RNA–Protein interactions for RNA: ENST00000565038.1

PALB2-203, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 344 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-203ENST00000565038 LINC00528Q8N1L1 170 aa8.59□□□□□ -1.03
PALB2-203ENST00000565038 NFATC2IPQ8NCF5 419 aa8.59□□□□□ -1.03
PALB2-203ENST00000565038 ZFP42Q96MM3 310 aa8.59□□□□□ -1.03
PALB2-203ENST00000565038 OSBPL3Q9H4L5 887 aa8.59□□□□□ -1.03
PALB2-203ENST00000565038 USP17L5A8MUK1 530 aa8.58□□□□□ -1.04
PALB2-203ENST00000565038 ATP9BO43861 1147 aa8.58□□□□□ -1.04
PALB2-203ENST00000565038 USP4Q13107 963 aa8.58□□□□□ -1.04
PALB2-203ENST00000565038 NCOA4Q13772 614 aa8.58□□□□□ -1.04
PALB2-203ENST00000565038 SCARF1Q14162 830 aa8.58□□□□□ -1.04
PALB2-203ENST00000565038 KDF1Q8NAX2 398 aaPredicted RBP8.58□□□□□ -1.04
PALB2-203ENST00000565038 TSEN34Q9BSV6 310 aaKnown RBP8.58□□□□□ -1.04
PALB2-203ENST00000565038 PALM3A6NDB9 673 aaPredicted RBP8.57□□□□□ -1.04
PALB2-203ENST00000565038 PTGIRP43119 386 aa8.57□□□□□ -1.04
PALB2-203ENST00000565038 TRIM52Q96A61 297 aa8.57□□□□□ -1.04
PALB2-203ENST00000565038 PPP1R12CQ9BZL4 782 aa8.57□□□□□ -1.04
PALB2-203ENST00000565038 USP17L3A6NCW0 530 aa8.56□□□□□ -1.04
PALB2-203ENST00000565038 USP17L4A6NCW7 530 aa8.56□□□□□ -1.04
PALB2-203ENST00000565038 ATP5J2-PTCD1G3V325 749 aa8.56□□□□□ -1.04
PALB2-203ENST00000565038 SUPT5HO00267 1087 aaKnown RBP8.56□□□□□ -1.04
PALB2-203ENST00000565038 EML3Q32P44 896 aa8.56□□□□□ -1.04
PALB2-203ENST00000565038 USP17L2Q6R6M4 530 aa8.56□□□□□ -1.04
PALB2-203ENST00000565038 USP17L1Q7RTZ2 530 aa8.56□□□□□ -1.04
PALB2-203ENST00000565038 CYP2U1Q7Z449 544 aa8.55□□□□□ -1.04
PALB2-203ENST00000565038 SIRT1Q96EB6 747 aa8.55□□□□□ -1.04
PALB2-203ENST00000565038 INSM2Q96T92 566 aaPredicted RBP8.55□□□□□ -1.04
PALB2-203ENST00000565038 C1orf115Q9H7X2 142 aa8.55□□□□□ -1.04
PALB2-203ENST00000565038 MAFBQ9Y5Q3 323 aaPredicted RBP8.55□□□□□ -1.04
PALB2-203ENST00000565038 STAU1O95793 577 aaKnown RBP8.54□□□□□ -1.04
PALB2-203ENST00000565038 LMOD1P29536 600 aaPredicted RBP8.54□□□□□ -1.04
PALB2-203ENST00000565038 ARHGEF10LQ9HCE6 1279 aa8.54□□□□□ -1.04
PALB2-203ENST00000565038 RAB6BQ9NRW1 208 aa8.54□□□□□ -1.04
PALB2-203ENST00000565038 A0A1W2PRU2 124 aa8.53□□□□□ -1.04
PALB2-203ENST00000565038 C11orf95C9JLR9 678 aaPredicted RBP8.53□□□□□ -1.04
PALB2-203ENST00000565038 MEN1O00255 615 aa8.53□□□□□ -1.04
PALB2-203ENST00000565038 SPINT1O43278 529 aa8.53□□□□□ -1.04
PALB2-203ENST00000565038 SNRPBP14678 240 aaKnown RBP8.53□□□□□ -1.04
PALB2-203ENST00000565038 ZNF787Q6DD87 383 aa8.53□□□□□ -1.04
PALB2-203ENST00000565038 PLEKHM2Q8IWE5 1019 aa8.53□□□□□ -1.04
PALB2-203ENST00000565038 TRIM47Q96LD4 638 aa8.53□□□□□ -1.04
PALB2-203ENST00000565038 SENP2Q9HC62 589 aa8.53□□□□□ -1.04
PALB2-203ENST00000565038 NOD1Q9Y239 953 aa8.53□□□□□ -1.04
PALB2-203ENST00000565038 SOBPA7XYQ1 873 aa8.52□□□□□ -1.05
PALB2-203ENST00000565038 LZTS3O60299 673 aaPredicted RBP8.52□□□□□ -1.05
PALB2-203ENST00000565038 RFX1P22670 979 aa8.52□□□□□ -1.05
PALB2-203ENST00000565038 CTSOP43234 321 aaPredicted RBP8.52□□□□□ -1.05
PALB2-203ENST00000565038 POLMQ9NP87 494 aaPredicted RBP8.52□□□□□ -1.05
PALB2-203ENST00000565038 MKRN1Q9UHC7 482 aaKnown RBP8.52□□□□□ -1.05
PALB2-203ENST00000565038 FIGNL2A6NMB9 653 aa8.51□□□□□ -1.05
PALB2-203ENST00000565038 GNRH1P01148 92 aa8.51□□□□□ -1.05
PALB2-203ENST00000565038 GTF2IP78347 998 aa8.51□□□□□ -1.05
PALB2-203ENST00000565038 CFAP70Q5T0N1 1121 aa8.51□□□□□ -1.05
PALB2-203ENST00000565038 KIFC2Q96AC6 838 aa8.51□□□□□ -1.05
PALB2-203ENST00000565038 CCDC97Q96F63 343 aaPredicted RBP8.51□□□□□ -1.05
PALB2-203ENST00000565038 PCDHGA11Q9Y5H2 935 aa8.51□□□□□ -1.05
PALB2-203ENST00000565038 TTLL8A6PVC2 850 aa8.5□□□□□ -1.05
PALB2-203ENST00000565038 PSME1Q06323 249 aa8.5□□□□□ -1.05
PALB2-203ENST00000565038 CCDC82Q8N4S0 544 aa8.5□□□□□ -1.05
PALB2-203ENST00000565038 SOS2Q07890 1332 aaPredicted RBP8.5□□□□□ -1.05
PALB2-203ENST00000565038 IL2RAP01589 272 aa8.49□□□□□ -1.05
PALB2-203ENST00000565038 CDCA8Q53HL2 280 aa8.49□□□□□ -1.05
PALB2-203ENST00000565038 ETNK1Q9HBU6 452 aa8.49□□□□□ -1.05
PALB2-203ENST00000565038 MAN1A2O60476 641 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 SCNN1DP51172 638 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 CLDN10P78369 228 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 CLN3Q13286 438 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 FOXD4L5Q5VV16 416 aaPredicted RBP8.48□□□□□ -1.05
PALB2-203ENST00000565038 TRIM50Q86XT4 487 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 OGFOD1Q8N543 542 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 CNKSR1Q969H4 720 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 NLRP3Q96P20 1036 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 DNMT3LQ9UJW3 386 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 SERPINA10Q9UK55 444 aa8.48□□□□□ -1.05
PALB2-203ENST00000565038 ZBTB7BO15156 539 aaPredicted RBP8.47□□□□□ -1.05
PALB2-203ENST00000565038 GDF10P55107 478 aa8.47□□□□□ -1.05
PALB2-203ENST00000565038 ESCO1Q5FWF5 840 aa8.47□□□□□ -1.05
PALB2-203ENST00000565038 KANK4Q5T7N3 995 aaPredicted RBP8.47□□□□□ -1.05
PALB2-203ENST00000565038 ZNF594Q96JF6 807 aaPredicted RBP8.47□□□□□ -1.05
PALB2-203ENST00000565038 VRTNQ9H8Y1 702 aa8.47□□□□□ -1.05
PALB2-203ENST00000565038 KIAA1024Q9UPX6 916 aa8.47□□□□□ -1.05
PALB2-203ENST00000565038 RASA1P20936 1047 aa8.46□□□□□ -1.06
PALB2-203ENST00000565038 RNF217Q8TC41 542 aa8.46□□□□□ -1.06
PALB2-203ENST00000565038 XAGE2Q96GT9 111 aa8.46□□□□□ -1.06
PALB2-203ENST00000565038 ESYT1Q9BSJ8 1104 aa8.46□□□□□ -1.06
PALB2-203ENST00000565038 DNAAF2Q9NVR5 837 aaKnown RBP8.46□□□□□ -1.06
PALB2-203ENST00000565038 SERTAD1Q9UHV2 236 aa8.46□□□□□ -1.06
PALB2-203ENST00000565038 TMEM229AB2RXF0 380 aa8.45□□□□□ -1.06
PALB2-203ENST00000565038 RNF144AP50876 292 aaPredicted RBP8.45□□□□□ -1.06
PALB2-203ENST00000565038 ATP1A2P50993 1020 aa8.45□□□□□ -1.06
PALB2-203ENST00000565038 CENPCQ03188 943 aa8.45□□□□□ -1.06
PALB2-203ENST00000565038 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.45□□□□□ -1.06
PALB2-203ENST00000565038 TPCN2Q8NHX9 752 aa8.45□□□□□ -1.06
PALB2-203ENST00000565038 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.44□□□□□ -1.06
PALB2-203ENST00000565038 INHAP05111 366 aa8.44□□□□□ -1.06
PALB2-203ENST00000565038 CRTC2Q53ET0 693 aaPredicted RBP8.44□□□□□ -1.06
PALB2-203ENST00000565038 SLC27A3Q5K4L6 730 aa8.44□□□□□ -1.06
PALB2-203ENST00000565038 CCDC102BQ68D86 513 aa8.44□□□□□ -1.06
PALB2-203ENST00000565038 LARP1Q6PKG0 1096 aaKnown RBP8.44□□□□□ -1.06
PALB2-203ENST00000565038 PRICKLE2Q7Z3G6 844 aa8.44□□□□□ -1.06
PALB2-203ENST00000565038 ARID3AQ99856 593 aa8.44□□□□□ -1.06
PALB2-203ENST00000565038 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.43□□□□□ -1.062e-6■□□□□ 10.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms