.27
SF3B3-206ENST00000565990 SPG7Q9UQ90 795 aa16.76■□□□□ 0.27
SF3B3-206ENST00000565990 LRRC37A3O60309 1634 aa16.75■□□□□ 0.27
SF3B3-206ENST00000565990 NKX1-1Q15270 411 aaPredicted RBP16.74■□□□□ 0.27
SF3B3-206ENST00000565990 MTHFSDQ2M296 383 aaKnown RBP16.74■□□□□ 0.27
SF3B3-206ENST00000565990 RUNDC1Q96C34 613 aa16.74■□□□□ 0.27
SF3B3-206ENST00000565990 RGS12O14924 1447 aa16.73■□□□□ 0.27
SF3B3-206ENST00000565990 MARCH10Q8NA82 808 aaPredicted RBP16.73■□□□□ 0.27
SF3B3-206ENST00000565990 TNS2Q63HR2 1409 aa16.72■□□□□ 0.27
SF3B3-206ENST00000565990 CYP27B1O15528 508 aa16.72■□□□□ 0.27
SF3B3-206ENST00000565990 PDE3BQ13370 1112 aa16.72■□□□□ 0.27
SF3B3-206ENST00000565990 KRT27Q7Z3Y8 459 aa16.72■□□□□ 0.27
SF3B3-206ENST00000565990 IFNL2Q8IZJ0 200 aa16.71■□□□□ 0.27
SF3B3-206ENST00000565990 FAM9BQ8IZU0 186 aa16.71■□□□□ 0.27
SF3B3-206ENST00000565990 PCDH11XQ9BZA7 1347 aa16.7■□□□□ 0.26
SF3B3-206ENST00000565990 PCDH11YQ9BZA8 1340 aa16.7■□□□□ 0.26
SF3B3-206ENST00000565990 BCL9O00512 1426 aa16.7■□□□□ 0.26
SF3B3-206ENST00000565990 DLG5Q8TDM6 1919 aa16.7■□□□□ 0.26
SF3B3-206ENST00000565990 PHKG2P15735 406 aa16.7■□□□□ 0.26
SF3B3-206ENST00000565990 AKAP4Q5JQC9 854 aa16.7■□□□□ 0.26
SF3B3-206ENST00000565990 GAS2L2Q8NHY3 880 aa16.7■□□□□ 0.26
SF3B3-206ENST00000565990 A0A0G2JS52 829 aa16.69■□□□□ 0.26
SF3B3-206ENST00000565990 MYT1Q01538 1121 aa16.69■□□□□ 0.26
SF3B3-206ENST00000565990 NCBP3Q53F19 620 aaKnown RBP16.69■□□□□ 0.26
SF3B3-206ENST00000565990 CCDC146Q8IYE0 955 aa16.69■□□□□ 0.26
SF3B3-206ENST00000565990 DDX54Q8TDD1 881 aaKnown RBP16.69■□□□□ 0.26
SF3B3-206ENST00000565990 YTHDC1Q96MU7 727 aaKnown RBP16.69■□□□□ 0.26
SF3B3-206ENST00000565990 VIRMAQ69YN4 1812 aaKnown RBP16.68■□□□□ 0.26
SF3B3-206ENST00000565990 NEFMP07197 916 aa16.68■□□□□ 0.26
SF3B3-206ENST00000565990 HTATSF1O43719 755 aaKnown RBP16.67■□□□□ 0.26
SF3B3-206ENST00000565990 TMPOP42166 694 aaKnown RBP16.67■□□□□ 0.26
SF3B3-206ENST00000565990 NFE2L2Q16236 605 aa16.67■□□□□ 0.26
SF3B3-206ENST00000565990 ZNF530Q6P9A1 599 aaPredicted RBP16.67■□□□□ 0.26
SF3B3-206ENST00000565990 SBF2Q86WG5 1849 aa16.67■□□□□ 0.26
SF3B3-206ENST00000565990 MAPK8IP3Q9UPT6 1336 aa16.67■□□□□ 0.26
SF3B3-206ENST00000565990 ADAMTS7Q9UKP4 1686 aa16.66■□□□□ 0.26
SF3B3-206ENST00000565990 HSP90AB1P08238 724 aaKnown RBP16.66■□□□□ 0.26
SF3B3-206ENST00000565990 FAM196AQ6ZSG2 479 aa16.66■□□□□ 0.26
SF3B3-206ENST00000565990 SCN11AQ9UI33 1791 aa16.66■□□□□ 0.26
SF3B3-206ENST00000565990 GNAT3A8MTJ3 354 aa16.65■□□□□ 0.26
SF3B3-206ENST00000565990 APAF1O14727 1248 aa16.65■□□□□ 0.26
SF3B3-206ENST00000565990 C1orf141Q5JVX7 400 aa16.65■□□□□ 0.26
SF3B3-206ENST00000565990 DCAF5Q96JK2 942 aa16.65■□□□□ 0.26
SF3B3-206ENST00000565990 RIPK4P57078 832 aa16.64■□□□□ 0.25
SF3B3-206ENST00000565990 IL17REQ8NFR9 667 aa16.64■□□□□ 0.25
SF3B3-206ENST00000565990 LGR6Q9HBX8 967 aa16.64■□□□□ 0.25
SF3B3-206ENST00000565990 KAT6BQ8WYB5 2073 aa16.64■□□□□ 0.25
SF3B3-206ENST00000565990 FAM182BQ5T319 152 aa16.63■□□□□ 0.25
SF3B3-206ENST00000565990 ITGB4P16144 1822 aa16.63■□□□□ 0.25
SF3B3-206ENST00000565990 MAP3K5Q99683 1374 aa16.63■□□□□ 0.25
SF3B3-206ENST00000565990 ERVV-2B6SEH9 535 aa16.62■□□□□ 0.25
SF3B3-206ENST00000565990 MPRIPQ6WCQ1 1025 aa16.62■□□□□ 0.25
SF3B3-206ENST00000565990 NGEFQ8N5V2 710 aa16.62■□□□□ 0.25
SF3B3-206ENST00000565990 TRIM35Q9UPQ4 493 aa16.62■□□□□ 0.25
SF3B3-206ENST00000565990 RNMTO43148 476 aaKnown RBP16.61■□□□□ 0.25
SF3B3-206ENST00000565990 CCDC27Q2M243 656 aa16.61■□□□□ 0.25
SF3B3-206ENST00000565990 ILDR2Q71H61 639 aa16.61■□□□□ 0.25
SF3B3-206ENST00000565990 CEMIPQ8WUJ3 1361 aa16.61■□□□□ 0.25
SF3B3-206ENST00000565990 KDM6AO15550 1401 aaPredicted RBP16.61■□□□□ 0.25
SF3B3-206ENST00000565990 EP400Q96L91 3159 aa16.6■□□□□ 0.25
SF3B3-206ENST00000565990 TOGARAM1Q9Y4F4 1720 aa16.6■□□□□ 0.25
SF3B3-206ENST00000565990 PRIM1P49642 420 aaKnown RBP16.59■□□□□ 0.25
SF3B3-206ENST00000565990 LMOD3Q0VAK6 560 aa16.59■□□□□ 0.25
SF3B3-206ENST00000565990 RRP7AQ9Y3A4 280 aaKnown RBP16.59■□□□□ 0.25
SF3B3-206ENST00000565990 SIPA1L3O60292 1781 aaPredicted RBP16.59■□□□□ 0.25
SF3B3-206ENST00000565990 NEUROD2Q15784 382 aa16.58■□□□□ 0.24
SF3B3-206ENST00000565990 MCM10Q7L590 875 aa16.58■□□□□ 0.24
SF3B3-206ENST00000565990 RTF1Q92541 710 aaKnown RBP16.58■□□□□ 0.24
SF3B3-206ENST00000565990 BCL11BQ9C0K0 894 aaPredicted RBP16.58■□□□□ 0.24
SF3B3-206ENST00000565990 DOT1LQ8TEK3 1739 aa16.58■□□□□ 0.24
SF3B3-206ENST00000565990 NHSQ6T4R5 1651 aa16.57■□□□□ 0.24
SF3B3-206ENST00000565990 KCNQ2O43526 872 aa16.57■□□□□ 0.24
SF3B3-206ENST00000565990 NFATC2IPQ8NCF5 419 aa16.57■□□□□ 0.24
SF3B3-206ENST00000565990 SLC52A2Q9HAB3 445 aa16.57■□□□□ 0.24
SF3B3-206ENST00000565990 DCTN1Q14203 1278 aa16.56■□□□□ 0.24
SF3B3-206ENST00000565990 CCDC125Q86Z20 511 aa16.56■□□□□ 0.24
SF3B3-206ENST00000565990 WWC1Q8IX03 1113 aa16.56■□□□□ 0.24
SF3B3-206ENST00000565990 PIGBQ92521 554 aa16.56■□□□□ 0.24
SF3B3-206ENST00000565990 MRC1P22897 1456 aa16.55■□□□□ 0.24
SF3B3-206ENST00000565990 CABP4P57796 275 aa16.55■□□□□ 0.24
SF3B3-206ENST00000565990 PTF1AQ7RTS3 328 aa16.55■□□□□ 0.24
SF3B3-206ENST00000565990 ACSBG1Q96GR2 724 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms