RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PRIM1P49642 420 aaKnown RBP23.84■■□□□ 1.41
CLN3-216ENST00000565316 ZNF827Q17R98 1081 aa23.84■■□□□ 1.41
CLN3-216ENST00000565316 SMG6Q86US8 1419 aaKnown RBP23.84■■□□□ 1.41
CLN3-216ENST00000565316 KAT6BQ8WYB5 2073 aa23.84■■□□□ 1.41
CLN3-216ENST00000565316 HSP90AB2PQ58FF8 381 aa23.84■■□□□ 1.41
CLN3-216ENST00000565316 AKT1S1Q96B36 256 aa23.84■■□□□ 1.41
CLN3-216ENST00000565316 MYOM1P52179 1685 aa23.83■■□□□ 1.41
CLN3-216ENST00000565316 SHANK3Q9BYB0 1731 aa23.83■■□□□ 1.41
CLN3-216ENST00000565316 NSD2O96028 1365 aa23.83■■□□□ 1.41
CLN3-216ENST00000565316 FLT4P35916 1363 aa23.83■■□□□ 1.41
CLN3-216ENST00000565316 KIF20BQ96Q89 1820 aa23.83■■□□□ 1.41
CLN3-216ENST00000565316 USHBP1Q8N6Y0 703 aa23.82■■□□□ 1.4
CLN3-216ENST00000565316 NSD3Q9BZ95 1437 aa23.81■■□□□ 1.4
CLN3-216ENST00000565316 SYTL4Q96C24 671 aaPredicted RBP23.81■■□□□ 1.4
CLN3-216ENST00000565316 DCAF8L1A6NGE4 600 aa23.8■■□□□ 1.4
CLN3-216ENST00000565316 RAPGEF4Q8WZA2 1011 aa23.8■■□□□ 1.4
CLN3-216ENST00000565316 DOT1LQ8TEK3 1739 aa23.78■■□□□ 1.4
CLN3-216ENST00000565316 TATP17735 454 aaPredicted RBP23.78■■□□□ 1.4
CLN3-216ENST00000565316 YY1P25490 414 aa23.78■■□□□ 1.4
CLN3-216ENST00000565316 PCGF6Q9BYE7 350 aa23.78■■□□□ 1.4
CLN3-216ENST00000565316 SYT17Q9BSW7 474 aa23.77■■□□□ 1.4
CLN3-216ENST00000565316 FHDC1Q9C0D6 1143 aaPredicted RBP23.77■■□□□ 1.4
CLN3-216ENST00000565316 EMILIN1Q9Y6C2 1016 aa23.77■■□□□ 1.4
CLN3-216ENST00000565316 SLC16A10Q8TF71 515 aa23.76■■□□□ 1.39
CLN3-216ENST00000565316 LY75O60449 1722 aa23.75■■□□□ 1.39
CLN3-216ENST00000565316 QSER1Q2KHR3 1735 aa23.74■■□□□ 1.39
CLN3-216ENST00000565316 KCNQ4P56696 695 aa23.74■■□□□ 1.39
CLN3-216ENST00000565316 ARXQ96QS3 562 aa23.74■■□□□ 1.39
CLN3-216ENST00000565316 NCAPD2Q15021 1401 aa23.74■■□□□ 1.39
CLN3-216ENST00000565316 MAP3K5Q99683 1374 aa23.73■■□□□ 1.39
CLN3-216ENST00000565316 PNPLA7Q6ZV29 1317 aa23.73■■□□□ 1.39
CLN3-216ENST00000565316 PCDH11XQ9BZA7 1347 aa23.73■■□□□ 1.39
CLN3-216ENST00000565316 PCDH11YQ9BZA8 1340 aa23.73■■□□□ 1.39
CLN3-216ENST00000565316 WASHC2AQ641Q2 1341 aa23.71■■□□□ 1.39
CLN3-216ENST00000565316 CYP27B1O15528 508 aa23.71■■□□□ 1.39
CLN3-216ENST00000565316 TFCP2L1Q9NZI6 479 aa23.71■■□□□ 1.39
CLN3-216ENST00000565316 CCNL1Q9UK58 526 aaPredicted RBP23.71■■□□□ 1.39
CLN3-216ENST00000565316 ANKRD26Q9UPS8 1709 aa23.71■■□□□ 1.39
CLN3-216ENST00000565316 COL24A1Q17RW2 1714 aa23.68■■□□□ 1.38
CLN3-216ENST00000565316 POLKQ9UBT6 870 aa23.68■■□□□ 1.38
CLN3-216ENST00000565316 PPM1GO15355 546 aaPredicted RBP23.67■■□□□ 1.38
CLN3-216ENST00000565316 EIF4G2P78344 907 aaKnown RBP eCLIP23.66■■□□□ 1.381e-9■■■■□ 22.4
CLN3-216ENST00000565316 NKX1-1Q15270 411 aaPredicted RBP23.66■■□□□ 1.38
CLN3-216ENST00000565316 TUBGCP6Q96RT7 1819 aa23.66■■□□□ 1.38
CLN3-216ENST00000565316 UTRNP46939 3433 aa23.66■■□□□ 1.38
CLN3-216ENST00000565316 PKD1L3Q7Z443 1732 aa23.66■■□□□ 1.38
CLN3-216ENST00000565316 EYA1Q99502 592 aa23.65■■□□□ 1.38
CLN3-216ENST00000565316 HSPA5P11021 654 aaKnown RBP23.64■■□□□ 1.38
CLN3-216ENST00000565316 POLD1P28340 1107 aa23.64■■□□□ 1.38
CLN3-216ENST00000565316 HMGB2P26583 209 aaKnown RBP23.63■■□□□ 1.37
CLN3-216ENST00000565316 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.63■■□□□ 1.37
CLN3-216ENST00000565316 MPRIPQ6WCQ1 1025 aa23.62■■□□□ 1.37
CLN3-216ENST00000565316 POLR3GLQ9BT43 218 aa23.62■■□□□ 1.37
CLN3-216ENST00000565316 SPG7Q9UQ90 795 aa23.62■■□□□ 1.37
CLN3-216ENST00000565316 MAP2P11137 1827 aaKnown RBP23.62■■□□□ 1.37
CLN3-216ENST00000565316 PALLDQ8WX93 1383 aa23.62■■□□□ 1.37
CLN3-216ENST00000565316 COL23A1Q86Y22 540 aaPredicted RBP23.61■■□□□ 1.37
CLN3-216ENST00000565316 TOGARAM1Q9Y4F4 1720 aa23.61■■□□□ 1.37
CLN3-216ENST00000565316 SMARCC1Q92922 1105 aaPredicted RBP23.6■■□□□ 1.37
CLN3-216ENST00000565316 PIGBQ92521 554 aa23.59■■□□□ 1.37
CLN3-216ENST00000565316 PANK3Q9H999 370 aa23.59■■□□□ 1.37
CLN3-216ENST00000565316 EIF4A2Q14240 407 aaKnown RBP23.59■■□□□ 1.37
CLN3-216ENST00000565316 PLEKHG2Q9H7P9 1386 aa23.58■■□□□ 1.37
CLN3-216ENST00000565316 C5P01031 1676 aa23.58■■□□□ 1.37
CLN3-216ENST00000565316 TNNT2P45379 298 aaPredicted RBP23.57■■□□□ 1.36
CLN3-216ENST00000565316 CCER1Q8TC90 406 aaPredicted RBP23.57■■□□□ 1.36
CLN3-216ENST00000565316 ITGB4P16144 1822 aa23.56■■□□□ 1.36
CLN3-216ENST00000565316 FLAD1Q8NFF5 587 aa23.56■■□□□ 1.36
CLN3-216ENST00000565316 MSH5O43196 834 aa23.55■■□□□ 1.36
CLN3-216ENST00000565316 PHKG2P15735 406 aa23.55■■□□□ 1.36
CLN3-216ENST00000565316 IFNL2Q8IZJ0 200 aa23.54■■□□□ 1.36
CLN3-216ENST00000565316 TAF1LQ8IZX4 1826 aa23.54■■□□□ 1.36
CLN3-216ENST00000565316 IGSF1Q8N6C5 1336 aa23.53■■□□□ 1.36
CLN3-216ENST00000565316 GPR162Q16538 588 aa23.52■■□□□ 1.36
CLN3-216ENST00000565316 KLHL34Q8N239 644 aa23.52■■□□□ 1.36
CLN3-216ENST00000565316 ZNF784Q8NCA9 323 aaPredicted RBP23.52■■□□□ 1.36
CLN3-216ENST00000565316 NLGN2Q8NFZ4 835 aa23.52■■□□□ 1.36
CLN3-216ENST00000565316 TMOD3Q9NYL9 352 aa23.51■■□□□ 1.35
CLN3-216ENST00000565316 C4BP0C0L5 1744 aa23.51■■□□□ 1.35
CLN3-216ENST00000565316 LOC102724428A0A0B4J2F2 783 aa23.5■■□□□ 1.35
CLN3-216ENST00000565316 SIK1P57059 783 aa23.5■■□□□ 1.35
CLN3-216ENST00000565316 MSL1Q68DK7 614 aa23.5■■□□□ 1.35
CLN3-216ENST00000565316 AMIGO3Q86WK7 504 aa23.49■■□□□ 1.35
CLN3-216ENST00000565316 ASAP1Q9ULH1 1129 aa23.49■■□□□ 1.35
CLN3-216ENST00000565316 CHD4Q14839 1912 aa23.49■■□□□ 1.35
CLN3-216ENST00000565316 GOLGB1Q14789 3259 aaKnown RBP23.48■■□□□ 1.35
CLN3-216ENST00000565316 AK7Q96M32 723 aa23.48■■□□□ 1.35
CLN3-216ENST00000565316 MORC1Q86VD1 984 aa23.47■■□□□ 1.35
CLN3-216ENST00000565316 LINC00116Q8NCU8 138 aa23.47■■□□□ 1.35
CLN3-216ENST00000565316 ERVV-2B6SEH9 535 aa23.45■■□□□ 1.34
CLN3-216ENST00000565316 ITPK1Q13572 414 aa23.45■■□□□ 1.34
CLN3-216ENST00000565316 ATG3Q9NT62 314 aa23.45■■□□□ 1.34
CLN3-216ENST00000565316 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.44■■□□□ 1.34
CLN3-216ENST00000565316 SSFA2P28290 1259 aa23.44■■□□□ 1.34
CLN3-216ENST00000565316 PLEKHO1Q53GL0 409 aaPredicted RBP23.44■■□□□ 1.34
CLN3-216ENST00000565316 DCAF5Q96JK2 942 aa23.44■■□□□ 1.34
CLN3-216ENST00000565316 KNSTRNQ9Y448 316 aa23.44■■□□□ 1.34
CLN3-216ENST00000565316 CD2APQ9Y5K6 639 aa23.44■■□□□ 1.34
CLN3-216ENST00000565316 UBR3Q6ZT12 1888 aa23.44■■□□□ 1.34
CLN3-216ENST00000565316 HSP90AB1P08238 724 aaKnown RBP23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms