RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 MYH16Q9H6N6 1097 aa18.2■□□□□ 0.5
CLK3-209ENST00000562670 NLRP2Q9NX02 1062 aa18.2■□□□□ 0.5
CLK3-209ENST00000562670 PLEKHO1Q53GL0 409 aaPredicted RBP18.18■□□□□ 0.5
CLK3-209ENST00000562670 RAPGEF4Q8WZA2 1011 aa18.18■□□□□ 0.5
CLK3-209ENST00000562670 SPINK5Q9NQ38 1064 aaPredicted RBP18.18■□□□□ 0.5
CLK3-209ENST00000562670 WNK3Q9BYP7 1800 aa18.17■□□□□ 0.5
CLK3-209ENST00000562670 IFT57Q9NWB7 429 aa18.17■□□□□ 0.5
CLK3-209ENST00000562670 BTG4Q9NY30 223 aa18.17■□□□□ 0.5
CLK3-209ENST00000562670 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.17■□□□□ 0.5
CLK3-209ENST00000562670 TATP17735 454 aaPredicted RBP18.16■□□□□ 0.5
CLK3-209ENST00000562670 TOM1L2Q6ZVM7 507 aa18.16■□□□□ 0.5
CLK3-209ENST00000562670 LRP6O75581 1613 aa18.16■□□□□ 0.5
CLK3-209ENST00000562670 CEMIPQ8WUJ3 1361 aa18.16■□□□□ 0.5
CLK3-209ENST00000562670 DISP2A7MBM2 1401 aa18.15■□□□□ 0.5
CLK3-209ENST00000562670 GNAT3A8MTJ3 354 aa18.15■□□□□ 0.5
CLK3-209ENST00000562670 ZNF853P0CG23 659 aa18.15■□□□□ 0.5
CLK3-209ENST00000562670 HSPA1LP34931 641 aa18.15■□□□□ 0.5
CLK3-209ENST00000562670 CT47B1P0C2W7 299 aaPredicted RBP18.14■□□□□ 0.49
CLK3-209ENST00000562670 EVA1CP58658 441 aa18.14■□□□□ 0.49
CLK3-209ENST00000562670 GNAI1P63096 354 aa18.14■□□□□ 0.49
CLK3-209ENST00000562670 AKAP4Q5JQC9 854 aa18.14■□□□□ 0.49
CLK3-209ENST00000562670 LARP1Q6PKG0 1096 aaKnown RBP18.14■□□□□ 0.49
CLK3-209ENST00000562670 RTF1Q92541 710 aaKnown RBP18.14■□□□□ 0.49
CLK3-209ENST00000562670 RNF123Q5XPI4 1314 aa18.14■□□□□ 0.49
CLK3-209ENST00000562670 FANCIQ9NVI1 1328 aa18.14■□□□□ 0.49
CLK3-209ENST00000562670 CFAP44Q96MT7 982 aa18.13■□□□□ 0.49
CLK3-209ENST00000562670 SPG7Q9UQ90 795 aa18.13■□□□□ 0.49
CLK3-209ENST00000562670 ZNF530Q6P9A1 599 aaPredicted RBP18.12■□□□□ 0.49
CLK3-209ENST00000562670 BABAM1Q9NWV8 329 aa18.12■□□□□ 0.49
CLK3-209ENST00000562670 MRC1P22897 1456 aa18.12■□□□□ 0.49
CLK3-209ENST00000562670 SHANK3Q9BYB0 1731 aa18.12■□□□□ 0.49
CLK3-209ENST00000562670 ADAMTS2O95450 1211 aa18.11■□□□□ 0.49
CLK3-209ENST00000562670 STRN4Q9NRL3 753 aa18.11■□□□□ 0.49
CLK3-209ENST00000562670 RCAN3Q9UKA8 241 aa18.11■□□□□ 0.49
CLK3-209ENST00000562670 IL2RBP14784 551 aa18.1■□□□□ 0.49
CLK3-209ENST00000562670 C1orf141Q5JVX7 400 aa18.1■□□□□ 0.49
CLK3-209ENST00000562670 THRAP3Q9Y2W1 955 aaKnown RBP18.1■□□□□ 0.49
CLK3-209ENST00000562670 NUTM2BA6NNL0 878 aaPredicted RBP18.09■□□□□ 0.49
CLK3-209ENST00000562670 NUTM2EB1AL46 878 aaPredicted RBP18.09■□□□□ 0.49
CLK3-209ENST00000562670 MCM10Q7L590 875 aa18.09■□□□□ 0.49
CLK3-209ENST00000562670 NUTM2AQ8IVF1 878 aaPredicted RBP18.09■□□□□ 0.49
CLK3-209ENST00000562670 FNBP4Q8N3X1 1017 aaPredicted RBP18.09■□□□□ 0.49
CLK3-209ENST00000562670 THUMPD2Q9BTF0 503 aaKnown RBP18.09■□□□□ 0.49
CLK3-209ENST00000562670 SIPA1L3O60292 1781 aaPredicted RBP18.09■□□□□ 0.49
CLK3-209ENST00000562670 SCN11AQ9UI33 1791 aa18.09■□□□□ 0.49
CLK3-209ENST00000562670 BCL9LQ86UU0 1499 aa18.08■□□□□ 0.49
CLK3-209ENST00000562670 PCDH11XQ9BZA7 1347 aa18.08■□□□□ 0.49
CLK3-209ENST00000562670 PCDH11YQ9BZA8 1340 aa18.08■□□□□ 0.49
CLK3-209ENST00000562670 VIRMAQ69YN4 1812 aaKnown RBP18.08■□□□□ 0.48
CLK3-209ENST00000562670 CHL1O00533 1208 aa18.08■□□□□ 0.48
CLK3-209ENST00000562670 CDCA7Q9BWT1 371 aaPredicted RBP18.08■□□□□ 0.48
CLK3-209ENST00000562670 SPATA31A1Q5TZJ5 1347 aa18.07■□□□□ 0.48
CLK3-209ENST00000562670 HSP90AB1P08238 724 aaKnown RBP18.07■□□□□ 0.48
CLK3-209ENST00000562670 DCTN1Q14203 1278 aa18.07■□□□□ 0.48
CLK3-209ENST00000562670 IFNL2Q8IZJ0 200 aa18.07■□□□□ 0.48
CLK3-209ENST00000562670 IL17REQ8NFR9 667 aa18.07■□□□□ 0.48
CLK3-209ENST00000562670 ZNF428Q96B54 188 aa18.07■□□□□ 0.48
CLK3-209ENST00000562670 TNS2Q63HR2 1409 aa18.06■□□□□ 0.48
CLK3-209ENST00000562670 SPATA31A5Q5VU36 1347 aa18.06■□□□□ 0.48
CLK3-209ENST00000562670 SPATA31A7Q8IWB4 1347 aa18.06■□□□□ 0.48
CLK3-209ENST00000562670 PHKG2P15735 406 aa18.06■□□□□ 0.48
CLK3-209ENST00000562670 UNC5CLQ8IV45 518 aa18.06■□□□□ 0.48
CLK3-209ENST00000562670 TSR2Q969E8 191 aaKnown RBP18.06■□□□□ 0.48
CLK3-209ENST00000562670 MBIPQ9NS73 344 aa18.06■□□□□ 0.48
CLK3-209ENST00000562670 KDM3BQ7LBC6 1761 aa18.06■□□□□ 0.48
CLK3-209ENST00000562670 KDM6AO15550 1401 aaPredicted RBP18.06■□□□□ 0.48
CLK3-209ENST00000562670 SUPT16HQ9Y5B9 1047 aaKnown RBP18.05■□□□□ 0.48
CLK3-209ENST00000562670 RNMTO43148 476 aaKnown RBP18.04■□□□□ 0.48
CLK3-209ENST00000562670 VPS72Q15906 364 aa18.04■□□□□ 0.48
CLK3-209ENST00000562670 BARGINQ6ZT62 677 aa18.04■□□□□ 0.48
CLK3-209ENST00000562670 ZCRB1Q8TBF4 217 aaKnown RBP18.04■□□□□ 0.48
CLK3-209ENST00000562670 SOS1Q07889 1333 aaPredicted RBP18.03■□□□□ 0.48
CLK3-209ENST00000562670 CYP27B1O15528 508 aa18.03■□□□□ 0.48
CLK3-209ENST00000562670 NKX1-1Q15270 411 aaPredicted RBP18.03■□□□□ 0.48
CLK3-209ENST00000562670 DCAF5Q96JK2 942 aa18.03■□□□□ 0.48
CLK3-209ENST00000562670 C8orf37Q96NL8 207 aa18.03■□□□□ 0.48
CLK3-209ENST00000562670 EXOSC9Q06265 439 aaKnown RBP18.02■□□□□ 0.48
CLK3-209ENST00000562670 TAF7Q15545 349 aaPredicted RBP18.02■□□□□ 0.48
CLK3-209ENST00000562670 NGLY1Q96IV0 654 aa18.02■□□□□ 0.48
CLK3-209ENST00000562670 NEFLP07196 543 aa18.01■□□□□ 0.47
CLK3-209ENST00000562670 RRP1P56182 461 aaKnown RBP18.01■□□□□ 0.47
CLK3-209ENST00000562670 TEFQ10587 303 aa18■□□□□ 0.47
CLK3-209ENST00000562670 TSPYL4Q9UJ04 414 aa18■□□□□ 0.47
CLK3-209ENST00000562670 LAS1LQ9Y4W2 734 aaKnown RBP18■□□□□ 0.47
CLK3-209ENST00000562670 THSD7AQ9UPZ6 1657 aa17.99■□□□□ 0.47
CLK3-209ENST00000562670 RARSP54136 660 aaKnown RBP17.99■□□□□ 0.47
CLK3-209ENST00000562670 MPRIPQ6WCQ1 1025 aa17.99■□□□□ 0.47
CLK3-209ENST00000562670 LGR6Q9HBX8 967 aa17.99■□□□□ 0.47
CLK3-209ENST00000562670 ATRNO75882 1429 aa17.98■□□□□ 0.47
CLK3-209ENST00000562670 BRPF1P55201 1214 aaPredicted RBP17.98■□□□□ 0.47
CLK3-209ENST00000562670 ALDH1L2Q3SY69 923 aa17.98■□□□□ 0.47
CLK3-209ENST00000562670 ERICH6BQ5W0A0 696 aa17.98■□□□□ 0.47
CLK3-209ENST00000562670 TOGARAM1Q9Y4F4 1720 aa17.98■□□□□ 0.47
CLK3-209ENST00000562670 PAPPAQ13219 1627 aa17.98■□□□□ 0.47
CLK3-209ENST00000562670 MEX3CQ5U5Q3 659 aaKnown RBP17.97■□□□□ 0.47
CLK3-209ENST00000562670 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.97■□□□□ 0.47
CLK3-209ENST00000562670 SLC52A2Q9HAB3 445 aa17.97■□□□□ 0.47
CLK3-209ENST00000562670 USP35Q9P2H5 1018 aa17.97■□□□□ 0.47
CLK3-209ENST00000562670 USP21Q9UK80 565 aa17.97■□□□□ 0.47
CLK3-209ENST00000562670 ERVV-2B6SEH9 535 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms