RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 HAP1P54257 671 aaPredicted RBP23.29■■□□□ 1.32
COMMD4-208ENST00000563220 TSPYL6Q8N831 410 aa23.29■■□□□ 1.32
COMMD4-208ENST00000563220 PRDM11Q9NQV5 511 aa23.29■■□□□ 1.32
COMMD4-208ENST00000563220 NLRP2Q9NX02 1062 aa23.29■■□□□ 1.32
COMMD4-208ENST00000563220 ROBO1Q9Y6N7 1651 aa23.29■■□□□ 1.32
COMMD4-208ENST00000563220 IL17REQ8NFR9 667 aa23.28■■□□□ 1.32
COMMD4-208ENST00000563220 SSH1Q8WYL5 1049 aa23.28■■□□□ 1.32
COMMD4-208ENST00000563220 MAP3K5Q99683 1374 aa23.28■■□□□ 1.32
COMMD4-208ENST00000563220 VAMP4O75379 141 aa23.28■■□□□ 1.32
COMMD4-208ENST00000563220 FRAT1Q92837 279 aaPredicted RBP23.28■■□□□ 1.32
COMMD4-208ENST00000563220 ABCC6O95255 1503 aa23.28■■□□□ 1.32
COMMD4-208ENST00000563220 CSB-PGBD3P0DP91 1061 aa23.27■■□□□ 1.32
COMMD4-208ENST00000563220 PLEKHO1Q53GL0 409 aaPredicted RBP23.27■■□□□ 1.32
COMMD4-208ENST00000563220 CAMTA1Q9Y6Y1 1673 aa23.27■■□□□ 1.32
COMMD4-208ENST00000563220 C8orf58Q8NAV2 365 aa23.26■■□□□ 1.31
COMMD4-208ENST00000563220 ELL2O00472 640 aaPredicted RBP23.25■■□□□ 1.31
COMMD4-208ENST00000563220 AMOTQ4VCS5 1084 aa23.25■■□□□ 1.31
COMMD4-208ENST00000563220 SMC4Q9NTJ3 1288 aa23.25■■□□□ 1.31
COMMD4-208ENST00000563220 MIS18AQ9NYP9 233 aa23.25■■□□□ 1.31
COMMD4-208ENST00000563220 LMO7Q8WWI1 1683 aa23.25■■□□□ 1.31
COMMD4-208ENST00000563220 CANXP27824 592 aaKnown RBP23.24■■□□□ 1.31
COMMD4-208ENST00000563220 AHDC1Q5TGY3 1603 aaPredicted RBP23.24■■□□□ 1.31
COMMD4-208ENST00000563220 PDE3AQ14432 1141 aa23.24■■□□□ 1.31
COMMD4-208ENST00000563220 ZNF530Q6P9A1 599 aaPredicted RBP23.24■■□□□ 1.31
COMMD4-208ENST00000563220 TWISTNBQ3B726 338 aaPredicted RBP23.23■■□□□ 1.31
COMMD4-208ENST00000563220 CCDC136Q96JN2 1154 aa23.23■■□□□ 1.31
COMMD4-208ENST00000563220 TNNQ9UQP3 1299 aa23.23■■□□□ 1.31
COMMD4-208ENST00000563220 ALDH1L2Q3SY69 923 aa23.22■■□□□ 1.31
COMMD4-208ENST00000563220 ZNF428Q96B54 188 aa23.22■■□□□ 1.31
COMMD4-208ENST00000563220 TOM1O60784 492 aa23.22■■□□□ 1.31
COMMD4-208ENST00000563220 AKAP4Q5JQC9 854 aa23.22■■□□□ 1.31
COMMD4-208ENST00000563220 KRT24Q2M2I5 525 aa23.21■■□□□ 1.31
COMMD4-208ENST00000563220 PANK1Q8TE04 598 aa23.21■■□□□ 1.31
COMMD4-208ENST00000563220 LGR6Q9HBX8 967 aa23.21■■□□□ 1.31
COMMD4-208ENST00000563220 ABCA3Q99758 1704 aa23.21■■□□□ 1.31
COMMD4-208ENST00000563220 AEBP2Q6ZN18 517 aaPredicted RBP23.2■■□□□ 1.3
COMMD4-208ENST00000563220 RAPGEF4Q8WZA2 1011 aa23.2■■□□□ 1.3
COMMD4-208ENST00000563220 TSPYL4Q9UJ04 414 aa23.2■■□□□ 1.3
COMMD4-208ENST00000563220 PIP4K2BP78356 416 aa23.19■■□□□ 1.3
COMMD4-208ENST00000563220 CEMIPQ8WUJ3 1361 aa23.19■■□□□ 1.3
COMMD4-208ENST00000563220 RLBP1P12271 317 aa23.19■■□□□ 1.3
COMMD4-208ENST00000563220 WDR17Q8IZU2 1322 aa23.18■■□□□ 1.3
COMMD4-208ENST00000563220 TAF7Q15545 349 aaPredicted RBP23.18■■□□□ 1.3
COMMD4-208ENST00000563220 ZKSCAN2Q63HK3 967 aa23.18■■□□□ 1.3
COMMD4-208ENST00000563220 NOB1Q9ULX3 412 aaKnown RBP23.18■■□□□ 1.3
COMMD4-208ENST00000563220 FAM208AQ9UK61 1670 aaKnown RBP23.18■■□□□ 1.3
COMMD4-208ENST00000563220 TATP17735 454 aaPredicted RBP23.17■■□□□ 1.3
COMMD4-208ENST00000563220 BRPF1P55201 1214 aaPredicted RBP23.17■■□□□ 1.3
COMMD4-208ENST00000563220 C1orf141Q5JVX7 400 aa23.17■■□□□ 1.3
COMMD4-208ENST00000563220 MPRIPQ6WCQ1 1025 aa23.17■■□□□ 1.3
COMMD4-208ENST00000563220 LRRC37A3O60309 1634 aa23.17■■□□□ 1.3
COMMD4-208ENST00000563220 COL5A2P05997 1499 aaPredicted RBP23.17■■□□□ 1.3
COMMD4-208ENST00000563220 MEGF6O75095 1541 aa23.16■■□□□ 1.3
COMMD4-208ENST00000563220 MRPL50Q8N5N7 158 aaKnown RBP23.16■■□□□ 1.3
COMMD4-208ENST00000563220 CLUAP1Q96AJ1 413 aa23.16■■□□□ 1.3
COMMD4-208ENST00000563220 COG6Q9Y2V7 657 aa23.16■■□□□ 1.3
COMMD4-208ENST00000563220 TCERG1O14776 1098 aaKnown RBP23.15■■□□□ 1.3
COMMD4-208ENST00000563220 TOM1L2Q6ZVM7 507 aa23.15■■□□□ 1.3
COMMD4-208ENST00000563220 RNMTO43148 476 aaKnown RBP23.14■■□□□ 1.29
COMMD4-208ENST00000563220 TRIM27P14373 513 aa23.14■■□□□ 1.29
COMMD4-208ENST00000563220 BABAM1Q9NWV8 329 aa23.14■■□□□ 1.29
COMMD4-208ENST00000563220 UBAP1LF5GYI3 381 aa23.13■■□□□ 1.29
COMMD4-208ENST00000563220 ATF7IPQ6VMQ6 1270 aa23.13■■□□□ 1.29
COMMD4-208ENST00000563220 STRN4Q9NRL3 753 aa23.13■■□□□ 1.29
COMMD4-208ENST00000563220 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.13■■□□□ 1.29
COMMD4-208ENST00000563220 LARP1Q6PKG0 1096 aaKnown RBP23.13■■□□□ 1.29
COMMD4-208ENST00000563220 KIF16BQ96L93 1317 aa23.12■■□□□ 1.29
COMMD4-208ENST00000563220 EVA1CP58658 441 aa23.12■■□□□ 1.29
COMMD4-208ENST00000563220 DZIP1LQ8IYY4 767 aaKnown RBP23.12■■□□□ 1.29
COMMD4-208ENST00000563220 SPG7Q9UQ90 795 aa23.12■■□□□ 1.29
COMMD4-208ENST00000563220 IPO8O15397 1037 aaKnown RBP23.11■■□□□ 1.29
COMMD4-208ENST00000563220 CARD10Q9BWT7 1032 aa23.11■■□□□ 1.29
COMMD4-208ENST00000563220 TSHZ2Q9NRE2 1034 aa23.1■■□□□ 1.29
COMMD4-208ENST00000563220 BTG4Q9NY30 223 aa23.1■■□□□ 1.29
COMMD4-208ENST00000563220 COL16A1Q07092 1604 aaPredicted RBP23.1■■□□□ 1.29
COMMD4-208ENST00000563220 COL22A1Q8NFW1 1626 aaPredicted RBP23.1■■□□□ 1.29
COMMD4-208ENST00000563220 PHKG2P15735 406 aa23.09■■□□□ 1.29
COMMD4-208ENST00000563220 MS4A1P11836 297 aa23.09■■□□□ 1.29
COMMD4-208ENST00000563220 TEFQ10587 303 aa23.09■■□□□ 1.29
COMMD4-208ENST00000563220 FTSJ3Q8IY81 847 aaKnown RBP23.09■■□□□ 1.29
COMMD4-208ENST00000563220 PHLPP1O60346 1717 aa23.08■■□□□ 1.29
COMMD4-208ENST00000563220 PLEKHG2Q9H7P9 1386 aa23.08■■□□□ 1.29
COMMD4-208ENST00000563220 CYP27B1O15528 508 aa23.07■■□□□ 1.28
COMMD4-208ENST00000563220 MVPQ14764 893 aaKnown RBP23.07■■□□□ 1.28
COMMD4-208ENST00000563220 IFNL2Q8IZJ0 200 aa23.07■■□□□ 1.28
COMMD4-208ENST00000563220 ARHGAP45Q92619 1136 aa23.07■■□□□ 1.28
COMMD4-208ENST00000563220 OVOS2A0A0G2JMS6 1433 aa23.06■■□□□ 1.28
COMMD4-208ENST00000563220 KCNQ3O43525 872 aa23.06■■□□□ 1.28
COMMD4-208ENST00000563220 BTBD11A6QL63 1104 aa23.05■■□□□ 1.28
COMMD4-208ENST00000563220 EIF4A1P60842 406 aaKnown RBP23.04■■□□□ 1.28
COMMD4-208ENST00000563220 TMEM57Q8N5G2 664 aa23.04■■□□□ 1.28
COMMD4-208ENST00000563220 KDM6AO15550 1401 aaPredicted RBP23.03■■□□□ 1.28
COMMD4-208ENST00000563220 IL2RBP14784 551 aa23.03■■□□□ 1.28
COMMD4-208ENST00000563220 ADAMTS2O95450 1211 aa23.02■■□□□ 1.28
COMMD4-208ENST00000563220 ZCRB1Q8TBF4 217 aaKnown RBP23.02■■□□□ 1.28
COMMD4-208ENST00000563220 CERKQ8TCT0 537 aa23.02■■□□□ 1.28
COMMD4-208ENST00000563220 USP35Q9P2H5 1018 aa23.02■■□□□ 1.28
COMMD4-208ENST00000563220 ADAMTS7Q9UKP4 1686 aa23.01■■□□□ 1.27
COMMD4-208ENST00000563220 COL14A1Q05707 1796 aaKnown RBP23.01■■□□□ 1.27
COMMD4-208ENST00000563220 SLC4A2P04920 1241 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms