RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 EMILIN1Q9Y6C2 1016 aa15.01□□□□□ -0.01
VPS39-208ENST00000564994 KIF24Q5T7B8 1368 aa15□□□□□ -0.01
VPS39-208ENST00000564994 SMG6Q86US8 1419 aaKnown RBP15□□□□□ -0.01
VPS39-208ENST00000564994 PAPPAQ13219 1627 aa14.99□□□□□ -0.01
VPS39-208ENST00000564994 PDGFDQ9GZP0 370 aaPredicted RBP14.99□□□□□ -0.01
VPS39-208ENST00000564994 CGNL1Q0VF96 1302 aa14.98□□□□□ -0.01
VPS39-208ENST00000564994 ZCRB1Q8TBF4 217 aaKnown RBP14.98□□□□□ -0.01
VPS39-208ENST00000564994 PANK3Q9H999 370 aa14.96□□□□□ -0.01
VPS39-208ENST00000564994 NSD2O96028 1365 aa14.96□□□□□ -0.02
VPS39-208ENST00000564994 LY75O60449 1722 aa14.95□□□□□ -0.02
VPS39-208ENST00000564994 NCAPD2Q15021 1401 aa14.95□□□□□ -0.02
VPS39-208ENST00000564994 PPM1GO15355 546 aaPredicted RBP14.95□□□□□ -0.02
VPS39-208ENST00000564994 PRIM1P49642 420 aaKnown RBP14.95□□□□□ -0.02
VPS39-208ENST00000564994 SLC15A2Q16348 729 aa14.95□□□□□ -0.02
VPS39-208ENST00000564994 RAPGEF4Q8WZA2 1011 aa14.95□□□□□ -0.02
VPS39-208ENST00000564994 STK32BQ9NY57 414 aa14.95□□□□□ -0.02
VPS39-208ENST00000564994 POLKQ9UBT6 870 aa14.95□□□□□ -0.02
VPS39-208ENST00000564994 PKD1L3Q7Z443 1732 aa14.95□□□□□ -0.02
VPS39-208ENST00000564994 WASHC2AQ641Q2 1341 aa14.94□□□□□ -0.02
VPS39-208ENST00000564994 SPON1Q9HCB6 807 aa14.94□□□□□ -0.02
VPS39-208ENST00000564994 LRRC4BQ9NT99 713 aa14.94□□□□□ -0.02
VPS39-208ENST00000564994 TOGARAM1Q9Y4F4 1720 aa14.93□□□□□ -0.02
VPS39-208ENST00000564994 TATP17735 454 aaPredicted RBP14.93□□□□□ -0.02
VPS39-208ENST00000564994 SYTL4Q96C24 671 aaPredicted RBP14.93□□□□□ -0.02
VPS39-208ENST00000564994 TUBGCP6Q96RT7 1819 aa14.92□□□□□ -0.02
VPS39-208ENST00000564994 TNNT2P45379 298 aaPredicted RBP14.92□□□□□ -0.02
VPS39-208ENST00000564994 ITGB4P16144 1822 aa14.92□□□□□ -0.02
VPS39-208ENST00000564994 ZBTB7AO95365 584 aa14.91□□□□□ -0.02
VPS39-208ENST00000564994 ZNF827Q17R98 1081 aa14.91□□□□□ -0.02
VPS39-208ENST00000564994 EYA1Q99502 592 aa14.91□□□□□ -0.02
VPS39-208ENST00000564994 QSER1Q2KHR3 1735 aa14.91□□□□□ -0.02
VPS39-208ENST00000564994 CYP27B1O15528 508 aa14.9□□□□□ -0.02
VPS39-208ENST00000564994 KCNQ4P56696 695 aa14.9□□□□□ -0.02
VPS39-208ENST00000564994 PCDH11XQ9BZA7 1347 aa14.9□□□□□ -0.02
VPS39-208ENST00000564994 PCDH11YQ9BZA8 1340 aa14.9□□□□□ -0.02
VPS39-208ENST00000564994 PTGER2P43116 358 aa14.89□□□□□ -0.03
VPS39-208ENST00000564994 EIF4A2Q14240 407 aaKnown RBP14.89□□□□□ -0.03
VPS39-208ENST00000564994 SLC27A3Q5K4L6 730 aa14.89□□□□□ -0.03
VPS39-208ENST00000564994 AKT1S1Q96B36 256 aa14.89□□□□□ -0.03
VPS39-208ENST00000564994 KIF7Q2M1P5 1343 aa14.89□□□□□ -0.03
VPS39-208ENST00000564994 PPP1R1BQ9UD71 204 aaPredicted RBP14.88□□□□□ -0.03
VPS39-208ENST00000564994 ATF5Q9Y2D1 282 aaPredicted RBP14.88□□□□□ -0.03
VPS39-208ENST00000564994 TAF1LQ8IZX4 1826 aa14.86□□□□□ -0.03
VPS39-208ENST00000564994 C5P01031 1676 aa14.85□□□□□ -0.03
VPS39-208ENST00000564994 MORC1Q86VD1 984 aa14.85□□□□□ -0.03
VPS39-208ENST00000564994 SGIP1Q9BQI5 828 aa14.85□□□□□ -0.03
VPS39-208ENST00000564994 MTFR1LQ9H019 292 aa14.85□□□□□ -0.03
VPS39-208ENST00000564994 COL24A1Q17RW2 1714 aa14.85□□□□□ -0.03
VPS39-208ENST00000564994 NKX1-1Q15270 411 aaPredicted RBP14.84□□□□□ -0.03
VPS39-208ENST00000564994 AMER1Q5JTC6 1135 aaPredicted RBP14.84□□□□□ -0.03
VPS39-208ENST00000564994 MPRIPQ6WCQ1 1025 aa14.84□□□□□ -0.03
VPS39-208ENST00000564994 CCNL1Q9UK58 526 aaPredicted RBP14.84□□□□□ -0.03
VPS39-208ENST00000564994 SPG7Q9UQ90 795 aa14.84□□□□□ -0.03
VPS39-208ENST00000564994 KNSTRNQ9Y448 316 aa14.84□□□□□ -0.03
VPS39-208ENST00000564994 PNPLA7Q6ZV29 1317 aa14.84□□□□□ -0.03
VPS39-208ENST00000564994 IGSF1Q8N6C5 1336 aa14.84□□□□□ -0.03
VPS39-208ENST00000564994 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.83□□□□□ -0.042e-8■■□□□ 13
VPS39-208ENST00000564994 UTRNP46939 3433 aa14.83□□□□□ -0.04
VPS39-208ENST00000564994 PALLDQ8WX93 1383 aa14.82□□□□□ -0.04
VPS39-208ENST00000564994 PER1O15534 1290 aaPredicted RBP14.81□□□□□ -0.04
VPS39-208ENST00000564994 PHKG2P15735 406 aa14.81□□□□□ -0.04
VPS39-208ENST00000564994 PIGBQ92521 554 aa14.81□□□□□ -0.04
VPS39-208ENST00000564994 IFNL2Q8IZJ0 200 aa14.8□□□□□ -0.04
VPS39-208ENST00000564994 TFCP2L1Q9NZI6 479 aa14.8□□□□□ -0.04
VPS39-208ENST00000564994 AEBP1Q8IUX7 1158 aa14.79□□□□□ -0.04
VPS39-208ENST00000564994 FHDC1Q9C0D6 1143 aaPredicted RBP14.79□□□□□ -0.04
VPS39-208ENST00000564994 PLEKHG2Q9H7P9 1386 aa14.79□□□□□ -0.04
VPS39-208ENST00000564994 C4BP0C0L5 1744 aa14.78□□□□□ -0.04
VPS39-208ENST00000564994 SLC16A10Q8TF71 515 aa14.78□□□□□ -0.04
VPS39-208ENST00000564994 IL13P35225 146 aa14.77□□□□□ -0.05
VPS39-208ENST00000564994 COL23A1Q86Y22 540 aaPredicted RBP14.77□□□□□ -0.05
VPS39-208ENST00000564994 SMARCC1Q92922 1105 aaPredicted RBP14.77□□□□□ -0.05
VPS39-208ENST00000564994 ARXQ96QS3 562 aa14.77□□□□□ -0.05
VPS39-208ENST00000564994 SYT17Q9BSW7 474 aa14.77□□□□□ -0.05
VPS39-208ENST00000564994 UBR3Q6ZT12 1888 aa14.77□□□□□ -0.05
VPS39-208ENST00000564994 TMOD3Q9NYL9 352 aa14.76□□□□□ -0.05
VPS39-208ENST00000564994 ASAP1Q9ULH1 1129 aa14.76□□□□□ -0.05
VPS39-208ENST00000564994 KDRP35968 1356 aa14.75□□□□□ -0.05
VPS39-208ENST00000564994 MTHFSP49914 203 aa14.75□□□□□ -0.05
VPS39-208ENST00000564994 CC2D1BQ5T0F9 858 aaKnown RBP14.75□□□□□ -0.05
VPS39-208ENST00000564994 SULT6B1Q6IMI4 303 aa14.75□□□□□ -0.05
VPS39-208ENST00000564994 AMIGO3Q86WK7 504 aa14.75□□□□□ -0.05
VPS39-208ENST00000564994 KDM6AO15550 1401 aaPredicted RBP14.75□□□□□ -0.05
VPS39-208ENST00000564994 GOLGB1Q14789 3259 aaKnown RBP14.74□□□□□ -0.05
VPS39-208ENST00000564994 PLEKHO1Q53GL0 409 aaPredicted RBP14.74□□□□□ -0.05
VPS39-208ENST00000564994 ATG3Q9NT62 314 aa14.74□□□□□ -0.05
VPS39-208ENST00000564994 MAP3K5Q99683 1374 aa14.73□□□□□ -0.05
VPS39-208ENST00000564994 VIRMAQ69YN4 1812 aaKnown RBP14.73□□□□□ -0.05
VPS39-208ENST00000564994 LOC102724428A0A0B4J2F2 783 aa14.73□□□□□ -0.05
VPS39-208ENST00000564994 SIK1P57059 783 aa14.73□□□□□ -0.05
VPS39-208ENST00000564994 ZNF530Q6P9A1 599 aaPredicted RBP14.73□□□□□ -0.05
VPS39-208ENST00000564994 SMIM5Q71RC9 77 aa14.73□□□□□ -0.05
VPS39-208ENST00000564994 SCN11AQ9UI33 1791 aa14.73□□□□□ -0.05
VPS39-208ENST00000564994 MSH5O43196 834 aa14.72□□□□□ -0.05
VPS39-208ENST00000564994 ITPK1Q13572 414 aa14.72□□□□□ -0.05
VPS39-208ENST00000564994 AMOTQ4VCS5 1084 aa14.72□□□□□ -0.05
VPS39-208ENST00000564994 LINC00116Q8NCU8 138 aa14.72□□□□□ -0.05
VPS39-208ENST00000564994 DCAF5Q96JK2 942 aa14.72□□□□□ -0.05
VPS39-208ENST00000564994 NPC1L1Q9UHC9 1359 aa14.72□□□□□ -0.05
VPS39-208ENST00000564994 ZNF831Q5JPB2 1677 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms