RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS39-204ENST00000561818 CHL1O00533 1208 aa9.55□□□□□ -0.88
VPS39-204ENST00000561818 FOXO3O43524 673 aa9.55□□□□□ -0.88
VPS39-204ENST00000561818 FRAT1Q92837 279 aaPredicted RBP9.55□□□□□ -0.88
VPS39-204ENST00000561818 PHACTR3Q96KR7 559 aa9.55□□□□□ -0.88
VPS39-204ENST00000561818 EYA1Q99502 592 aa9.55□□□□□ -0.88
VPS39-204ENST00000561818 LRRC37A3O60309 1634 aa9.55□□□□□ -0.88
VPS39-204ENST00000561818 KDM2BQ8NHM5 1336 aa9.55□□□□□ -0.88
VPS39-204ENST00000561818 BCAR3O75815 825 aa9.54□□□□□ -0.88
VPS39-204ENST00000561818 HSP90AB1P08238 724 aaKnown RBP9.54□□□□□ -0.88
VPS39-204ENST00000561818 C1orf141Q5JVX7 400 aa9.54□□□□□ -0.88
VPS39-204ENST00000561818 TSHZ2Q9NRE2 1034 aa9.54□□□□□ -0.88
VPS39-204ENST00000561818 DLG5Q8TDM6 1919 aa9.53□□□□□ -0.88
VPS39-204ENST00000561818 PLIN1O60240 522 aa9.53□□□□□ -0.88
VPS39-204ENST00000561818 AKAP4Q5JQC9 854 aa9.53□□□□□ -0.88
VPS39-204ENST00000561818 TSR2Q969E8 191 aaKnown RBP9.53□□□□□ -0.88
VPS39-204ENST00000561818 STK31Q9BXU1 1019 aa9.53□□□□□ -0.88
VPS39-204ENST00000561818 MBIPQ9NS73 344 aa9.53□□□□□ -0.88
VPS39-204ENST00000561818 HDAC5Q9UQL6 1122 aa9.53□□□□□ -0.88
VPS39-204ENST00000561818 SPATA31A3Q5VYP0 1347 aa9.53□□□□□ -0.88
VPS39-204ENST00000561818 PXDNQ92626 1479 aa9.53□□□□□ -0.88
VPS39-204ENST00000561818 STRCQ7RTU9 1775 aa9.52□□□□□ -0.88
VPS39-204ENST00000561818 CACNA1FO60840 1977 aa9.52□□□□□ -0.89
VPS39-204ENST00000561818 VAMP4O75379 141 aa9.52□□□□□ -0.89
VPS39-204ENST00000561818 CRB1P82279 1406 aa9.52□□□□□ -0.89
VPS39-204ENST00000561818 HDAC1Q13547 482 aaPredicted RBP9.52□□□□□ -0.89
VPS39-204ENST00000561818 CCDC30Q5VVM6 783 aa9.52□□□□□ -0.89
VPS39-204ENST00000561818 SSH1Q8WYL5 1049 aa9.52□□□□□ -0.89
VPS39-204ENST00000561818 ORAI2Q96SN7 254 aa9.52□□□□□ -0.89
VPS39-204ENST00000561818 TSPYL4Q9UJ04 414 aa9.52□□□□□ -0.89
VPS39-204ENST00000561818 LAS1LQ9Y4W2 734 aaKnown RBP9.52□□□□□ -0.89
VPS39-204ENST00000561818 ERBB3P21860 1342 aa9.52□□□□□ -0.89
VPS39-204ENST00000561818 CEMIPQ8WUJ3 1361 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 SENP3-EIF4A1A0A087X0R7 540 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 KDM4FA0A1W2PPD8 638 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 SOX12O15370 315 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 TRIM27P14373 513 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 ANP32AP39687 249 aaKnown RBP9.51□□□□□ -0.89
VPS39-204ENST00000561818 TAF7Q15545 349 aaPredicted RBP9.51□□□□□ -0.89
VPS39-204ENST00000561818 RAPGEF4Q8WZA2 1011 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 SPG7Q9UQ90 795 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 PXDNLA1KZ92 1463 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 ABCC4O15439 1325 aa9.51□□□□□ -0.89
VPS39-204ENST00000561818 CAPN15O75808 1086 aa9.5□□□□□ -0.89
VPS39-204ENST00000561818 MTHFSDQ2M296 383 aaKnown RBP9.5□□□□□ -0.89
VPS39-204ENST00000561818 AEBP1Q8IUX7 1158 aa9.5□□□□□ -0.89
VPS39-204ENST00000561818 ITPRIPQ8IWB1 547 aa9.5□□□□□ -0.89
VPS39-204ENST00000561818 ANKRD24Q8TF21 1146 aa9.5□□□□□ -0.89
VPS39-204ENST00000561818 COG6Q9Y2V7 657 aa9.5□□□□□ -0.89
VPS39-204ENST00000561818 LMO7Q8WWI1 1683 aa9.5□□□□□ -0.89
VPS39-204ENST00000561818 SOS2Q07890 1332 aaPredicted RBP9.5□□□□□ -0.89
VPS39-204ENST00000561818 STRCP1A6NGW2 1772 aa9.5□□□□□ -0.89
VPS39-204ENST00000561818 FBLN1P23142 703 aa9.49□□□□□ -0.89
VPS39-204ENST00000561818 CCT4P50991 539 aaKnown RBP9.49□□□□□ -0.89
VPS39-204ENST00000561818 TEFQ10587 303 aa9.49□□□□□ -0.89
VPS39-204ENST00000561818 C20orf194Q5TEA3 1177 aa9.49□□□□□ -0.89
VPS39-204ENST00000561818 LMOD2Q6P5Q4 547 aa9.49□□□□□ -0.89
VPS39-204ENST00000561818 MRPL50Q8N5N7 158 aaKnown RBP9.49□□□□□ -0.89
VPS39-204ENST00000561818 GCC1Q96CN9 775 aa9.49□□□□□ -0.89
VPS39-204ENST00000561818 SLAIN2Q9P270 581 aa9.49□□□□□ -0.89
VPS39-204ENST00000561818 NOB1Q9ULX3 412 aaKnown RBP9.49□□□□□ -0.89
VPS39-204ENST00000561818 IBTKQ9P2D0 1353 aaPredicted RBP9.49□□□□□ -0.89
VPS39-204ENST00000561818 TATP17735 454 aaPredicted RBP9.48□□□□□ -0.89
VPS39-204ENST00000561818 BRINP3Q76B58 766 aa9.48□□□□□ -0.89
VPS39-204ENST00000561818 ZBTB47Q9UFB7 747 aaPredicted RBP9.48□□□□□ -0.89
VPS39-204ENST00000561818 RBM19Q9Y4C8 960 aaKnown RBP9.48□□□□□ -0.89
VPS39-204ENST00000561818 NHSL1Q5SYE7 1610 aa9.47□□□□□ -0.89
VPS39-204ENST00000561818 HMMRO75330 724 aa9.47□□□□□ -0.89
VPS39-204ENST00000561818 DSG3P32926 999 aa9.47□□□□□ -0.89
VPS39-204ENST00000561818 HSPA2P54652 639 aa9.47□□□□□ -0.89
VPS39-204ENST00000561818 INTS3Q68E01 1043 aaKnown RBP9.47□□□□□ -0.89
VPS39-204ENST00000561818 PANK1Q8TE04 598 aa9.47□□□□□ -0.89
VPS39-204ENST00000561818 DDRGK1Q96HY6 314 aa9.47□□□□□ -0.89
VPS39-204ENST00000561818 UPF2Q9HAU5 1272 aaKnown RBP9.47□□□□□ -0.89
VPS39-204ENST00000561818 FAM161AQ3B820 660 aa9.46□□□□□ -0.9
VPS39-204ENST00000561818 NUTM2GQ5VZR2 741 aa9.46□□□□□ -0.9
VPS39-204ENST00000561818 ZNF530Q6P9A1 599 aaPredicted RBP9.46□□□□□ -0.9
VPS39-204ENST00000561818 MCM10Q7L590 875 aa9.46□□□□□ -0.9
VPS39-204ENST00000561818 BCL2L13Q9BXK5 485 aa9.46□□□□□ -0.9
VPS39-204ENST00000561818 ZBTB40Q9NUA8 1239 aa9.46□□□□□ -0.9
VPS39-204ENST00000561818 XIRP1Q702N8 1843 aaKnown RBP9.46□□□□□ -0.9
VPS39-204ENST00000561818 ADAMTS7Q9UKP4 1686 aa9.45□□□□□ -0.9
VPS39-204ENST00000561818 CRYBG1Q9Y4K1 1723 aa9.45□□□□□ -0.9
VPS39-204ENST00000561818 GNAI3P08754 354 aa9.45□□□□□ -0.9
VPS39-204ENST00000561818 CSB-PGBD3P0DP91 1061 aa9.45□□□□□ -0.9
VPS39-204ENST00000561818 MYT1Q01538 1121 aa9.45□□□□□ -0.9
VPS39-204ENST00000561818 NBPF6Q5VWK0 638 aa9.45□□□□□ -0.9
VPS39-204ENST00000561818 RPAP2Q8IXW5 612 aaPredicted RBP9.45□□□□□ -0.9
VPS39-204ENST00000561818 NBPF4Q96M43 638 aa9.45□□□□□ -0.9
VPS39-204ENST00000561818 AHDC1Q5TGY3 1603 aaPredicted RBP9.45□□□□□ -0.9
VPS39-204ENST00000561818 PARP4Q9UKK3 1724 aaKnown RBP9.45□□□□□ -0.9
VPS39-204ENST00000561818 FAM83GA6ND36 823 aa9.44□□□□□ -0.9
VPS39-204ENST00000561818 IFNL2Q8IZJ0 200 aa9.44□□□□□ -0.9
VPS39-204ENST00000561818 TMEM57Q8N5G2 664 aa9.44□□□□□ -0.9
VPS39-204ENST00000561818 LRRC59Q96AG4 307 aaKnown RBP9.44□□□□□ -0.9
VPS39-204ENST00000561818 LTV1Q96GA3 475 aaPredicted RBP9.44□□□□□ -0.9
VPS39-204ENST00000561818 DCAF5Q96JK2 942 aa9.44□□□□□ -0.9
VPS39-204ENST00000561818 WDR17Q8IZU2 1322 aa9.44□□□□□ -0.9
VPS39-204ENST00000561818 MRC1P22897 1456 aa9.43□□□□□ -0.9
VPS39-204ENST00000561818 PCDH11XQ9BZA7 1347 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms