RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 MEGF6O75095 1541 aa21.91■■□□□ 1.1
CLK3-211ENST00000563297 CLSPNQ9HAW4 1339 aa21.91■■□□□ 1.1
CLK3-211ENST00000563297 SLC27A3Q5K4L6 730 aa21.91■■□□□ 1.1
CLK3-211ENST00000563297 SGIP1Q9BQI5 828 aa21.91■■□□□ 1.1
CLK3-211ENST00000563297 INSRP06213 1382 aa21.9■■□□□ 1.1
CLK3-211ENST00000563297 DCAF8L1A6NGE4 600 aa21.9■■□□□ 1.1
CLK3-211ENST00000563297 AKT1S1Q96B36 256 aa21.9■■□□□ 1.1
CLK3-211ENST00000563297 CGNL1Q0VF96 1302 aa21.89■■□□□ 1.1
CLK3-211ENST00000563297 RAPGEF4Q8WZA2 1011 aa21.89■■□□□ 1.09
CLK3-211ENST00000563297 KIF20BQ96Q89 1820 aa21.89■■□□□ 1.09
CLK3-211ENST00000563297 SHANK3Q9BYB0 1731 aa21.89■■□□□ 1.09
CLK3-211ENST00000563297 YY1P25490 414 aa21.88■■□□□ 1.09
CLK3-211ENST00000563297 KCNQ4P56696 695 aa21.88■■□□□ 1.09
CLK3-211ENST00000563297 MYOM1P52179 1685 aa21.88■■□□□ 1.09
CLK3-211ENST00000563297 KIF24Q5T7B8 1368 aa21.87■■□□□ 1.09
CLK3-211ENST00000563297 TATP17735 454 aaPredicted RBP21.87■■□□□ 1.09
CLK3-211ENST00000563297 SYT17Q9BSW7 474 aa21.87■■□□□ 1.09
CLK3-211ENST00000563297 SMG6Q86US8 1419 aaKnown RBP21.87■■□□□ 1.09
CLK3-211ENST00000563297 NSD3Q9BZ95 1437 aa21.87■■□□□ 1.09
CLK3-211ENST00000563297 NSD2O96028 1365 aa21.87■■□□□ 1.09
CLK3-211ENST00000563297 FLT4P35916 1363 aa21.87■■□□□ 1.09
CLK3-211ENST00000563297 FHDC1Q9C0D6 1143 aaPredicted RBP21.86■■□□□ 1.09
CLK3-211ENST00000563297 EMILIN1Q9Y6C2 1016 aa21.86■■□□□ 1.09
CLK3-211ENST00000563297 DOT1LQ8TEK3 1739 aa21.85■■□□□ 1.09
CLK3-211ENST00000563297 ARXQ96QS3 562 aa21.84■■□□□ 1.09
CLK3-211ENST00000563297 SLC16A10Q8TF71 515 aa21.83■■□□□ 1.09
CLK3-211ENST00000563297 LY75O60449 1722 aa21.82■■□□□ 1.08
CLK3-211ENST00000563297 PNPLA7Q6ZV29 1317 aa21.81■■□□□ 1.08
CLK3-211ENST00000563297 PPM1GO15355 546 aaPredicted RBP21.81■■□□□ 1.08
CLK3-211ENST00000563297 TFCP2L1Q9NZI6 479 aa21.81■■□□□ 1.08
CLK3-211ENST00000563297 CYP27B1O15528 508 aa21.8■■□□□ 1.08
CLK3-211ENST00000563297 CCNL1Q9UK58 526 aaPredicted RBP21.8■■□□□ 1.08
CLK3-211ENST00000563297 MAP2P11137 1827 aaKnown RBP21.8■■□□□ 1.08
CLK3-211ENST00000563297 PCDH11XQ9BZA7 1347 aa21.8■■□□□ 1.08
CLK3-211ENST00000563297 PCDH11YQ9BZA8 1340 aa21.8■■□□□ 1.08
CLK3-211ENST00000563297 POLR3GLQ9BT43 218 aa21.79■■□□□ 1.08
CLK3-211ENST00000563297 QSER1Q2KHR3 1735 aa21.79■■□□□ 1.08
CLK3-211ENST00000563297 WASHC2AQ641Q2 1341 aa21.79■■□□□ 1.08
CLK3-211ENST00000563297 POLKQ9UBT6 870 aa21.77■■□□□ 1.08
CLK3-211ENST00000563297 TUBGCP6Q96RT7 1819 aa21.76■■□□□ 1.07
CLK3-211ENST00000563297 HSPA5P11021 654 aaKnown RBP21.75■■□□□ 1.07
CLK3-211ENST00000563297 EIF4G2P78344 907 aaKnown RBP eCLIP21.75■■□□□ 1.07
CLK3-211ENST00000563297 MPRIPQ6WCQ1 1025 aa21.75■■□□□ 1.07
CLK3-211ENST00000563297 EYA1Q99502 592 aa21.75■■□□□ 1.07
CLK3-211ENST00000563297 MAP3K5Q99683 1374 aa21.74■■□□□ 1.07
CLK3-211ENST00000563297 NCAPD2Q15021 1401 aa21.74■■□□□ 1.07
CLK3-211ENST00000563297 POLD1P28340 1107 aa21.73■■□□□ 1.07
CLK3-211ENST00000563297 COL24A1Q17RW2 1714 aa21.72■■□□□ 1.07
CLK3-211ENST00000563297 ANKRD26Q9UPS8 1709 aa21.72■■□□□ 1.07
CLK3-211ENST00000563297 NKX1-1Q15270 411 aaPredicted RBP21.72■■□□□ 1.07
CLK3-211ENST00000563297 COL23A1Q86Y22 540 aaPredicted RBP21.72■■□□□ 1.07
CLK3-211ENST00000563297 SPG7Q9UQ90 795 aa21.72■■□□□ 1.07
CLK3-211ENST00000563297 UTRNP46939 3433 aa21.72■■□□□ 1.07
CLK3-211ENST00000563297 TNNT2P45379 298 aaPredicted RBP21.71■■□□□ 1.07
CLK3-211ENST00000563297 PANK3Q9H999 370 aa21.71■■□□□ 1.07
CLK3-211ENST00000563297 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.71■■□□□ 1.07
CLK3-211ENST00000563297 ITGB4P16144 1822 aa21.71■■□□□ 1.07
CLK3-211ENST00000563297 PKD1L3Q7Z443 1732 aa21.7■■□□□ 1.06
CLK3-211ENST00000563297 CCER1Q8TC90 406 aaPredicted RBP21.7■■□□□ 1.06
CLK3-211ENST00000563297 PIGBQ92521 554 aa21.7■■□□□ 1.06
CLK3-211ENST00000563297 PALLDQ8WX93 1383 aa21.7■■□□□ 1.06
CLK3-211ENST00000563297 MSH5O43196 834 aa21.69■■□□□ 1.06
CLK3-211ENST00000563297 EIF4A2Q14240 407 aaKnown RBP21.69■■□□□ 1.06
CLK3-211ENST00000563297 SMARCC1Q92922 1105 aaPredicted RBP21.69■■□□□ 1.06
CLK3-211ENST00000563297 HMGB2P26583 209 aaKnown RBP21.68■■□□□ 1.06
CLK3-211ENST00000563297 KLHL34Q8N239 644 aa21.68■■□□□ 1.06
CLK3-211ENST00000563297 TOGARAM1Q9Y4F4 1720 aa21.68■■□□□ 1.06
CLK3-211ENST00000563297 TAF1LQ8IZX4 1826 aa21.66■■□□□ 1.06
CLK3-211ENST00000563297 CHD4Q14839 1912 aa21.66■■□□□ 1.06
CLK3-211ENST00000563297 GPR162Q16538 588 aa21.65■■□□□ 1.06
CLK3-211ENST00000563297 IFNL2Q8IZJ0 200 aa21.65■■□□□ 1.06
CLK3-211ENST00000563297 C5P01031 1676 aa21.65■■□□□ 1.06
CLK3-211ENST00000563297 PHKG2P15735 406 aa21.64■■□□□ 1.05
CLK3-211ENST00000563297 FLAD1Q8NFF5 587 aa21.64■■□□□ 1.05
CLK3-211ENST00000563297 MSL1Q68DK7 614 aa21.63■■□□□ 1.05
CLK3-211ENST00000563297 ZNF784Q8NCA9 323 aaPredicted RBP21.63■■□□□ 1.05
CLK3-211ENST00000563297 NLGN2Q8NFZ4 835 aa21.63■■□□□ 1.05
CLK3-211ENST00000563297 TMOD3Q9NYL9 352 aa21.62■■□□□ 1.05
CLK3-211ENST00000563297 IGSF1Q8N6C5 1336 aa21.61■■□□□ 1.05
CLK3-211ENST00000563297 AMIGO3Q86WK7 504 aa21.61■■□□□ 1.05
CLK3-211ENST00000563297 ASAP1Q9ULH1 1129 aa21.61■■□□□ 1.05
CLK3-211ENST00000563297 LOC102724428A0A0B4J2F2 783 aa21.6■■□□□ 1.05
CLK3-211ENST00000563297 SIK1P57059 783 aa21.6■■□□□ 1.05
CLK3-211ENST00000563297 AK7Q96M32 723 aa21.6■■□□□ 1.05
CLK3-211ENST00000563297 C4BP0C0L5 1744 aa21.59■■□□□ 1.05
CLK3-211ENST00000563297 SMIM5Q71RC9 77 aa21.59■■□□□ 1.05
CLK3-211ENST00000563297 MORC1Q86VD1 984 aa21.59■■□□□ 1.05
CLK3-211ENST00000563297 PELP1Q8IZL8 1130 aaKnown RBP21.58■■□□□ 1.05
CLK3-211ENST00000563297 LINC00116Q8NCU8 138 aa21.57■■□□□ 1.04
CLK3-211ENST00000563297 ATG3Q9NT62 314 aa21.57■■□□□ 1.04
CLK3-211ENST00000563297 PLEKHG2Q9H7P9 1386 aa21.57■■□□□ 1.04
CLK3-211ENST00000563297 ITPK1Q13572 414 aa21.56■■□□□ 1.04
CLK3-211ENST00000563297 KNSTRNQ9Y448 316 aa21.56■■□□□ 1.04
CLK3-211ENST00000563297 GOLGB1Q14789 3259 aaKnown RBP21.56■■□□□ 1.04
CLK3-211ENST00000563297 UBR3Q6ZT12 1888 aa21.56■■□□□ 1.04
CLK3-211ENST00000563297 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.55■■□□□ 1.04
CLK3-211ENST00000563297 ERVV-2B6SEH9 535 aa21.55■■□□□ 1.04
CLK3-211ENST00000563297 PHF14O94880 888 aa21.55■■□□□ 1.04
CLK3-211ENST00000563297 ATP6V1AP38606 617 aa21.55■■□□□ 1.04
CLK3-211ENST00000563297 PLEKHO1Q53GL0 409 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms