RNA–Protein interactions for RNA: ENST00000562707.5

CMTM3-205, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 3 BASIC

Gene CMTM3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-205ENST00000562707 GPR162Q16538 588 aa23.21■■□□□ 1.31
CMTM3-205ENST00000562707 KLHL34Q8N239 644 aa23.21■■□□□ 1.31
CMTM3-205ENST00000562707 GGNBP2Q9H3C7 697 aa23.21■■□□□ 1.31
CMTM3-205ENST00000562707 PNPLA7Q6ZV29 1317 aa23.21■■□□□ 1.31
CMTM3-205ENST00000562707 RTL1A6NKG5 1358 aa23.2■■□□□ 1.3
CMTM3-205ENST00000562707 NBPF6Q5VWK0 638 aa23.2■■□□□ 1.3
CMTM3-205ENST00000562707 RAPGEF4Q8WZA2 1011 aa23.2■■□□□ 1.3
CMTM3-205ENST00000562707 NBPF4Q96M43 638 aa23.2■■□□□ 1.3
CMTM3-205ENST00000562707 CGNL1Q0VF96 1302 aa23.19■■□□□ 1.3
CMTM3-205ENST00000562707 CCNL1Q9UK58 526 aaPredicted RBP23.19■■□□□ 1.3
CMTM3-205ENST00000562707 FAM208AQ9UK61 1670 aaKnown RBP23.18■■□□□ 1.3
CMTM3-205ENST00000562707 SMG6Q86US8 1419 aaKnown RBP23.17■■□□□ 1.3
CMTM3-205ENST00000562707 TATP17735 454 aaPredicted RBP23.17■■□□□ 1.3
CMTM3-205ENST00000562707 CDCA8Q53HL2 280 aa23.17■■□□□ 1.3
CMTM3-205ENST00000562707 USHBP1Q8N6Y0 703 aa23.17■■□□□ 1.3
CMTM3-205ENST00000562707 MEGF6O75095 1541 aa23.16■■□□□ 1.3
CMTM3-205ENST00000562707 NSD2O96028 1365 aa23.15■■□□□ 1.3
CMTM3-205ENST00000562707 USP47Q96K76 1375 aa23.15■■□□□ 1.3
CMTM3-205ENST00000562707 MSH5O43196 834 aa23.15■■□□□ 1.3
CMTM3-205ENST00000562707 HMGB2P26583 209 aaKnown RBP23.14■■□□□ 1.29
CMTM3-205ENST00000562707 PELP1Q8IZL8 1130 aaKnown RBP23.14■■□□□ 1.29
CMTM3-205ENST00000562707 KAT6BQ8WYB5 2073 aa23.13■■□□□ 1.29
CMTM3-205ENST00000562707 HSP90AB2PQ58FF8 381 aa23.12■■□□□ 1.29
CMTM3-205ENST00000562707 INSRP06213 1382 aa23.12■■□□□ 1.29
CMTM3-205ENST00000562707 COL23A1Q86Y22 540 aaPredicted RBP23.1■■□□□ 1.29
CMTM3-205ENST00000562707 PCDH11XQ9BZA7 1347 aa23.09■■□□□ 1.29
CMTM3-205ENST00000562707 PCDH11YQ9BZA8 1340 aa23.09■■□□□ 1.29
CMTM3-205ENST00000562707 FLT4P35916 1363 aa23.08■■□□□ 1.29
CMTM3-205ENST00000562707 KIF24Q5T7B8 1368 aa23.08■■□□□ 1.29
CMTM3-205ENST00000562707 MPRIPQ6WCQ1 1025 aa23.07■■□□□ 1.28
CMTM3-205ENST00000562707 NLGN2Q8NFZ4 835 aa23.07■■□□□ 1.28
CMTM3-205ENST00000562707 DOT1LQ8TEK3 1739 aa23.06■■□□□ 1.28
CMTM3-205ENST00000562707 FLAD1Q8NFF5 587 aa23.06■■□□□ 1.28
CMTM3-205ENST00000562707 UTRNP46939 3433 aa23.05■■□□□ 1.28
CMTM3-205ENST00000562707 C1QTNF8P60827 252 aa23.05■■□□□ 1.28
CMTM3-205ENST00000562707 CARD14Q9BXL6 1004 aa23.04■■□□□ 1.28
CMTM3-205ENST00000562707 QSER1Q2KHR3 1735 aa23.04■■□□□ 1.28
CMTM3-205ENST00000562707 PALLDQ8WX93 1383 aa23.03■■□□□ 1.28
CMTM3-205ENST00000562707 PPM1GO15355 546 aaPredicted RBP23.03■■□□□ 1.28
CMTM3-205ENST00000562707 CYP27B1O15528 508 aa23.03■■□□□ 1.28
CMTM3-205ENST00000562707 GRIN3BO60391 1043 aa23.03■■□□□ 1.28
CMTM3-205ENST00000562707 TRIM26Q12899 539 aaPredicted RBP23.03■■□□□ 1.28
CMTM3-205ENST00000562707 MSL1Q68DK7 614 aa23.03■■□□□ 1.28
CMTM3-205ENST00000562707 SMARCC1Q92922 1105 aaPredicted RBP23.03■■□□□ 1.28
CMTM3-205ENST00000562707 EMILIN1Q9Y6C2 1016 aa23.02■■□□□ 1.28
CMTM3-205ENST00000562707 RGPD2P0DJD1 1756 aa23.01■■□□□ 1.27
CMTM3-205ENST00000562707 SENP3-EIF4A1A0A087X0R7 540 aa23.01■■□□□ 1.27
CMTM3-205ENST00000562707 LY75O60449 1722 aa23.01■■□□□ 1.27
CMTM3-205ENST00000562707 SPG7Q9UQ90 795 aa23■■□□□ 1.27
CMTM3-205ENST00000562707 SHANK3Q9BYB0 1731 aa22.99■■□□□ 1.27
CMTM3-205ENST00000562707 AK7Q96M32 723 aa22.99■■□□□ 1.27
CMTM3-205ENST00000562707 NSD3Q9BZ95 1437 aa22.99■■□□□ 1.27
CMTM3-205ENST00000562707 GIGYF1O75420 1035 aaPredicted RBP22.98■■□□□ 1.27
CMTM3-205ENST00000562707 YBX3P16989 372 aaKnown RBP eCLIP22.98■■□□□ 1.271e-6■■□□□ 12.5
CMTM3-205ENST00000562707 CD2APQ9Y5K6 639 aa22.98■■□□□ 1.27
CMTM3-205ENST00000562707 COL24A1Q17RW2 1714 aa22.96■■□□□ 1.27
CMTM3-205ENST00000562707 CHD4Q14839 1912 aa22.96■■□□□ 1.27
CMTM3-205ENST00000562707 NKX1-1Q15270 411 aaPredicted RBP22.96■■□□□ 1.27
CMTM3-205ENST00000562707 PIGBQ92521 554 aa22.96■■□□□ 1.27
CMTM3-205ENST00000562707 WASHC2AQ641Q2 1341 aa22.96■■□□□ 1.27
CMTM3-205ENST00000562707 TIMELESSQ9UNS1 1208 aa22.95■■□□□ 1.26
CMTM3-205ENST00000562707 EYA1Q99502 592 aa22.94■■□□□ 1.26
CMTM3-205ENST00000562707 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.94■■□□□ 1.26
CMTM3-205ENST00000562707 TUBGCP6Q96RT7 1819 aa22.94■■□□□ 1.26
CMTM3-205ENST00000562707 PHF14O94880 888 aa22.92■■□□□ 1.26
CMTM3-205ENST00000562707 TMOD3Q9NYL9 352 aa22.92■■□□□ 1.26
CMTM3-205ENST00000562707 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.91■■□□□ 1.26
CMTM3-205ENST00000562707 LOC102724428A0A0B4J2F2 783 aa22.91■■□□□ 1.26
CMTM3-205ENST00000562707 SIK1P57059 783 aa22.91■■□□□ 1.26
CMTM3-205ENST00000562707 IFNL2Q8IZJ0 200 aa22.9■■□□□ 1.26
CMTM3-205ENST00000562707 POLR3GLQ9BT43 218 aa22.9■■□□□ 1.26
CMTM3-205ENST00000562707 POLKQ9UBT6 870 aa22.9■■□□□ 1.26
CMTM3-205ENST00000562707 NCAPD2Q15021 1401 aa22.9■■□□□ 1.26
CMTM3-205ENST00000562707 KIF20BQ96Q89 1820 aa22.89■■□□□ 1.26
CMTM3-205ENST00000562707 SSFA2P28290 1259 aa22.89■■□□□ 1.25
CMTM3-205ENST00000562707 AMIGO3Q86WK7 504 aa22.88■■□□□ 1.25
CMTM3-205ENST00000562707 C5P01031 1676 aa22.87■■□□□ 1.25
CMTM3-205ENST00000562707 PHKG2P15735 406 aa22.87■■□□□ 1.25
CMTM3-205ENST00000562707 SMIM5Q71RC9 77 aa22.87■■□□□ 1.25
CMTM3-205ENST00000562707 LINC00116Q8NCU8 138 aa22.87■■□□□ 1.25
CMTM3-205ENST00000562707 ASAP1Q9ULH1 1129 aa22.87■■□□□ 1.25
CMTM3-205ENST00000562707 ATP6V1AP38606 617 aa22.86■■□□□ 1.25
CMTM3-205ENST00000562707 TNNT2P45379 298 aaPredicted RBP22.86■■□□□ 1.25
CMTM3-205ENST00000562707 GNPATO15228 680 aa22.84■■□□□ 1.25
CMTM3-205ENST00000562707 EIF4A2Q14240 407 aaKnown RBP22.84■■□□□ 1.25
CMTM3-205ENST00000562707 C4BP0C0L5 1744 aa22.84■■□□□ 1.25
CMTM3-205ENST00000562707 GOLGB1Q14789 3259 aaKnown RBP22.83■■□□□ 1.25
CMTM3-205ENST00000562707 ITPK1Q13572 414 aa22.83■■□□□ 1.25
CMTM3-205ENST00000562707 ATG3Q9NT62 314 aa22.83■■□□□ 1.25
CMTM3-205ENST00000562707 IGSF1Q8N6C5 1336 aa22.82■■□□□ 1.24
CMTM3-205ENST00000562707 PKD1L3Q7Z443 1732 aa22.82■■□□□ 1.24
CMTM3-205ENST00000562707 ATP10DQ9P241 1426 aa22.82■■□□□ 1.24
CMTM3-205ENST00000562707 GPBP1L1Q9HC44 474 aaPredicted RBP22.81■■□□□ 1.24
CMTM3-205ENST00000562707 TOGARAM1Q9Y4F4 1720 aa22.81■■□□□ 1.24
CMTM3-205ENST00000562707 CLSPNQ9HAW4 1339 aa22.8■■□□□ 1.24
CMTM3-205ENST00000562707 ERVV-2B6SEH9 535 aa22.79■■□□□ 1.24
CMTM3-205ENST00000562707 HSP90AB1P08238 724 aaKnown RBP22.79■■□□□ 1.24
CMTM3-205ENST00000562707 PCGF6Q9BYE7 350 aa22.79■■□□□ 1.24
CMTM3-205ENST00000562707 WWC3Q9ULE0 1092 aa22.79■■□□□ 1.24
CMTM3-205ENST00000562707 PLEKHG2Q9H7P9 1386 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms