RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 COL23A1Q86Y22 540 aaPredicted RBP10.46□□□□□ -0.73
VPS4A-203ENST00000564399 L3MBTL2Q969R5 705 aa10.46□□□□□ -0.73
VPS4A-203ENST00000564399 LY75O60449 1722 aa10.46□□□□□ -0.74
VPS4A-203ENST00000564399 GOLGB1Q14789 3259 aaKnown RBP10.45□□□□□ -0.74
VPS4A-203ENST00000564399 DOT1LQ8TEK3 1739 aa10.45□□□□□ -0.74
VPS4A-203ENST00000564399 ROCK2O75116 1388 aaKnown RBP10.45□□□□□ -0.74
VPS4A-203ENST00000564399 ANKRD36BQ8N2N9 1353 aa10.45□□□□□ -0.74
VPS4A-203ENST00000564399 USP47Q96K76 1375 aa10.44□□□□□ -0.74
VPS4A-203ENST00000564399 ZCRB1Q8TBF4 217 aaKnown RBP10.44□□□□□ -0.74
VPS4A-203ENST00000564399 IP6K1Q92551 441 aa10.44□□□□□ -0.74
VPS4A-203ENST00000564399 CD2APQ9Y5K6 639 aa10.44□□□□□ -0.74
VPS4A-203ENST00000564399 USP54Q70EL1 1684 aa10.44□□□□□ -0.74
VPS4A-203ENST00000564399 SBNO2Q9Y2G9 1366 aa10.43□□□□□ -0.74
VPS4A-203ENST00000564399 WWC3Q9ULE0 1092 aa10.43□□□□□ -0.74
VPS4A-203ENST00000564399 FAM208AQ9UK61 1670 aaKnown RBP10.43□□□□□ -0.74
VPS4A-203ENST00000564399 FLAD1Q8NFF5 587 aa10.42□□□□□ -0.74
VPS4A-203ENST00000564399 SLC12A5Q9H2X9 1139 aa10.42□□□□□ -0.74
VPS4A-203ENST00000564399 TERF2IPQ9NYB0 399 aa10.42□□□□□ -0.74
VPS4A-203ENST00000564399 RGPD2P0DJD1 1756 aa10.42□□□□□ -0.74
VPS4A-203ENST00000564399 NSD2O96028 1365 aa10.41□□□□□ -0.74
VPS4A-203ENST00000564399 HMGB2P26583 209 aaKnown RBP10.41□□□□□ -0.74
VPS4A-203ENST00000564399 AMPHP49418 695 aa10.41□□□□□ -0.74
VPS4A-203ENST00000564399 EDC4Q6P2E9 1401 aaKnown RBP10.41□□□□□ -0.74
VPS4A-203ENST00000564399 ADCY9O60503 1353 aa10.4□□□□□ -0.74
VPS4A-203ENST00000564399 CD163L1Q9NR16 1453 aa10.4□□□□□ -0.74
VPS4A-203ENST00000564399 IGSF1Q8N6C5 1336 aa10.39□□□□□ -0.75
VPS4A-203ENST00000564399 C5P01031 1676 aa10.39□□□□□ -0.75
VPS4A-203ENST00000564399 HOXC9P31274 260 aa10.39□□□□□ -0.75
VPS4A-203ENST00000564399 NEUROD1Q13562 356 aa10.39□□□□□ -0.75
VPS4A-203ENST00000564399 COG3Q96JB2 828 aa10.39□□□□□ -0.75
VPS4A-203ENST00000564399 SIN3AQ96ST3 1273 aa10.39□□□□□ -0.75
VPS4A-203ENST00000564399 TAF1LQ8IZX4 1826 aa10.39□□□□□ -0.75
VPS4A-203ENST00000564399 MAP3K19Q56UN5 1328 aa10.38□□□□□ -0.75
VPS4A-203ENST00000564399 KIF3CO14782 793 aa10.38□□□□□ -0.75
VPS4A-203ENST00000564399 FBLN1P23142 703 aa10.38□□□□□ -0.75
VPS4A-203ENST00000564399 APLP1P51693 650 aa10.38□□□□□ -0.75
VPS4A-203ENST00000564399 RAPGEF4Q8WZA2 1011 aa10.38□□□□□ -0.75
VPS4A-203ENST00000564399 AK7Q96M32 723 aa10.38□□□□□ -0.75
VPS4A-203ENST00000564399 A0A1W2PP64 1363 aa10.38□□□□□ -0.75
VPS4A-203ENST00000564399 MEGF6O75095 1541 aa10.38□□□□□ -0.75
VPS4A-203ENST00000564399 PHF14O94880 888 aa10.37□□□□□ -0.75
VPS4A-203ENST00000564399 MPRIPQ6WCQ1 1025 aa10.37□□□□□ -0.75
VPS4A-203ENST00000564399 USHBP1Q8N6Y0 703 aa10.37□□□□□ -0.75
VPS4A-203ENST00000564399 CARD11Q9BXL7 1154 aa10.37□□□□□ -0.75
VPS4A-203ENST00000564399 PALLDQ8WX93 1383 aa10.37□□□□□ -0.75
VPS4A-203ENST00000564399 TATP17735 454 aaPredicted RBP10.36□□□□□ -0.75
VPS4A-203ENST00000564399 NBPF6Q5VWK0 638 aa10.36□□□□□ -0.75
VPS4A-203ENST00000564399 NBPF4Q96M43 638 aa10.36□□□□□ -0.75
VPS4A-203ENST00000564399 CGNL1Q0VF96 1302 aa10.35□□□□□ -0.75
VPS4A-203ENST00000564399 SMIM5Q71RC9 77 aa10.35□□□□□ -0.75
VPS4A-203ENST00000564399 SMARCC1Q92922 1105 aaPredicted RBP10.35□□□□□ -0.75
VPS4A-203ENST00000564399 PCDH11XQ9BZA7 1347 aa10.34□□□□□ -0.75
VPS4A-203ENST00000564399 PCDH11YQ9BZA8 1340 aa10.34□□□□□ -0.75
VPS4A-203ENST00000564399 UBR3Q6ZT12 1888 aa10.34□□□□□ -0.75
VPS4A-203ENST00000564399 C4BP0C0L5 1744 aa10.34□□□□□ -0.75
VPS4A-203ENST00000564399 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.34□□□□□ -0.75
VPS4A-203ENST00000564399 TOMM70O94826 608 aa10.34□□□□□ -0.75
VPS4A-203ENST00000564399 RRS1Q15050 365 aaKnown RBP10.34□□□□□ -0.75
VPS4A-203ENST00000564399 ITGB4P16144 1822 aa10.34□□□□□ -0.75
VPS4A-203ENST00000564399 SMG6Q86US8 1419 aaKnown RBP10.33□□□□□ -0.76
VPS4A-203ENST00000564399 NSD3Q9BZ95 1437 aa10.33□□□□□ -0.76
VPS4A-203ENST00000564399 AMIGO3Q86WK7 504 aa10.33□□□□□ -0.76
VPS4A-203ENST00000564399 RTL1A6NKG5 1358 aa10.32□□□□□ -0.76
VPS4A-203ENST00000564399 SSFA2P28290 1259 aa10.32□□□□□ -0.76
VPS4A-203ENST00000564399 DNAJC5GQ8N7S2 189 aa10.32□□□□□ -0.76
VPS4A-203ENST00000564399 PUS7Q96PZ0 661 aaKnown RBP10.32□□□□□ -0.76
VPS4A-203ENST00000564399 BCS1LQ9Y276 419 aa10.32□□□□□ -0.76
VPS4A-203ENST00000564399 TOGARAM1Q9Y4F4 1720 aa10.31□□□□□ -0.76
VPS4A-203ENST00000564399 CYP27B1O15528 508 aa10.31□□□□□ -0.76
VPS4A-203ENST00000564399 CAPN15O75808 1086 aa10.31□□□□□ -0.76
VPS4A-203ENST00000564399 ARHGAP27Q6ZUM4 889 aa10.31□□□□□ -0.76
VPS4A-203ENST00000564399 C16orf71Q8IYS4 520 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-203ENST00000564399 NMRK2Q9NPI5 230 aa10.31□□□□□ -0.76
VPS4A-203ENST00000564399 N4BP2Q86UW6 1770 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-203ENST00000564399 LOC102724428A0A0B4J2F2 783 aa10.3□□□□□ -0.76
VPS4A-203ENST00000564399 GNPATO15228 680 aa10.3□□□□□ -0.76
VPS4A-203ENST00000564399 MMP10P09238 476 aa10.3□□□□□ -0.76
VPS4A-203ENST00000564399 SIK1P57059 783 aa10.3□□□□□ -0.76
VPS4A-203ENST00000564399 PIGBQ92521 554 aa10.3□□□□□ -0.76
VPS4A-203ENST00000564399 GGNBP2Q9H3C7 697 aa10.3□□□□□ -0.76
VPS4A-203ENST00000564399 A0A0G2JLW4 131 aa10.29□□□□□ -0.76
VPS4A-203ENST00000564399 HSP90AB2PQ58FF8 381 aa10.29□□□□□ -0.76
VPS4A-203ENST00000564399 COL13A1Q5TAT6 717 aaPredicted RBP10.29□□□□□ -0.76
VPS4A-203ENST00000564399 LINC00116Q8NCU8 138 aa10.29□□□□□ -0.76
VPS4A-203ENST00000564399 WDR90Q96KV7 1748 aa10.29□□□□□ -0.76
VPS4A-203ENST00000564399 CICQ96RK0 1608 aaPredicted RBP10.29□□□□□ -0.76
VPS4A-203ENST00000564399 FCHSD2O94868 740 aa10.28□□□□□ -0.76
VPS4A-203ENST00000564399 ATP6V1AP38606 617 aa10.28□□□□□ -0.76
VPS4A-203ENST00000564399 TGFB2P61812 414 aa10.28□□□□□ -0.76
VPS4A-203ENST00000564399 HTRA3P83110 453 aa10.28□□□□□ -0.76
VPS4A-203ENST00000564399 RBM46Q8TBY0 533 aaKnown RBP10.28□□□□□ -0.76
VPS4A-203ENST00000564399 INSRP06213 1382 aa10.27□□□□□ -0.76
VPS4A-203ENST00000564399 FYB1O15117 783 aa10.27□□□□□ -0.77
VPS4A-203ENST00000564399 KLRG1Q96E93 195 aa10.27□□□□□ -0.77
VPS4A-203ENST00000564399 TMOD3Q9NYL9 352 aa10.27□□□□□ -0.77
VPS4A-203ENST00000564399 SPG7Q9UQ90 795 aa10.27□□□□□ -0.77
VPS4A-203ENST00000564399 MAP2P11137 1827 aaKnown RBP10.27□□□□□ -0.77
VPS4A-203ENST00000564399 KIF13BQ9NQT8 1826 aa10.27□□□□□ -0.77
VPS4A-203ENST00000564399 PXDNLA1KZ92 1463 aa10.27□□□□□ -0.77
VPS4A-203ENST00000564399 FLT4P35916 1363 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms