RNA–Protein interactions for RNA: ENST00000564676.5

CDH1-206, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-206ENST00000564676 PEAK1Q9H792 1746 aa13.53□□□□□ -0.24
CDH1-206ENST00000564676 OVOS2A0A0G2JMS6 1433 aa13.53□□□□□ -0.24
CDH1-206ENST00000564676 RGPD2P0DJD1 1756 aa13.53□□□□□ -0.24
CDH1-206ENST00000564676 EP400Q96L91 3159 aa13.53□□□□□ -0.24
CDH1-206ENST00000564676 RAPGEF4Q8WZA2 1011 aa13.52□□□□□ -0.25
CDH1-206ENST00000564676 KAT6BQ8WYB5 2073 aa13.52□□□□□ -0.25
CDH1-206ENST00000564676 TNS2Q63HR2 1409 aa13.51□□□□□ -0.25
CDH1-206ENST00000564676 APBA3O96018 575 aa13.51□□□□□ -0.25
CDH1-206ENST00000564676 EN1Q05925 392 aaPredicted RBP13.51□□□□□ -0.25
CDH1-206ENST00000564676 DDX54Q8TDD1 881 aaKnown RBP13.51□□□□□ -0.25
CDH1-206ENST00000564676 TATP17735 454 aaPredicted RBP13.5□□□□□ -0.25
CDH1-206ENST00000564676 RGPD1P0DJD0 1748 aa13.5□□□□□ -0.25
CDH1-206ENST00000564676 EIF4A2Q14240 407 aaKnown RBP13.49□□□□□ -0.25
CDH1-206ENST00000564676 ZCRB1Q8TBF4 217 aaKnown RBP13.49□□□□□ -0.25
CDH1-206ENST00000564676 EYA1Q99502 592 aa13.49□□□□□ -0.25
CDH1-206ENST00000564676 NPC1L1Q9UHC9 1359 aa13.48□□□□□ -0.25
CDH1-206ENST00000564676 MTHFSP49914 203 aa13.47□□□□□ -0.25
CDH1-206ENST00000564676 EZH2Q15910 746 aaKnown RBP13.47□□□□□ -0.25
CDH1-206ENST00000564676 ACSBG1Q96GR2 724 aa13.47□□□□□ -0.25
CDH1-206ENST00000564676 BCL11BQ9C0K0 894 aaPredicted RBP13.47□□□□□ -0.25
CDH1-206ENST00000564676 MEGF6O75095 1541 aa13.47□□□□□ -0.25
CDH1-206ENST00000564676 BCL9O00512 1426 aa13.47□□□□□ -0.25
CDH1-206ENST00000564676 TNS1Q9HBL0 1735 aaKnown RBP13.45□□□□□ -0.26
CDH1-206ENST00000564676 PTF1AQ7RTS3 328 aa13.45□□□□□ -0.26
CDH1-206ENST00000564676 CAMKK2Q96RR4 588 aa13.45□□□□□ -0.26
CDH1-206ENST00000564676 SBF2Q86WG5 1849 aa13.45□□□□□ -0.26
CDH1-206ENST00000564676 KCNQ2O43526 872 aa13.44□□□□□ -0.26
CDH1-206ENST00000564676 ZNF219Q9P2Y4 722 aaPredicted RBP13.43□□□□□ -0.26
CDH1-206ENST00000564676 SPG7Q9UQ90 795 aa13.43□□□□□ -0.26
CDH1-206ENST00000564676 IGSF1Q8N6C5 1336 aa13.42□□□□□ -0.26
CDH1-206ENST00000564676 PCDH11XQ9BZA7 1347 aa13.42□□□□□ -0.26
CDH1-206ENST00000564676 PCDH11YQ9BZA8 1340 aa13.42□□□□□ -0.26
CDH1-206ENST00000564676 NCAPD2Q15021 1401 aa13.42□□□□□ -0.26
CDH1-206ENST00000564676 PLSCR1O15162 318 aa13.42□□□□□ -0.26
CDH1-206ENST00000564676 IL13P35225 146 aa13.42□□□□□ -0.26
CDH1-206ENST00000564676 DDX10Q13206 875 aaKnown RBP13.42□□□□□ -0.26
CDH1-206ENST00000564676 SYTL4Q96C24 671 aaPredicted RBP13.42□□□□□ -0.26
CDH1-206ENST00000564676 PARD3Q8TEW0 1356 aa13.42□□□□□ -0.26
CDH1-206ENST00000564676 DIAPH1O60610 1272 aaKnown RBP13.41□□□□□ -0.26
CDH1-206ENST00000564676 SULT6B1Q6IMI4 303 aa13.41□□□□□ -0.26
CDH1-206ENST00000564676 CYP27B1O15528 508 aa13.4□□□□□ -0.26
CDH1-206ENST00000564676 PRIM1P49642 420 aaKnown RBP13.4□□□□□ -0.26
CDH1-206ENST00000564676 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.4□□□□□ -0.26
CDH1-206ENST00000564676 PLEKHO1Q53GL0 409 aaPredicted RBP13.39□□□□□ -0.27
CDH1-206ENST00000564676 NBPF14Q5TI25 921 aa13.39□□□□□ -0.27
CDH1-206ENST00000564676 AEBP1Q8IUX7 1158 aa13.39□□□□□ -0.27
CDH1-206ENST00000564676 CFAP53Q96M91 514 aa13.39□□□□□ -0.27
CDH1-206ENST00000564676 SHANK3Q9BYB0 1731 aa13.39□□□□□ -0.27
CDH1-206ENST00000564676 PPP2R1AP30153 589 aa13.38□□□□□ -0.27
CDH1-206ENST00000564676 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
CDH1-206ENST00000564676 NHSQ6T4R5 1651 aa13.37□□□□□ -0.27
CDH1-206ENST00000564676 PSDA5PKW4 1024 aaPredicted RBP13.37□□□□□ -0.27
CDH1-206ENST00000564676 U2SURPO15042 1029 aaKnown RBP13.37□□□□□ -0.27
CDH1-206ENST00000564676 TXNRD1Q16881 649 aa13.37□□□□□ -0.27
CDH1-206ENST00000564676 IFNL2Q8IZJ0 200 aa13.37□□□□□ -0.27
CDH1-206ENST00000564676 HMOX1P09601 288 aa13.36□□□□□ -0.27
CDH1-206ENST00000564676 PHKG2P15735 406 aa13.36□□□□□ -0.27
CDH1-206ENST00000564676 R3HDM1Q15032 1099 aaKnown RBP13.36□□□□□ -0.27
CDH1-206ENST00000564676 AMOTQ4VCS5 1084 aa13.36□□□□□ -0.27
CDH1-206ENST00000564676 PROM2Q8N271 834 aa13.36□□□□□ -0.27
CDH1-206ENST00000564676 PKD1L3Q7Z443 1732 aa13.36□□□□□ -0.27
CDH1-206ENST00000564676 BTAF1O14981 1849 aa13.35□□□□□ -0.27
CDH1-206ENST00000564676 NKX1-1Q15270 411 aaPredicted RBP13.35□□□□□ -0.27
CDH1-206ENST00000564676 ZNF530Q6P9A1 599 aaPredicted RBP13.35□□□□□ -0.27
CDH1-206ENST00000564676 MPRIPQ6WCQ1 1025 aa13.35□□□□□ -0.27
CDH1-206ENST00000564676 KDRP35968 1356 aa13.34□□□□□ -0.27
CDH1-206ENST00000564676 PLEKHG2Q9H7P9 1386 aa13.34□□□□□ -0.27
CDH1-206ENST00000564676 DOT1LQ8TEK3 1739 aa13.34□□□□□ -0.27
CDH1-206ENST00000564676 HSP90AB1P08238 724 aaKnown RBP13.34□□□□□ -0.27
CDH1-206ENST00000564676 C1orf141Q5JVX7 400 aa13.34□□□□□ -0.27
CDH1-206ENST00000564676 NUDCQ9Y266 331 aa13.34□□□□□ -0.27
CDH1-206ENST00000564676 RREB1Q92766 1687 aa13.33□□□□□ -0.28
CDH1-206ENST00000564676 RGPD3A6NKT7 1758 aaPredicted RBP13.32□□□□□ -0.28
CDH1-206ENST00000564676 RGPD4Q7Z3J3 1758 aa13.32□□□□□ -0.28
CDH1-206ENST00000564676 COL3A1P02461 1466 aaPredicted RBP13.32□□□□□ -0.28
CDH1-206ENST00000564676 RALBP1Q15311 655 aa13.32□□□□□ -0.28
CDH1-206ENST00000564676 STK32BQ9NY57 414 aa13.32□□□□□ -0.28
CDH1-206ENST00000564676 TMOD3Q9NYL9 352 aa13.32□□□□□ -0.28
CDH1-206ENST00000564676 NUP188Q5SRE5 1749 aa13.32□□□□□ -0.28
CDH1-206ENST00000564676 SLC27A3Q5K4L6 730 aa13.31□□□□□ -0.28
CDH1-206ENST00000564676 PIGBQ92521 554 aa13.31□□□□□ -0.28
CDH1-206ENST00000564676 DCAF5Q96JK2 942 aa13.31□□□□□ -0.28
CDH1-206ENST00000564676 ZNF316A6NFI3 1004 aaPredicted RBP13.3□□□□□ -0.28
CDH1-206ENST00000564676 U2AF1L5P0DN76 240 aaPredicted RBP13.3□□□□□ -0.28
CDH1-206ENST00000564676 U2AF1Q01081 240 aaKnown RBP eCLIP13.3□□□□□ -0.28
CDH1-206ENST00000564676 SMARCC1Q92922 1105 aaPredicted RBP13.3□□□□□ -0.28
CDH1-206ENST00000564676 ANO8Q9HCE9 1232 aaPredicted RBP13.3□□□□□ -0.28
CDH1-206ENST00000564676 CCNL1Q9UK58 526 aaPredicted RBP13.3□□□□□ -0.28
CDH1-206ENST00000564676 ERVV-2B6SEH9 535 aa13.29□□□□□ -0.28
CDH1-206ENST00000564676 KCNQ4P56696 695 aa13.29□□□□□ -0.28
CDH1-206ENST00000564676 AKAP4Q5JQC9 854 aa13.29□□□□□ -0.28
CDH1-206ENST00000564676 LRRC4BQ9NT99 713 aa13.29□□□□□ -0.28
CDH1-206ENST00000564676 ITGB4P16144 1822 aa13.29□□□□□ -0.28
CDH1-206ENST00000564676 CABP4P57796 275 aa13.28□□□□□ -0.28
CDH1-206ENST00000564676 SLC15A2Q16348 729 aa13.28□□□□□ -0.28
CDH1-206ENST00000564676 MTHFSDQ2M296 383 aaKnown RBP13.28□□□□□ -0.28
CDH1-206ENST00000564676 TOGARAM1Q9Y4F4 1720 aa13.27□□□□□ -0.28
CDH1-206ENST00000564676 ABCB7O75027 752 aa13.27□□□□□ -0.29
CDH1-206ENST00000564676 PRKAR2BP31323 418 aa13.27□□□□□ -0.29
CDH1-206ENST00000564676 PALLDQ8WX93 1383 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms