RNA–Protein interactions for RNA: ENST00000561743.5

USB1-205, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 3 BASIC

Gene USB1, Length 1,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-205ENST00000561743 HSP90AB2PQ58FF8 381 aa18.71■□□□□ 0.59
USB1-205ENST00000561743 CGNL1Q0VF96 1302 aa18.71■□□□□ 0.59
USB1-205ENST00000561743 DDX54Q8TDD1 881 aaKnown RBP18.7■□□□□ 0.58
USB1-205ENST00000561743 EMILIN1Q9Y6C2 1016 aa18.7■□□□□ 0.58
USB1-205ENST00000561743 USHBP1Q8N6Y0 703 aa18.69■□□□□ 0.58
USB1-205ENST00000561743 PKD1L3Q7Z443 1732 aa18.69■□□□□ 0.58
USB1-205ENST00000561743 LY75O60449 1722 aa18.68■□□□□ 0.58
USB1-205ENST00000561743 ZCRB1Q8TBF4 217 aaKnown RBP18.67■□□□□ 0.58
USB1-205ENST00000561743 NCAPD2Q15021 1401 aa18.66■□□□□ 0.58
USB1-205ENST00000561743 RAPGEF4Q8WZA2 1011 aa18.64■□□□□ 0.57
USB1-205ENST00000561743 PDGFDQ9GZP0 370 aaPredicted RBP18.64■□□□□ 0.57
USB1-205ENST00000561743 PANK3Q9H999 370 aa18.64■□□□□ 0.57
USB1-205ENST00000561743 NSD2O96028 1365 aa18.64■□□□□ 0.57
USB1-205ENST00000561743 QSER1Q2KHR3 1735 aa18.63■□□□□ 0.57
USB1-205ENST00000561743 TOGARAM1Q9Y4F4 1720 aa18.63■□□□□ 0.57
USB1-205ENST00000561743 PPM1GO15355 546 aaPredicted RBP18.63■□□□□ 0.57
USB1-205ENST00000561743 SPON1Q9HCB6 807 aa18.63■□□□□ 0.57
USB1-205ENST00000561743 STK32BQ9NY57 414 aa18.63■□□□□ 0.57
USB1-205ENST00000561743 TUBGCP6Q96RT7 1819 aa18.63■□□□□ 0.57
USB1-205ENST00000561743 TATP17735 454 aaPredicted RBP18.62■□□□□ 0.57
USB1-205ENST00000561743 PRIM1P49642 420 aaKnown RBP18.62■□□□□ 0.57
USB1-205ENST00000561743 SLC15A2Q16348 729 aa18.62■□□□□ 0.57
USB1-205ENST00000561743 POLKQ9UBT6 870 aa18.62■□□□□ 0.57
USB1-205ENST00000561743 WASHC2AQ641Q2 1341 aa18.62■□□□□ 0.57
USB1-205ENST00000561743 ITGB4P16144 1822 aa18.62■□□□□ 0.57
USB1-205ENST00000561743 SYTL4Q96C24 671 aaPredicted RBP18.61■□□□□ 0.57
USB1-205ENST00000561743 LRRC4BQ9NT99 713 aa18.6■□□□□ 0.57
USB1-205ENST00000561743 PCDH11XQ9BZA7 1347 aa18.59■□□□□ 0.57
USB1-205ENST00000561743 PCDH11YQ9BZA8 1340 aa18.59■□□□□ 0.57
USB1-205ENST00000561743 TNNT2P45379 298 aaPredicted RBP18.59■□□□□ 0.57
USB1-205ENST00000561743 ZBTB7AO95365 584 aa18.57■□□□□ 0.56
USB1-205ENST00000561743 ZNF827Q17R98 1081 aa18.57■□□□□ 0.56
USB1-205ENST00000561743 SLC27A3Q5K4L6 730 aa18.57■□□□□ 0.56
USB1-205ENST00000561743 EYA1Q99502 592 aa18.57■□□□□ 0.56
USB1-205ENST00000561743 CYP27B1O15528 508 aa18.56■□□□□ 0.56
USB1-205ENST00000561743 C5P01031 1676 aa18.56■□□□□ 0.56
USB1-205ENST00000561743 TAF1LQ8IZX4 1826 aa18.56■□□□□ 0.56
USB1-205ENST00000561743 KIF7Q2M1P5 1343 aa18.55■□□□□ 0.56
USB1-205ENST00000561743 PPP1R1BQ9UD71 204 aaPredicted RBP18.55■□□□□ 0.56
USB1-205ENST00000561743 KCNQ4P56696 695 aa18.54■□□□□ 0.56
USB1-205ENST00000561743 EIF4A2Q14240 407 aaKnown RBP18.54■□□□□ 0.56
USB1-205ENST00000561743 AKT1S1Q96B36 256 aa18.54■□□□□ 0.56
USB1-205ENST00000561743 COL24A1Q17RW2 1714 aa18.54■□□□□ 0.56
USB1-205ENST00000561743 PTGER2P43116 358 aa18.53■□□□□ 0.56
USB1-205ENST00000561743 MTFR1LQ9H019 292 aa18.52■□□□□ 0.56
USB1-205ENST00000561743 ATF5Q9Y2D1 282 aaPredicted RBP18.52■□□□□ 0.56
USB1-205ENST00000561743 MORC1Q86VD1 984 aa18.51■□□□□ 0.55
USB1-205ENST00000561743 SPG7Q9UQ90 795 aa18.51■□□□□ 0.55
USB1-205ENST00000561743 KNSTRNQ9Y448 316 aa18.51■□□□□ 0.55
USB1-205ENST00000561743 IGSF1Q8N6C5 1336 aa18.5■□□□□ 0.55
USB1-205ENST00000561743 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.5■□□□□ 0.55
USB1-205ENST00000561743 CCNL1Q9UK58 526 aaPredicted RBP18.5■□□□□ 0.55
USB1-205ENST00000561743 NKX1-1Q15270 411 aaPredicted RBP18.49■□□□□ 0.55
USB1-205ENST00000561743 AMER1Q5JTC6 1135 aaPredicted RBP18.49■□□□□ 0.55
USB1-205ENST00000561743 SGIP1Q9BQI5 828 aa18.49■□□□□ 0.55
USB1-205ENST00000561743 PLEKHG2Q9H7P9 1386 aa18.49■□□□□ 0.55
USB1-205ENST00000561743 PALLDQ8WX93 1383 aa18.48■□□□□ 0.55
USB1-205ENST00000561743 MPRIPQ6WCQ1 1025 aa18.48■□□□□ 0.55
USB1-205ENST00000561743 PNPLA7Q6ZV29 1317 aa18.48■□□□□ 0.55
USB1-205ENST00000561743 C4BP0C0L5 1744 aa18.46■□□□□ 0.55
USB1-205ENST00000561743 TFCP2L1Q9NZI6 479 aa18.46■□□□□ 0.55
USB1-205ENST00000561743 PHKG2P15735 406 aa18.45■□□□□ 0.54
USB1-205ENST00000561743 PER1O15534 1290 aaPredicted RBP18.44■□□□□ 0.54
USB1-205ENST00000561743 IFNL2Q8IZJ0 200 aa18.44■□□□□ 0.54
USB1-205ENST00000561743 PIGBQ92521 554 aa18.44■□□□□ 0.54
USB1-205ENST00000561743 UBR3Q6ZT12 1888 aa18.43■□□□□ 0.54
USB1-205ENST00000561743 SLC16A10Q8TF71 515 aa18.43■□□□□ 0.54
USB1-205ENST00000561743 SMARCC1Q92922 1105 aaPredicted RBP18.42■□□□□ 0.54
USB1-205ENST00000561743 FHDC1Q9C0D6 1143 aaPredicted RBP18.42■□□□□ 0.54
USB1-205ENST00000561743 VIRMAQ69YN4 1812 aaKnown RBP18.42■□□□□ 0.54
USB1-205ENST00000561743 AEBP1Q8IUX7 1158 aa18.41■□□□□ 0.54
USB1-205ENST00000561743 ARXQ96QS3 562 aa18.41■□□□□ 0.54
USB1-205ENST00000561743 KDRP35968 1356 aa18.41■□□□□ 0.54
USB1-205ENST00000561743 IL13P35225 146 aa18.4■□□□□ 0.54
USB1-205ENST00000561743 SYT17Q9BSW7 474 aa18.4■□□□□ 0.54
USB1-205ENST00000561743 TMOD3Q9NYL9 352 aa18.4■□□□□ 0.54
USB1-205ENST00000561743 ZNF831Q5JPB2 1677 aa18.4■□□□□ 0.54
USB1-205ENST00000561743 SCN11AQ9UI33 1791 aa18.4■□□□□ 0.54
USB1-205ENST00000561743 MAP3K5Q99683 1374 aa18.39■□□□□ 0.53
USB1-205ENST00000561743 KDM6AO15550 1401 aaPredicted RBP18.39■□□□□ 0.53
USB1-205ENST00000561743 MTHFSP49914 203 aa18.38■□□□□ 0.53
USB1-205ENST00000561743 PLEKHO1Q53GL0 409 aaPredicted RBP18.38■□□□□ 0.53
USB1-205ENST00000561743 CC2D1BQ5T0F9 858 aaKnown RBP18.38■□□□□ 0.53
USB1-205ENST00000561743 COL23A1Q86Y22 540 aaPredicted RBP18.38■□□□□ 0.53
USB1-205ENST00000561743 HMGB2P26583 209 aaKnown RBP18.37■□□□□ 0.53
USB1-205ENST00000561743 AMOTQ4VCS5 1084 aa18.37■□□□□ 0.53
USB1-205ENST00000561743 SULT6B1Q6IMI4 303 aa18.37■□□□□ 0.53
USB1-205ENST00000561743 ASAP1Q9ULH1 1129 aa18.37■□□□□ 0.53
USB1-205ENST00000561743 NPC1L1Q9UHC9 1359 aa18.37■□□□□ 0.53
USB1-205ENST00000561743 COL5A3P25940 1745 aaPredicted RBP18.37■□□□□ 0.53
USB1-205ENST00000561743 LOC102724428A0A0B4J2F2 783 aa18.36■□□□□ 0.53
USB1-205ENST00000561743 SIK1P57059 783 aa18.36■□□□□ 0.53
USB1-205ENST00000561743 ZNF530Q6P9A1 599 aaPredicted RBP18.36■□□□□ 0.53
USB1-205ENST00000561743 DCAF5Q96JK2 942 aa18.36■□□□□ 0.53
USB1-205ENST00000561743 DCAF8L1A6NGE4 600 aa18.35■□□□□ 0.53
USB1-205ENST00000561743 MSH5O43196 834 aa18.35■□□□□ 0.53
USB1-205ENST00000561743 HSP90AB1P08238 724 aaKnown RBP18.35■□□□□ 0.53
USB1-205ENST00000561743 POLD1P28340 1107 aa18.35■□□□□ 0.53
USB1-205ENST00000561743 ATG3Q9NT62 314 aa18.35■□□□□ 0.53
USB1-205ENST00000561743 COL3A1P02461 1466 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms