RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 TOM1L2Q6ZVM7 507 aa13.32□□□□□ -0.28
SMG1-208ENST00000563448 GAS2L2Q8NHY3 880 aa13.32□□□□□ -0.28
SMG1-208ENST00000563448 SPATA31A6Q5VVP1 1343 aa13.31□□□□□ -0.28
SMG1-208ENST00000563448 DUSP27Q5VZP5 1158 aa13.31□□□□□ -0.28
SMG1-208ENST00000563448 PELP1Q8IZL8 1130 aaKnown RBP13.31□□□□□ -0.28
SMG1-208ENST00000563448 SCN11AQ9UI33 1791 aa13.31□□□□□ -0.28
SMG1-208ENST00000563448 SLIT2O94813 1529 aa13.31□□□□□ -0.28
SMG1-208ENST00000563448 CRB1P82279 1406 aa13.31□□□□□ -0.28
SMG1-208ENST00000563448 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.31□□□□□ -0.28
SMG1-208ENST00000563448 E9PSI1 815 aa13.3□□□□□ -0.28
SMG1-208ENST00000563448 LMOD3Q0VAK6 560 aa13.3□□□□□ -0.28
SMG1-208ENST00000563448 CARD10Q9BWT7 1032 aa13.3□□□□□ -0.28
SMG1-208ENST00000563448 ADAMTS7Q9UKP4 1686 aa13.3□□□□□ -0.28
SMG1-208ENST00000563448 SIPA1L3O60292 1781 aaPredicted RBP13.29□□□□□ -0.28
SMG1-208ENST00000563448 DCTN1Q14203 1278 aa13.29□□□□□ -0.28
SMG1-208ENST00000563448 PLEKHO1Q53GL0 409 aaPredicted RBP13.29□□□□□ -0.28
SMG1-208ENST00000563448 THUMPD2Q9BTF0 503 aaKnown RBP13.29□□□□□ -0.28
SMG1-208ENST00000563448 IL16Q14005 1332 aa13.29□□□□□ -0.28
SMG1-208ENST00000563448 TATP17735 454 aaPredicted RBP13.29□□□□□ -0.28
SMG1-208ENST00000563448 RAPGEF4Q8WZA2 1011 aa13.29□□□□□ -0.28
SMG1-208ENST00000563448 PLEKHG2Q9H7P9 1386 aa13.28□□□□□ -0.28
SMG1-208ENST00000563448 AMOTQ4VCS5 1084 aa13.28□□□□□ -0.28
SMG1-208ENST00000563448 MAP3K5Q99683 1374 aa13.28□□□□□ -0.28
SMG1-208ENST00000563448 GNAT3A8MTJ3 354 aa13.27□□□□□ -0.28
SMG1-208ENST00000563448 MCM10Q7L590 875 aa13.27□□□□□ -0.28
SMG1-208ENST00000563448 OVOS2A0A0G2JMS6 1433 aa13.27□□□□□ -0.29
SMG1-208ENST00000563448 HTATSF1O43719 755 aaKnown RBP13.27□□□□□ -0.29
SMG1-208ENST00000563448 ZNF530Q6P9A1 599 aaPredicted RBP13.26□□□□□ -0.29
SMG1-208ENST00000563448 AKAP4Q5JQC9 854 aa13.25□□□□□ -0.29
SMG1-208ENST00000563448 RTF1Q92541 710 aaKnown RBP13.25□□□□□ -0.29
SMG1-208ENST00000563448 C8orf37Q96NL8 207 aa13.25□□□□□ -0.29
SMG1-208ENST00000563448 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.25□□□□□ -0.296e-12■■■□□ 15.9
SMG1-208ENST00000563448 KDM3BQ7LBC6 1761 aa13.25□□□□□ -0.29
SMG1-208ENST00000563448 ZNF853P0CG23 659 aa13.25□□□□□ -0.29
SMG1-208ENST00000563448 CALD1Q05682 793 aaKnown RBP13.25□□□□□ -0.29
SMG1-208ENST00000563448 TSR2Q969E8 191 aaKnown RBP13.25□□□□□ -0.29
SMG1-208ENST00000563448 MYH16Q9H6N6 1097 aa13.25□□□□□ -0.29
SMG1-208ENST00000563448 USP35Q9P2H5 1018 aa13.25□□□□□ -0.29
SMG1-208ENST00000563448 BCL9LQ86UU0 1499 aa13.25□□□□□ -0.29
SMG1-208ENST00000563448 DISP2A7MBM2 1401 aa13.24□□□□□ -0.29
SMG1-208ENST00000563448 FANCIQ9NVI1 1328 aa13.24□□□□□ -0.29
SMG1-208ENST00000563448 IL2RBP14784 551 aa13.24□□□□□ -0.29
SMG1-208ENST00000563448 IL17REQ8NFR9 667 aa13.24□□□□□ -0.29
SMG1-208ENST00000563448 NGLY1Q96IV0 654 aa13.24□□□□□ -0.29
SMG1-208ENST00000563448 SPG7Q9UQ90 795 aa13.24□□□□□ -0.29
SMG1-208ENST00000563448 IFT57Q9NWB7 429 aa13.23□□□□□ -0.29
SMG1-208ENST00000563448 LAS1LQ9Y4W2 734 aaKnown RBP13.23□□□□□ -0.29
SMG1-208ENST00000563448 CEMIPQ8WUJ3 1361 aa13.23□□□□□ -0.29
SMG1-208ENST00000563448 GNAI1P63096 354 aa13.23□□□□□ -0.29
SMG1-208ENST00000563448 C1orf141Q5JVX7 400 aa13.23□□□□□ -0.29
SMG1-208ENST00000563448 UNC5CLQ8IV45 518 aa13.23□□□□□ -0.29
SMG1-208ENST00000563448 FNBP4Q8N3X1 1017 aaPredicted RBP13.23□□□□□ -0.29
SMG1-208ENST00000563448 CFAP44Q96MT7 982 aa13.23□□□□□ -0.29
SMG1-208ENST00000563448 LGR6Q9HBX8 967 aa13.23□□□□□ -0.29
SMG1-208ENST00000563448 SUPT16HQ9Y5B9 1047 aaKnown RBP13.23□□□□□ -0.29
SMG1-208ENST00000563448 SPATA31A1Q5TZJ5 1347 aa13.23□□□□□ -0.29
SMG1-208ENST00000563448 ITGB4P16144 1822 aa13.22□□□□□ -0.29
SMG1-208ENST00000563448 PHKG2P15735 406 aa13.22□□□□□ -0.29
SMG1-208ENST00000563448 MPRIPQ6WCQ1 1025 aa13.22□□□□□ -0.29
SMG1-208ENST00000563448 MBIPQ9NS73 344 aa13.22□□□□□ -0.29
SMG1-208ENST00000563448 SPATA31A5Q5VU36 1347 aa13.21□□□□□ -0.29
SMG1-208ENST00000563448 SPATA31A7Q8IWB4 1347 aa13.21□□□□□ -0.29
SMG1-208ENST00000563448 TOGARAM1Q9Y4F4 1720 aa13.21□□□□□ -0.29
SMG1-208ENST00000563448 CYP27B1O15528 508 aa13.21□□□□□ -0.29
SMG1-208ENST00000563448 RNMTO43148 476 aaKnown RBP13.21□□□□□ -0.29
SMG1-208ENST00000563448 MEX3CQ5U5Q3 659 aaKnown RBP13.21□□□□□ -0.29
SMG1-208ENST00000563448 IFNL2Q8IZJ0 200 aa13.21□□□□□ -0.29
SMG1-208ENST00000563448 ZCRB1Q8TBF4 217 aaKnown RBP13.21□□□□□ -0.29
SMG1-208ENST00000563448 RCAN3Q9UKA8 241 aa13.21□□□□□ -0.29
SMG1-208ENST00000563448 KDM6AO15550 1401 aaPredicted RBP13.21□□□□□ -0.3
SMG1-208ENST00000563448 CHL1O00533 1208 aa13.2□□□□□ -0.3
SMG1-208ENST00000563448 EXOSC9Q06265 439 aaKnown RBP13.2□□□□□ -0.3
SMG1-208ENST00000563448 THRAP3Q9Y2W1 955 aaKnown RBP13.2□□□□□ -0.3
SMG1-208ENST00000563448 KAT6BQ8WYB5 2073 aa13.2□□□□□ -0.3
SMG1-208ENST00000563448 VPS72Q15906 364 aa13.19□□□□□ -0.3
SMG1-208ENST00000563448 USP21Q9UK80 565 aa13.19□□□□□ -0.3
SMG1-208ENST00000563448 PCDH11XQ9BZA7 1347 aa13.19□□□□□ -0.3
SMG1-208ENST00000563448 PCDH11YQ9BZA8 1340 aa13.19□□□□□ -0.3
SMG1-208ENST00000563448 MIS18AQ9NYP9 233 aa13.18□□□□□ -0.3
SMG1-208ENST00000563448 GLI3P10071 1580 aa13.18□□□□□ -0.3
SMG1-208ENST00000563448 TAF7Q15545 349 aaPredicted RBP13.18□□□□□ -0.3
SMG1-208ENST00000563448 CCDC9Q9Y3X0 531 aaKnown RBP13.18□□□□□ -0.3
SMG1-208ENST00000563448 RNF123Q5XPI4 1314 aa13.18□□□□□ -0.3
SMG1-208ENST00000563448 MRC1P22897 1456 aa13.18□□□□□ -0.3
SMG1-208ENST00000563448 AFF2P51816 1311 aa13.17□□□□□ -0.3
SMG1-208ENST00000563448 CACNA1FO60840 1977 aa13.17□□□□□ -0.3
SMG1-208ENST00000563448 BARGINQ6ZT62 677 aa13.17□□□□□ -0.3
SMG1-208ENST00000563448 TSPYL4Q9UJ04 414 aa13.17□□□□□ -0.3
SMG1-208ENST00000563448 THSD7AQ9UPZ6 1657 aa13.17□□□□□ -0.3
SMG1-208ENST00000563448 DOT1LQ8TEK3 1739 aa13.16□□□□□ -0.3
SMG1-208ENST00000563448 TNS2Q63HR2 1409 aa13.16□□□□□ -0.3
SMG1-208ENST00000563448 HSP90AB1P08238 724 aaKnown RBP13.16□□□□□ -0.3
SMG1-208ENST00000563448 TEFQ10587 303 aa13.16□□□□□ -0.3
SMG1-208ENST00000563448 DDX54Q8TDD1 881 aaKnown RBP13.16□□□□□ -0.3
SMG1-208ENST00000563448 DCAF5Q96JK2 942 aa13.16□□□□□ -0.3
SMG1-208ENST00000563448 CDCA7Q9BWT1 371 aaPredicted RBP13.16□□□□□ -0.3
SMG1-208ENST00000563448 BABAM1Q9NWV8 329 aa13.16□□□□□ -0.3
SMG1-208ENST00000563448 CT47B1P0C2W7 299 aaPredicted RBP13.15□□□□□ -0.3
SMG1-208ENST00000563448 NKX1-1Q15270 411 aaPredicted RBP13.15□□□□□ -0.3
SMG1-208ENST00000563448 C8orf58Q8NAV2 365 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms