RNA–Protein interactions for RNA: ENST00000562668.1

SMG1-206, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 449 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-206ENST00000562668 ITGA6P23229 1130 aa9.63□□□□□ -0.87
SMG1-206ENST00000562668 SCTRP47872 440 aa9.63□□□□□ -0.87
SMG1-206ENST00000562668 CYP2U1Q7Z449 544 aa9.63□□□□□ -0.87
SMG1-206ENST00000562668 NANOS1Q8WY41 292 aaKnown RBP9.63□□□□□ -0.87
SMG1-206ENST00000562668 SENP3-EIF4A1A0A087X0R7 540 aa9.62□□□□□ -0.87
SMG1-206ENST00000562668 RNF144AP50876 292 aaPredicted RBP9.62□□□□□ -0.87
SMG1-206ENST00000562668 LYSMD3Q7Z3D4 306 aa9.62□□□□□ -0.87
SMG1-206ENST00000562668 MEN1O00255 615 aa9.61□□□□□ -0.87
SMG1-206ENST00000562668 IRF5Q13568 498 aa9.61□□□□□ -0.87
SMG1-206ENST00000562668 GPC1P35052 558 aa9.6□□□□□ -0.87
SMG1-206ENST00000562668 GPR161Q8N6U8 529 aaKnown RBP9.6□□□□□ -0.87
SMG1-206ENST00000562668 OSBPL3Q9H4L5 887 aa9.6□□□□□ -0.87
SMG1-206ENST00000562668 A0A1W2PRU2 124 aa9.59□□□□□ -0.87
SMG1-206ENST00000562668 TRAK2O60296 914 aa9.59□□□□□ -0.87
SMG1-206ENST00000562668 EIF4G2P78344 907 aaKnown RBP eCLIP9.59□□□□□ -0.87
SMG1-206ENST00000562668 KRT76Q01546 638 aa9.59□□□□□ -0.87
SMG1-206ENST00000562668 MCM6Q14566 821 aa9.59□□□□□ -0.87
SMG1-206ENST00000562668 CEP126Q9P2H0 1117 aa9.59□□□□□ -0.87
SMG1-206ENST00000562668 CDC14CA4D256 554 aa9.58□□□□□ -0.88
SMG1-206ENST00000562668 CCDC85AQ96PX6 553 aaPredicted RBP9.58□□□□□ -0.88
SMG1-206ENST00000562668 CLN3Q13286 438 aa9.57□□□□□ -0.88
SMG1-206ENST00000562668 PRICKLE2Q7Z3G6 844 aa9.57□□□□□ -0.88
SMG1-206ENST00000562668 NLRP3Q96P20 1036 aa9.57□□□□□ -0.88
SMG1-206ENST00000562668 COL25A1Q9BXS0 654 aaPredicted RBP9.57□□□□□ -0.88
SMG1-206ENST00000562668 ESF1Q9H501 851 aaKnown RBP9.57□□□□□ -0.88
SMG1-206ENST00000562668 GDPD2Q9HCC8 539 aa9.57□□□□□ -0.88
SMG1-206ENST00000562668 ARHGEF10LQ9HCE6 1279 aa9.57□□□□□ -0.88
SMG1-206ENST00000562668 MYCP01106 439 aaPredicted RBP9.56□□□□□ -0.88
SMG1-206ENST00000562668 RHOQP17081 205 aa9.56□□□□□ -0.88
SMG1-206ENST00000562668 ABL2P42684 1182 aa9.56□□□□□ -0.88
SMG1-206ENST00000562668 SV2AQ7L0J3 742 aa9.56□□□□□ -0.88
SMG1-206ENST00000562668 VWA5B2Q8N398 1253 aa9.56□□□□□ -0.88
SMG1-206ENST00000562668 CNTNAP3BQ96NU0 1288 aa9.56□□□□□ -0.88
SMG1-206ENST00000562668 CNTNAP3Q9BZ76 1288 aa9.56□□□□□ -0.88
SMG1-206ENST00000562668 VAC14Q08AM6 782 aa9.55□□□□□ -0.88
SMG1-206ENST00000562668 SLC27A3Q5K4L6 730 aa9.54□□□□□ -0.88
SMG1-206ENST00000562668 CDCA7Q9BWT1 371 aaPredicted RBP9.54□□□□□ -0.88
SMG1-206ENST00000562668 RAB6BQ9NRW1 208 aa9.54□□□□□ -0.88
SMG1-206ENST00000562668 GNRH1P01148 92 aa9.53□□□□□ -0.88
SMG1-206ENST00000562668 SLFNL1Q499Z3 407 aa9.53□□□□□ -0.88
SMG1-206ENST00000562668 RNFT1Q5M7Z0 435 aa9.53□□□□□ -0.88
SMG1-206ENST00000562668 CUEDC1Q9NWM3 386 aaPredicted RBP9.53□□□□□ -0.88
SMG1-206ENST00000562668 DOLKQ9UPQ8 538 aa9.53□□□□□ -0.88
SMG1-206ENST00000562668 WASHC4Q2M389 1173 aa9.52□□□□□ -0.89
SMG1-206ENST00000562668 RNF135Q8IUD6 432 aa9.52□□□□□ -0.89
SMG1-206ENST00000562668 GRIP2Q9C0E4 1043 aa9.52□□□□□ -0.89
SMG1-206ENST00000562668 SPATA31C2B4DYI2 1134 aa9.51□□□□□ -0.89
SMG1-206ENST00000562668 PHTF2Q8N3S3 785 aa9.51□□□□□ -0.89
SMG1-206ENST00000562668 IL2RAP01589 272 aa9.5□□□□□ -0.89
SMG1-206ENST00000562668 POU4F2Q12837 409 aa9.5□□□□□ -0.89
SMG1-206ENST00000562668 NBPF10Q6P3W6 841 aaKnown RBP9.5□□□□□ -0.89
SMG1-206ENST00000562668 NBPF15Q8N660 670 aa9.5□□□□□ -0.89
SMG1-206ENST00000562668 ZNF837Q96EG3 531 aaPredicted RBP9.5□□□□□ -0.89
SMG1-206ENST00000562668 ESYT1Q9BSJ8 1104 aa9.5□□□□□ -0.89
SMG1-206ENST00000562668 DYRK1BQ9Y463 629 aa9.5□□□□□ -0.89
SMG1-206ENST00000562668 TRIM22Q8IYM9 498 aa9.49□□□□□ -0.89
SMG1-206ENST00000562668 CNKSR1Q969H4 720 aa9.49□□□□□ -0.89
SMG1-206ENST00000562668 CHIC2Q9UKJ5 165 aa9.49□□□□□ -0.89
SMG1-206ENST00000562668 WASLO00401 505 aaPredicted RBP9.48□□□□□ -0.89
SMG1-206ENST00000562668 SOX11P35716 441 aa9.48□□□□□ -0.89
SMG1-206ENST00000562668 OXLD1Q5BKU9 147 aa9.48□□□□□ -0.89
SMG1-206ENST00000562668 TAS1R3Q7RTX0 852 aa9.48□□□□□ -0.89
SMG1-206ENST00000562668 GMCL1Q96IK5 515 aa9.48□□□□□ -0.89
SMG1-206ENST00000562668 COG6Q9Y2V7 657 aa9.48□□□□□ -0.89
SMG1-206ENST00000562668 SLURP2P0DP57 97 aa9.47□□□□□ -0.89
SMG1-206ENST00000562668 TSGA10IPQ3SY00 556 aa9.47□□□□□ -0.89
SMG1-206ENST00000562668 WDR44Q5JSH3 913 aa9.47□□□□□ -0.89
SMG1-206ENST00000562668 RIPOR1Q6ZS17 1223 aa9.47□□□□□ -0.89
SMG1-206ENST00000562668 USP4Q13107 963 aa9.46□□□□□ -0.9
SMG1-206ENST00000562668 GAS6Q14393 721 aa9.46□□□□□ -0.9
SMG1-206ENST00000562668 ESCO1Q5FWF5 840 aa9.46□□□□□ -0.9
SMG1-206ENST00000562668 SIRT1Q96EB6 747 aa9.46□□□□□ -0.9
SMG1-206ENST00000562668 XAGE2Q96GT9 111 aa9.46□□□□□ -0.9
SMG1-206ENST00000562668 GAS2L1Q99501 681 aaPredicted RBP9.46□□□□□ -0.9
SMG1-206ENST00000562668 HRH3Q9Y5N1 445 aa9.46□□□□□ -0.9
SMG1-206ENST00000562668 CENPCQ03188 943 aa9.45□□□□□ -0.9
SMG1-206ENST00000562668 SEMA3FQ13275 785 aa9.45□□□□□ -0.9
SMG1-206ENST00000562668 ZSCAN10Q96SZ4 725 aaPredicted RBP9.45□□□□□ -0.9
SMG1-206ENST00000562668 FHDC1Q9C0D6 1143 aaPredicted RBP9.45□□□□□ -0.9
SMG1-206ENST00000562668 TIMMDC1Q9NPL8 285 aa9.45□□□□□ -0.9
SMG1-206ENST00000562668 H7C1W4 665 aa9.44□□□□□ -0.9
SMG1-206ENST00000562668 ZNF385CQ66K41 422 aaPredicted RBP9.44□□□□□ -0.9
SMG1-206ENST00000562668 SVOPQ8N4V2 548 aa9.44□□□□□ -0.9
SMG1-206ENST00000562668 PLPP7Q8NBV4 271 aa9.44□□□□□ -0.9
SMG1-206ENST00000562668 ETNK1Q9HBU6 452 aa9.44□□□□□ -0.9
SMG1-206ENST00000562668 DBN1Q16643 649 aa9.43□□□□□ -0.9
SMG1-206ENST00000562668 MAP7D1Q3KQU3 841 aa9.43□□□□□ -0.9
SMG1-206ENST00000562668 GPR25O00155 361 aa9.42□□□□□ -0.9
SMG1-206ENST00000562668 ADAMTS2O95450 1211 aa9.42□□□□□ -0.9
SMG1-206ENST00000562668 STAU1O95793 577 aaKnown RBP9.42□□□□□ -0.9
SMG1-206ENST00000562668 GTF2E1P29083 439 aaPredicted RBP9.42□□□□□ -0.9
SMG1-206ENST00000562668 SRSF11Q05519 484 aaKnown RBP9.42□□□□□ -0.9
SMG1-206ENST00000562668 GNASQ5JWF2 1037 aa9.42□□□□□ -0.9
SMG1-206ENST00000562668 FOXR1Q6PIV2 292 aa9.42□□□□□ -0.9
SMG1-206ENST00000562668 WHAMMQ8TF30 809 aa9.42□□□□□ -0.9
SMG1-206ENST00000562668 F11P03951 625 aa9.41□□□□□ -0.9
SMG1-206ENST00000562668 TLR1Q15399 786 aa9.41□□□□□ -0.9
SMG1-206ENST00000562668 TMEM214Q6NUQ4 689 aaKnown RBP9.41□□□□□ -0.9
SMG1-206ENST00000562668 WWC1Q8IX03 1113 aa9.41□□□□□ -0.9
SMG1-206ENST00000562668 GTPBP3Q969Y2 492 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms