RNA–Protein interactions for RNA: ENST00000564409.1

SPG7-210, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 3

Gene SPG7, Length 717 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-210ENST00000564409 SHANK3Q9BYB0 1731 aa20.75■□□□□ 0.91
SPG7-210ENST00000564409 MEGF6O75095 1541 aa20.75■□□□□ 0.91
SPG7-210ENST00000564409 SLC27A3Q5K4L6 730 aa20.75■□□□□ 0.91
SPG7-210ENST00000564409 HSP90AB2PQ58FF8 381 aa20.74■□□□□ 0.91
SPG7-210ENST00000564409 ANKRD26Q9UPS8 1709 aa20.74■□□□□ 0.91
SPG7-210ENST00000564409 MAP2P11137 1827 aaKnown RBP20.74■□□□□ 0.91
SPG7-210ENST00000564409 TATP17735 454 aaPredicted RBP20.73■□□□□ 0.91
SPG7-210ENST00000564409 PAPPAQ13219 1627 aa20.73■□□□□ 0.91
SPG7-210ENST00000564409 DOT1LQ8TEK3 1739 aa20.73■□□□□ 0.91
SPG7-210ENST00000564409 HMGB2P26583 209 aaKnown RBP20.71■□□□□ 0.91
SPG7-210ENST00000564409 PRIM1P49642 420 aaKnown RBP20.7■□□□□ 0.9
SPG7-210ENST00000564409 MTFR1LQ9H019 292 aa20.7■□□□□ 0.9
SPG7-210ENST00000564409 WASHC2AQ641Q2 1341 aa20.7■□□□□ 0.9
SPG7-210ENST00000564409 PCDH11XQ9BZA7 1347 aa20.7■□□□□ 0.9
SPG7-210ENST00000564409 PCDH11YQ9BZA8 1340 aa20.7■□□□□ 0.9
SPG7-210ENST00000564409 DCAF8L1A6NGE4 600 aa20.69■□□□□ 0.9
SPG7-210ENST00000564409 HSPA5P11021 654 aaKnown RBP20.69■□□□□ 0.9
SPG7-210ENST00000564409 SYTL4Q96C24 671 aaPredicted RBP20.69■□□□□ 0.9
SPG7-210ENST00000564409 EMILIN1Q9Y6C2 1016 aa20.69■□□□□ 0.9
SPG7-210ENST00000564409 LY75O60449 1722 aa20.69■□□□□ 0.9
SPG7-210ENST00000564409 QSER1Q2KHR3 1735 aa20.69■□□□□ 0.9
SPG7-210ENST00000564409 USHBP1Q8N6Y0 703 aa20.68■□□□□ 0.9
SPG7-210ENST00000564409 PDGFDQ9GZP0 370 aaPredicted RBP20.68■□□□□ 0.9
SPG7-210ENST00000564409 LRRC4BQ9NT99 713 aa20.68■□□□□ 0.9
SPG7-210ENST00000564409 ZBTB7AO95365 584 aa20.67■□□□□ 0.9
SPG7-210ENST00000564409 POLR3GLQ9BT43 218 aa20.67■□□□□ 0.9
SPG7-210ENST00000564409 NCAPD2Q15021 1401 aa20.67■□□□□ 0.9
SPG7-210ENST00000564409 PTGER2P43116 358 aa20.66■□□□□ 0.9
SPG7-210ENST00000564409 NSD2O96028 1365 aa20.66■□□□□ 0.9
SPG7-210ENST00000564409 PKD1L3Q7Z443 1732 aa20.65■□□□□ 0.9
SPG7-210ENST00000564409 PPM1GO15355 546 aaPredicted RBP20.65■□□□□ 0.9
SPG7-210ENST00000564409 SLC16A10Q8TF71 515 aa20.65■□□□□ 0.9
SPG7-210ENST00000564409 PLEKHG2Q9H7P9 1386 aa20.64■□□□□ 0.89
SPG7-210ENST00000564409 AKT1S1Q96B36 256 aa20.64■□□□□ 0.89
SPG7-210ENST00000564409 POLKQ9UBT6 870 aa20.64■□□□□ 0.89
SPG7-210ENST00000564409 ATF5Q9Y2D1 282 aaPredicted RBP20.64■□□□□ 0.89
SPG7-210ENST00000564409 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.63■□□□□ 0.89
SPG7-210ENST00000564409 ZNF827Q17R98 1081 aa20.62■□□□□ 0.89
SPG7-210ENST00000564409 PANK3Q9H999 370 aa20.62■□□□□ 0.89
SPG7-210ENST00000564409 SPG7Q9UQ90 795 aa20.62■□□□□ 0.89
SPG7-210ENST00000564409 SGIP1Q9BQI5 828 aa20.61■□□□□ 0.89
SPG7-210ENST00000564409 CYP27B1O15528 508 aa20.6■□□□□ 0.89
SPG7-210ENST00000564409 CCNL1Q9UK58 526 aaPredicted RBP20.6■□□□□ 0.89
SPG7-210ENST00000564409 ITGB4P16144 1822 aa20.6■□□□□ 0.89
SPG7-210ENST00000564409 NKX1-1Q15270 411 aaPredicted RBP20.59■□□□□ 0.89
SPG7-210ENST00000564409 EYA1Q99502 592 aa20.59■□□□□ 0.89
SPG7-210ENST00000564409 TFCP2L1Q9NZI6 479 aa20.59■□□□□ 0.89
SPG7-210ENST00000564409 SMARCC1Q92922 1105 aaPredicted RBP20.58■□□□□ 0.89
SPG7-210ENST00000564409 COL24A1Q17RW2 1714 aa20.58■□□□□ 0.88
SPG7-210ENST00000564409 ARXQ96QS3 562 aa20.57■□□□□ 0.88
SPG7-210ENST00000564409 TUBGCP6Q96RT7 1819 aa20.57■□□□□ 0.88
SPG7-210ENST00000564409 MAP3K5Q99683 1374 aa20.57■□□□□ 0.88
SPG7-210ENST00000564409 PNPLA7Q6ZV29 1317 aa20.56■□□□□ 0.88
SPG7-210ENST00000564409 TNNT2P45379 298 aaPredicted RBP20.55■□□□□ 0.88
SPG7-210ENST00000564409 EIF4A2Q14240 407 aaKnown RBP20.55■□□□□ 0.88
SPG7-210ENST00000564409 MPRIPQ6WCQ1 1025 aa20.55■□□□□ 0.88
SPG7-210ENST00000564409 SYT17Q9BSW7 474 aa20.55■□□□□ 0.88
SPG7-210ENST00000564409 FHDC1Q9C0D6 1143 aaPredicted RBP20.55■□□□□ 0.88
SPG7-210ENST00000564409 KNSTRNQ9Y448 316 aa20.55■□□□□ 0.88
SPG7-210ENST00000564409 TAF1LQ8IZX4 1826 aa20.55■□□□□ 0.88
SPG7-210ENST00000564409 TOGARAM1Q9Y4F4 1720 aa20.54■□□□□ 0.88
SPG7-210ENST00000564409 C5P01031 1676 aa20.54■□□□□ 0.88
SPG7-210ENST00000564409 POLD1P28340 1107 aa20.53■□□□□ 0.88
SPG7-210ENST00000564409 KCNQ4P56696 695 aa20.53■□□□□ 0.88
SPG7-210ENST00000564409 MORC1Q86VD1 984 aa20.53■□□□□ 0.88
SPG7-210ENST00000564409 IFNL2Q8IZJ0 200 aa20.53■□□□□ 0.88
SPG7-210ENST00000564409 PALLDQ8WX93 1383 aa20.53■□□□□ 0.88
SPG7-210ENST00000564409 FLAD1Q8NFF5 587 aa20.52■□□□□ 0.88
SPG7-210ENST00000564409 IGSF1Q8N6C5 1336 aa20.52■□□□□ 0.87
SPG7-210ENST00000564409 YY1P25490 414 aa20.51■□□□□ 0.87
SPG7-210ENST00000564409 PHKG2P15735 406 aa20.49■□□□□ 0.87
SPG7-210ENST00000564409 PIGBQ92521 554 aa20.49■□□□□ 0.87
SPG7-210ENST00000564409 TMOD3Q9NYL9 352 aa20.49■□□□□ 0.87
SPG7-210ENST00000564409 HSP90AB1P08238 724 aaKnown RBP20.48■□□□□ 0.87
SPG7-210ENST00000564409 AMOTQ4VCS5 1084 aa20.47■□□□□ 0.87
SPG7-210ENST00000564409 KIF7Q2M1P5 1343 aa20.47■□□□□ 0.87
SPG7-210ENST00000564409 CHD4Q14839 1912 aa20.47■□□□□ 0.87
SPG7-210ENST00000564409 PLEKHO1Q53GL0 409 aaPredicted RBP20.46■□□□□ 0.87
SPG7-210ENST00000564409 COL23A1Q86Y22 540 aaPredicted RBP20.46■□□□□ 0.87
SPG7-210ENST00000564409 C4BP0C0L5 1744 aa20.46■□□□□ 0.87
SPG7-210ENST00000564409 ERVV-2B6SEH9 535 aa20.45■□□□□ 0.86
SPG7-210ENST00000564409 MSH5O43196 834 aa20.45■□□□□ 0.86
SPG7-210ENST00000564409 AMER1Q5JTC6 1135 aaPredicted RBP20.45■□□□□ 0.86
SPG7-210ENST00000564409 DCAF5Q96JK2 942 aa20.44■□□□□ 0.86
SPG7-210ENST00000564409 LOC102724428A0A0B4J2F2 783 aa20.43■□□□□ 0.86
SPG7-210ENST00000564409 SIK1P57059 783 aa20.43■□□□□ 0.86
SPG7-210ENST00000564409 AK7Q96M32 723 aa20.43■□□□□ 0.86
SPG7-210ENST00000564409 UBR3Q6ZT12 1888 aa20.43■□□□□ 0.86
SPG7-210ENST00000564409 ZNF831Q5JPB2 1677 aa20.42■□□□□ 0.86
SPG7-210ENST00000564409 KDRP35968 1356 aa20.41■□□□□ 0.86
SPG7-210ENST00000564409 SSFA2P28290 1259 aa20.4■□□□□ 0.86
SPG7-210ENST00000564409 ASAP1Q9ULH1 1129 aa20.4■□□□□ 0.86
SPG7-210ENST00000564409 PER1O15534 1290 aaPredicted RBP20.39■□□□□ 0.85
SPG7-210ENST00000564409 IL13P35225 146 aa20.39■□□□□ 0.85
SPG7-210ENST00000564409 C1orf141Q5JVX7 400 aa20.39■□□□□ 0.85
SPG7-210ENST00000564409 ZNF530Q6P9A1 599 aaPredicted RBP20.39■□□□□ 0.85
SPG7-210ENST00000564409 ATG3Q9NT62 314 aa20.39■□□□□ 0.85
SPG7-210ENST00000564409 NPC1L1Q9UHC9 1359 aa20.38■□□□□ 0.85
SPG7-210ENST00000564409 ATP6V1AP38606 617 aa20.37■□□□□ 0.85
SPG7-210ENST00000564409 GPR162Q16538 588 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms