RNA–Protein interactions for RNA: ENST00000564260.1

RNF40-206, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-206ENST00000564260 ZCRB1Q8TBF4 217 aaKnown RBP22.4■■□□□ 1.18
RNF40-206ENST00000564260 EP400Q96L91 3159 aa22.39■■□□□ 1.18
RNF40-206ENST00000564260 RGPD2P0DJD1 1756 aa22.38■■□□□ 1.17
RNF40-206ENST00000564260 PCDH11XQ9BZA7 1347 aa22.38■■□□□ 1.17
RNF40-206ENST00000564260 PCDH11YQ9BZA8 1340 aa22.38■■□□□ 1.17
RNF40-206ENST00000564260 AMOTQ4VCS5 1084 aa22.38■■□□□ 1.17
RNF40-206ENST00000564260 USHBP1Q8N6Y0 703 aa22.38■■□□□ 1.17
RNF40-206ENST00000564260 SPG7Q9UQ90 795 aa22.38■■□□□ 1.17
RNF40-206ENST00000564260 MARCH10Q8NA82 808 aaPredicted RBP22.36■■□□□ 1.17
RNF40-206ENST00000564260 SULT6B1Q6IMI4 303 aa22.35■■□□□ 1.17
RNF40-206ENST00000564260 UPF1Q92900 1129 aaKnown RBP eCLIP22.35■■□□□ 1.17
RNF40-206ENST00000564260 PKD1L3Q7Z443 1732 aa22.34■■□□□ 1.17
RNF40-206ENST00000564260 ANP32CO43423 234 aa22.34■■□□□ 1.17
RNF40-206ENST00000564260 PLEKHO1Q53GL0 409 aaPredicted RBP22.33■■□□□ 1.17
RNF40-206ENST00000564260 SF3B2Q13435 895 aaKnown RBP22.31■■□□□ 1.16
RNF40-206ENST00000564260 PNNQ9H307 717 aaKnown RBP22.31■■□□□ 1.16
RNF40-206ENST00000564260 U2SURPO15042 1029 aaKnown RBP22.3■■□□□ 1.16
RNF40-206ENST00000564260 FCHSD2O94868 740 aa22.3■■□□□ 1.16
RNF40-206ENST00000564260 HSP90AB1P08238 724 aaKnown RBP22.3■■□□□ 1.16
RNF40-206ENST00000564260 NKX1-1Q15270 411 aaPredicted RBP22.3■■□□□ 1.16
RNF40-206ENST00000564260 AEBP1Q8IUX7 1158 aa22.29■■□□□ 1.16
RNF40-206ENST00000564260 IFNL2Q8IZJ0 200 aa22.29■■□□□ 1.16
RNF40-206ENST00000564260 DDX54Q8TDD1 881 aaKnown RBP22.29■■□□□ 1.16
RNF40-206ENST00000564260 BCL11BQ9C0K0 894 aaPredicted RBP22.28■■□□□ 1.16
RNF40-206ENST00000564260 SHANK3Q9BYB0 1731 aa22.28■■□□□ 1.16
RNF40-206ENST00000564260 CYP27B1O15528 508 aa22.26■■□□□ 1.15
RNF40-206ENST00000564260 U2AF1L5P0DN76 240 aaPredicted RBP22.26■■□□□ 1.15
RNF40-206ENST00000564260 U2AF1Q01081 240 aaKnown RBP eCLIP22.26■■□□□ 1.15
RNF40-206ENST00000564260 HMOX1P09601 288 aa22.25■■□□□ 1.15
RNF40-206ENST00000564260 PHKG2P15735 406 aa22.25■■□□□ 1.15
RNF40-206ENST00000564260 FAM182BQ5T319 152 aa22.25■■□□□ 1.15
RNF40-206ENST00000564260 RSPH6AQ9H0K4 717 aa22.25■■□□□ 1.15
RNF40-206ENST00000564260 BAG6P46379 1132 aa22.24■■□□□ 1.15
RNF40-206ENST00000564260 NEFMP07197 916 aa22.23■■□□□ 1.15
RNF40-206ENST00000564260 C1orf141Q5JVX7 400 aa22.23■■□□□ 1.15
RNF40-206ENST00000564260 GAS2L2Q8NHY3 880 aa22.23■■□□□ 1.15
RNF40-206ENST00000564260 NHSQ6T4R5 1651 aa22.23■■□□□ 1.15
RNF40-206ENST00000564260 TRIM37O94972 964 aa22.22■■□□□ 1.15
RNF40-206ENST00000564260 AKAP4Q5JQC9 854 aa22.22■■□□□ 1.15
RNF40-206ENST00000564260 ZNF530Q6P9A1 599 aaPredicted RBP22.22■■□□□ 1.15
RNF40-206ENST00000564260 DCAF5Q96JK2 942 aa22.22■■□□□ 1.15
RNF40-206ENST00000564260 PLSCR1O15162 318 aa22.21■■□□□ 1.15
RNF40-206ENST00000564260 TNS1Q9HBL0 1735 aaKnown RBP22.2■■□□□ 1.14
RNF40-206ENST00000564260 HMGB2P26583 209 aaKnown RBP22.2■■□□□ 1.14
RNF40-206ENST00000564260 SBF2Q86WG5 1849 aa22.2■■□□□ 1.14
RNF40-206ENST00000564260 ERVV-2B6SEH9 535 aa22.19■■□□□ 1.14
RNF40-206ENST00000564260 PRKAR2BP31323 418 aa22.19■■□□□ 1.14
RNF40-206ENST00000564260 WDR43Q15061 677 aaKnown RBP eCLIP22.19■■□□□ 1.14
RNF40-206ENST00000564260 RGPD3A6NKT7 1758 aaPredicted RBP22.19■■□□□ 1.14
RNF40-206ENST00000564260 RGPD4Q7Z3J3 1758 aa22.19■■□□□ 1.14
RNF40-206ENST00000564260 APBA3O96018 575 aa22.17■■□□□ 1.14
RNF40-206ENST00000564260 MTHFSDQ2M296 383 aaKnown RBP22.16■■□□□ 1.14
RNF40-206ENST00000564260 HTATSF1O43719 755 aaKnown RBP22.14■■□□□ 1.13
RNF40-206ENST00000564260 PRIM1P49642 420 aaKnown RBP22.14■■□□□ 1.13
RNF40-206ENST00000564260 PLEKHF1Q96S99 279 aa22.14■■□□□ 1.13
RNF40-206ENST00000564260 DOT1LQ8TEK3 1739 aa22.14■■□□□ 1.13
RNF40-206ENST00000564260 MAP3K5Q99683 1374 aa22.13■■□□□ 1.13
RNF40-206ENST00000564260 MAPK8IP3Q9UPT6 1336 aa22.13■■□□□ 1.13
RNF40-206ENST00000564260 KCNQ2O43526 872 aa22.13■■□□□ 1.13
RNF40-206ENST00000564260 ACSBG1Q96GR2 724 aa22.13■■□□□ 1.13
RNF40-206ENST00000564260 GNAT3A8MTJ3 354 aa22.12■■□□□ 1.13
RNF40-206ENST00000564260 CAMKK2Q96RR4 588 aa22.12■■□□□ 1.13
RNF40-206ENST00000564260 KDM6AO15550 1401 aaPredicted RBP22.12■■□□□ 1.13
RNF40-206ENST00000564260 ADAMTS7Q9UKP4 1686 aa22.11■■□□□ 1.13
RNF40-206ENST00000564260 SMARCC1Q92922 1105 aaPredicted RBP22.11■■□□□ 1.13
RNF40-206ENST00000564260 SYTL4Q96C24 671 aaPredicted RBP22.11■■□□□ 1.13
RNF40-206ENST00000564260 PHACTR3Q96KR7 559 aa22.11■■□□□ 1.13
RNF40-206ENST00000564260 TMOD3Q9NYL9 352 aa22.11■■□□□ 1.13
RNF40-206ENST00000564260 MRC1P22897 1456 aa22.09■■□□□ 1.13
RNF40-206ENST00000564260 MRS2Q9HD23 443 aa22.09■■□□□ 1.13
RNF40-206ENST00000564260 TOGARAM1Q9Y4F4 1720 aa22.09■■□□□ 1.13
RNF40-206ENST00000564260 SLC27A3Q5K4L6 730 aa22.08■■□□□ 1.13
RNF40-206ENST00000564260 DEFB132Q7Z7B7 95 aa22.08■■□□□ 1.13
RNF40-206ENST00000564260 RUNDC1Q96C34 613 aa22.08■■□□□ 1.13
RNF40-206ENST00000564260 ADAMTS8Q9UP79 889 aa22.08■■□□□ 1.13
RNF40-206ENST00000564260 CEMIPQ8WUJ3 1361 aa22.08■■□□□ 1.12
RNF40-206ENST00000564260 RNMTO43148 476 aaKnown RBP22.07■■□□□ 1.12
RNF40-206ENST00000564260 CABP4P57796 275 aa22.07■■□□□ 1.12
RNF40-206ENST00000564260 EN1Q05925 392 aaPredicted RBP22.07■■□□□ 1.12
RNF40-206ENST00000564260 NFE2L2Q16236 605 aa22.07■■□□□ 1.12
RNF40-206ENST00000564260 DIEXFQ68CQ4 756 aaKnown RBP22.07■■□□□ 1.12
RNF40-206ENST00000564260 MPRIPQ6WCQ1 1025 aa22.07■■□□□ 1.12
RNF40-206ENST00000564260 PNISRQ8TF01 805 aaKnown RBP22.07■■□□□ 1.12
RNF40-206ENST00000564260 RTF1Q92541 710 aaKnown RBP22.07■■□□□ 1.12
RNF40-206ENST00000564260 BTAF1O14981 1849 aa22.07■■□□□ 1.12
RNF40-206ENST00000564260 CCER2I3L3R5 266 aa22.06■■□□□ 1.12
RNF40-206ENST00000564260 LMOD3Q0VAK6 560 aa22.06■■□□□ 1.12
RNF40-206ENST00000564260 PTF1AQ7RTS3 328 aa22.06■■□□□ 1.12
RNF40-206ENST00000564260 PIGBQ92521 554 aa22.06■■□□□ 1.12
RNF40-206ENST00000564260 SLC52A2Q9HAB3 445 aa22.06■■□□□ 1.12
RNF40-206ENST00000564260 SCN11AQ9UI33 1791 aa22.04■■□□□ 1.12
RNF40-206ENST00000564260 EZH2Q15910 746 aaKnown RBP22.04■■□□□ 1.12
RNF40-206ENST00000564260 NCBP3Q53F19 620 aaKnown RBP22.04■■□□□ 1.12
RNF40-206ENST00000564260 RREB1Q92766 1687 aa22.04■■□□□ 1.12
RNF40-206ENST00000564260 TXNRD1Q16881 649 aa22.03■■□□□ 1.12
RNF40-206ENST00000564260 PALLDQ8WX93 1383 aa22.02■■□□□ 1.12
RNF40-206ENST00000564260 ITGB4P16144 1822 aa22.02■■□□□ 1.12
RNF40-206ENST00000564260 TEFQ10587 303 aa22.01■■□□□ 1.11
RNF40-206ENST00000564260 NFATC2IPQ8NCF5 419 aa22.01■■□□□ 1.11
RNF40-206ENST00000564260 LGR6Q9HBX8 967 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms