RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 PPM1GO15355 546 aaPredicted RBP14.21□□□□□ -0.13
CLK3-205ENST00000561673 PANK3Q9H999 370 aa14.21□□□□□ -0.13
CLK3-205ENST00000561673 SMG6Q86US8 1419 aaKnown RBP14.21□□□□□ -0.13
CLK3-205ENST00000561673 MEGF6O75095 1541 aa14.2□□□□□ -0.14
CLK3-205ENST00000561673 KIF20BQ96Q89 1820 aa14.2□□□□□ -0.14
CLK3-205ENST00000561673 MSH5O43196 834 aa14.2□□□□□ -0.14
CLK3-205ENST00000561673 RAPGEF4Q8WZA2 1011 aa14.2□□□□□ -0.14
CLK3-205ENST00000561673 PDGFDQ9GZP0 370 aaPredicted RBP14.2□□□□□ -0.14
CLK3-205ENST00000561673 NHSQ6T4R5 1651 aa14.2□□□□□ -0.14
CLK3-205ENST00000561673 PRIM1P49642 420 aaKnown RBP14.19□□□□□ -0.14
CLK3-205ENST00000561673 SLC15A2Q16348 729 aa14.19□□□□□ -0.14
CLK3-205ENST00000561673 SPON1Q9HCB6 807 aa14.19□□□□□ -0.14
CLK3-205ENST00000561673 STK32BQ9NY57 414 aa14.19□□□□□ -0.14
CLK3-205ENST00000561673 POLKQ9UBT6 870 aa14.19□□□□□ -0.14
CLK3-205ENST00000561673 RGPD2P0DJD1 1756 aa14.19□□□□□ -0.14
CLK3-205ENST00000561673 TATP17735 454 aaPredicted RBP14.18□□□□□ -0.14
CLK3-205ENST00000561673 TNNT2P45379 298 aaPredicted RBP14.18□□□□□ -0.14
CLK3-205ENST00000561673 SYTL4Q96C24 671 aaPredicted RBP14.18□□□□□ -0.14
CLK3-205ENST00000561673 WASHC2AQ641Q2 1341 aa14.17□□□□□ -0.14
CLK3-205ENST00000561673 LRRC4BQ9NT99 713 aa14.17□□□□□ -0.14
CLK3-205ENST00000561673 ZBTB22O15209 634 aa14.16□□□□□ -0.14
CLK3-205ENST00000561673 ZBTB7AO95365 584 aa14.15□□□□□ -0.14
CLK3-205ENST00000561673 NSD2O96028 1365 aa14.14□□□□□ -0.15
CLK3-205ENST00000561673 BTAF1O14981 1849 aa14.14□□□□□ -0.15
CLK3-205ENST00000561673 SLC27A3Q5K4L6 730 aa14.14□□□□□ -0.15
CLK3-205ENST00000561673 EYA1Q99502 592 aa14.14□□□□□ -0.15
CLK3-205ENST00000561673 PPP1R1BQ9UD71 204 aaPredicted RBP14.14□□□□□ -0.15
CLK3-205ENST00000561673 CYP27B1O15528 508 aa14.13□□□□□ -0.15
CLK3-205ENST00000561673 KCNQ4P56696 695 aa14.13□□□□□ -0.15
CLK3-205ENST00000561673 MAPK8IP2Q13387 824 aaPredicted RBP14.13□□□□□ -0.15
CLK3-205ENST00000561673 ZNF827Q17R98 1081 aa14.13□□□□□ -0.15
CLK3-205ENST00000561673 ATF5Q9Y2D1 282 aaPredicted RBP14.13□□□□□ -0.15
CLK3-205ENST00000561673 PCDH11XQ9BZA7 1347 aa14.13□□□□□ -0.15
CLK3-205ENST00000561673 PCDH11YQ9BZA8 1340 aa14.13□□□□□ -0.15
CLK3-205ENST00000561673 SHANK3Q9BYB0 1731 aa14.12□□□□□ -0.15
CLK3-205ENST00000561673 EIF4A2Q14240 407 aaKnown RBP14.12□□□□□ -0.15
CLK3-205ENST00000561673 NCAPD2Q15021 1401 aa14.12□□□□□ -0.15
CLK3-205ENST00000561673 CASZ1Q86V15 1759 aa14.11□□□□□ -0.15
CLK3-205ENST00000561673 PTGER2P43116 358 aa14.11□□□□□ -0.15
CLK3-205ENST00000561673 MORC1Q86VD1 984 aa14.11□□□□□ -0.15
CLK3-205ENST00000561673 AKT1S1Q96B36 256 aa14.11□□□□□ -0.15
CLK3-205ENST00000561673 KNSTRNQ9Y448 316 aa14.11□□□□□ -0.15
CLK3-205ENST00000561673 KAT6BQ8WYB5 2073 aa14.11□□□□□ -0.15
CLK3-205ENST00000561673 KIF7Q2M1P5 1343 aa14.11□□□□□ -0.15
CLK3-205ENST00000561673 MTFR1LQ9H019 292 aa14.1□□□□□ -0.15
CLK3-205ENST00000561673 SPG7Q9UQ90 795 aa14.1□□□□□ -0.15
CLK3-205ENST00000561673 ANKRD26Q9UPS8 1709 aa14.1□□□□□ -0.15
CLK3-205ENST00000561673 PAPPAQ13219 1627 aa14.09□□□□□ -0.15
CLK3-205ENST00000561673 MAP2P11137 1827 aaKnown RBP14.09□□□□□ -0.15
CLK3-205ENST00000561673 NKX1-1Q15270 411 aaPredicted RBP14.09□□□□□ -0.15
CLK3-205ENST00000561673 MPRIPQ6WCQ1 1025 aa14.09□□□□□ -0.15
CLK3-205ENST00000561673 CCNL1Q9UK58 526 aaPredicted RBP14.09□□□□□ -0.15
CLK3-205ENST00000561673 DOT1LQ8TEK3 1739 aa14.09□□□□□ -0.15
CLK3-205ENST00000561673 AMER1Q5JTC6 1135 aaPredicted RBP14.08□□□□□ -0.16
CLK3-205ENST00000561673 POTEDQ86YR6 584 aa14.08□□□□□ -0.16
CLK3-205ENST00000561673 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.08□□□□□ -0.16
CLK3-205ENST00000561673 TFCP2L1Q9NZI6 479 aa14.08□□□□□ -0.16
CLK3-205ENST00000561673 UTRNP46939 3433 aa14.08□□□□□ -0.16
CLK3-205ENST00000561673 SGIP1Q9BQI5 828 aa14.07□□□□□ -0.16
CLK3-205ENST00000561673 PIGBQ92521 554 aa14.06□□□□□ -0.16
CLK3-205ENST00000561673 PER1O15534 1290 aaPredicted RBP14.05□□□□□ -0.16
CLK3-205ENST00000561673 PHKG2P15735 406 aa14.05□□□□□ -0.16
CLK3-205ENST00000561673 IFNL2Q8IZJ0 200 aa14.05□□□□□ -0.16
CLK3-205ENST00000561673 PNPLA7Q6ZV29 1317 aa14.05□□□□□ -0.16
CLK3-205ENST00000561673 IGSF1Q8N6C5 1336 aa14.05□□□□□ -0.16
CLK3-205ENST00000561673 PKD1L3Q7Z443 1732 aa14.04□□□□□ -0.16
CLK3-205ENST00000561673 SLC16A10Q8TF71 515 aa14.03□□□□□ -0.16
CLK3-205ENST00000561673 SMARCC1Q92922 1105 aaPredicted RBP14.03□□□□□ -0.16
CLK3-205ENST00000561673 ARXQ96QS3 562 aa14.03□□□□□ -0.16
CLK3-205ENST00000561673 FHDC1Q9C0D6 1143 aaPredicted RBP14.03□□□□□ -0.16
CLK3-205ENST00000561673 PALLDQ8WX93 1383 aa14.03□□□□□ -0.16
CLK3-205ENST00000561673 LY75O60449 1722 aa14.03□□□□□ -0.16
CLK3-205ENST00000561673 IL13P35225 146 aa14.02□□□□□ -0.17
CLK3-205ENST00000561673 AEBP1Q8IUX7 1158 aa14.02□□□□□ -0.17
CLK3-205ENST00000561673 SYT17Q9BSW7 474 aa14.02□□□□□ -0.17
CLK3-205ENST00000561673 PLEKHO1Q53GL0 409 aaPredicted RBP14.01□□□□□ -0.17
CLK3-205ENST00000561673 CC2D1BQ5T0F9 858 aaKnown RBP14.01□□□□□ -0.17
CLK3-205ENST00000561673 COL23A1Q86Y22 540 aaPredicted RBP14.01□□□□□ -0.17
CLK3-205ENST00000561673 TMOD3Q9NYL9 352 aa14.01□□□□□ -0.17
CLK3-205ENST00000561673 GOLGB1Q14789 3259 aaKnown RBP14.01□□□□□ -0.17
CLK3-205ENST00000561673 TOGARAM1Q9Y4F4 1720 aa14.01□□□□□ -0.17
CLK3-205ENST00000561673 PLEKHG2Q9H7P9 1386 aa14□□□□□ -0.17
CLK3-205ENST00000561673 DCAF8L1A6NGE4 600 aa14□□□□□ -0.17
CLK3-205ENST00000561673 MTHFSP49914 203 aa14□□□□□ -0.17
CLK3-205ENST00000561673 SULT6B1Q6IMI4 303 aa14□□□□□ -0.17
CLK3-205ENST00000561673 ASAP1Q9ULH1 1129 aa14□□□□□ -0.17
CLK3-205ENST00000561673 HMGB2P26583 209 aaKnown RBP13.99□□□□□ -0.17
CLK3-205ENST00000561673 AMOTQ4VCS5 1084 aa13.99□□□□□ -0.17
CLK3-205ENST00000561673 LOC102724428A0A0B4J2F2 783 aa13.98□□□□□ -0.17
CLK3-205ENST00000561673 ERVV-2B6SEH9 535 aa13.98□□□□□ -0.17
CLK3-205ENST00000561673 HSP90AB1P08238 724 aaKnown RBP13.98□□□□□ -0.17
CLK3-205ENST00000561673 POLD1P28340 1107 aa13.98□□□□□ -0.17
CLK3-205ENST00000561673 SIK1P57059 783 aa13.98□□□□□ -0.17
CLK3-205ENST00000561673 ZNF530Q6P9A1 599 aaPredicted RBP13.98□□□□□ -0.17
CLK3-205ENST00000561673 DCAF5Q96JK2 942 aa13.98□□□□□ -0.17
CLK3-205ENST00000561673 ATG3Q9NT62 314 aa13.98□□□□□ -0.17
CLK3-205ENST00000561673 CNGB1Q14028 1251 aaPredicted RBP13.97□□□□□ -0.17
CLK3-205ENST00000561673 AMIGO3Q86WK7 504 aa13.97□□□□□ -0.17
CLK3-205ENST00000561673 QSER1Q2KHR3 1735 aa13.97□□□□□ -0.17
CLK3-205ENST00000561673 ITGB4P16144 1822 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms