RNA–Protein interactions for RNA: ENST00000561348.1

HERC1-212, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-212ENST00000561348 EIF4A2Q14240 407 aaKnown RBP13.71□□□□□ -0.21
HERC1-212ENST00000561348 ZCRB1Q8TBF4 217 aaKnown RBP13.71□□□□□ -0.21
HERC1-212ENST00000561348 DISP2A7MBM2 1401 aa13.71□□□□□ -0.22
HERC1-212ENST00000561348 KIF24Q5T7B8 1368 aa13.71□□□□□ -0.22
HERC1-212ENST00000561348 EZH2Q15910 746 aaKnown RBP13.7□□□□□ -0.22
HERC1-212ENST00000561348 EYA1Q99502 592 aa13.7□□□□□ -0.22
HERC1-212ENST00000561348 TNS2Q63HR2 1409 aa13.7□□□□□ -0.22
HERC1-212ENST00000561348 RGPD1P0DJD0 1748 aa13.7□□□□□ -0.22
HERC1-212ENST00000561348 PTF1AQ7RTS3 328 aa13.69□□□□□ -0.22
HERC1-212ENST00000561348 MEGF6O75095 1541 aa13.69□□□□□ -0.22
HERC1-212ENST00000561348 KCNQ2O43526 872 aa13.68□□□□□ -0.22
HERC1-212ENST00000561348 PSDA5PKW4 1024 aaPredicted RBP13.66□□□□□ -0.22
HERC1-212ENST00000561348 U2SURPO15042 1029 aaKnown RBP13.66□□□□□ -0.22
HERC1-212ENST00000561348 BCL11BQ9C0K0 894 aaPredicted RBP13.66□□□□□ -0.22
HERC1-212ENST00000561348 HMOX1P09601 288 aa13.65□□□□□ -0.22
HERC1-212ENST00000561348 SULT6B1Q6IMI4 303 aa13.65□□□□□ -0.22
HERC1-212ENST00000561348 SPG7Q9UQ90 795 aa13.65□□□□□ -0.22
HERC1-212ENST00000561348 TNS1Q9HBL0 1735 aaKnown RBP13.64□□□□□ -0.23
HERC1-212ENST00000561348 DIAPH1O60610 1272 aaKnown RBP13.64□□□□□ -0.23
HERC1-212ENST00000561348 PRIM1P49642 420 aaKnown RBP13.64□□□□□ -0.23
HERC1-212ENST00000561348 AEBP1Q8IUX7 1158 aa13.64□□□□□ -0.23
HERC1-212ENST00000561348 RNF216Q9NWF9 866 aaPredicted RBP13.64□□□□□ -0.23
HERC1-212ENST00000561348 PCDH11XQ9BZA7 1347 aa13.64□□□□□ -0.23
HERC1-212ENST00000561348 PCDH11YQ9BZA8 1340 aa13.64□□□□□ -0.23
HERC1-212ENST00000561348 SBF2Q86WG5 1849 aa13.63□□□□□ -0.23
HERC1-212ENST00000561348 CFAP53Q96M91 514 aa13.63□□□□□ -0.23
HERC1-212ENST00000561348 CAMKK2Q96RR4 588 aa13.63□□□□□ -0.23
HERC1-212ENST00000561348 IL13P35225 146 aa13.62□□□□□ -0.23
HERC1-212ENST00000561348 PPP2R1AP30153 589 aa13.61□□□□□ -0.23
HERC1-212ENST00000561348 R3HDM1Q15032 1099 aaKnown RBP13.61□□□□□ -0.23
HERC1-212ENST00000561348 PLEKHO1Q53GL0 409 aaPredicted RBP13.61□□□□□ -0.23
HERC1-212ENST00000561348 MPRIPQ6WCQ1 1025 aa13.61□□□□□ -0.23
HERC1-212ENST00000561348 IGSF1Q8N6C5 1336 aa13.61□□□□□ -0.23
HERC1-212ENST00000561348 NPC1L1Q9UHC9 1359 aa13.6□□□□□ -0.23
HERC1-212ENST00000561348 CYP27B1O15528 508 aa13.6□□□□□ -0.23
HERC1-212ENST00000561348 NBPF14Q5TI25 921 aa13.6□□□□□ -0.23
HERC1-212ENST00000561348 ZNF530Q6P9A1 599 aaPredicted RBP13.6□□□□□ -0.23
HERC1-212ENST00000561348 C1orf141Q5JVX7 400 aa13.59□□□□□ -0.23
HERC1-212ENST00000561348 IFNL2Q8IZJ0 200 aa13.59□□□□□ -0.23
HERC1-212ENST00000561348 PLSCR1O15162 318 aa13.58□□□□□ -0.24
HERC1-212ENST00000561348 KCNQ4P56696 695 aa13.58□□□□□ -0.24
HERC1-212ENST00000561348 TXNRD1Q16881 649 aa13.58□□□□□ -0.24
HERC1-212ENST00000561348 DOT1LQ8TEK3 1739 aa13.58□□□□□ -0.24
HERC1-212ENST00000561348 SHANK3Q9BYB0 1731 aa13.58□□□□□ -0.24
HERC1-212ENST00000561348 PHKG2P15735 406 aa13.57□□□□□ -0.24
HERC1-212ENST00000561348 NUDCQ9Y266 331 aa13.57□□□□□ -0.24
HERC1-212ENST00000561348 NHSQ6T4R5 1651 aa13.56□□□□□ -0.24
HERC1-212ENST00000561348 BTAF1O14981 1849 aa13.56□□□□□ -0.24
HERC1-212ENST00000561348 ZNF316A6NFI3 1004 aaPredicted RBP13.56□□□□□ -0.24
HERC1-212ENST00000561348 U2AF1L5P0DN76 240 aaPredicted RBP13.56□□□□□ -0.24
HERC1-212ENST00000561348 U2AF1Q01081 240 aaKnown RBP eCLIP13.56□□□□□ -0.243e-7■□□□□ 8.8
HERC1-212ENST00000561348 AMOTQ4VCS5 1084 aa13.56□□□□□ -0.24
HERC1-212ENST00000561348 PARD3Q8TEW0 1356 aa13.56□□□□□ -0.24
HERC1-212ENST00000561348 BCL9O00512 1426 aa13.56□□□□□ -0.24
HERC1-212ENST00000561348 HOXD11P31277 338 aaPredicted RBP13.55□□□□□ -0.24
HERC1-212ENST00000561348 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.55□□□□□ -0.24
HERC1-212ENST00000561348 TMOD3Q9NYL9 352 aa13.55□□□□□ -0.24
HERC1-212ENST00000561348 PROM2Q8N271 834 aa13.54□□□□□ -0.24
HERC1-212ENST00000561348 STK32BQ9NY57 414 aa13.54□□□□□ -0.24
HERC1-212ENST00000561348 NCAPD2Q15021 1401 aa13.54□□□□□ -0.24
HERC1-212ENST00000561348 PKD1L3Q7Z443 1732 aa13.53□□□□□ -0.24
HERC1-212ENST00000561348 CABP4P57796 275 aa13.53□□□□□ -0.24
HERC1-212ENST00000561348 CCNL1Q9UK58 526 aaPredicted RBP13.53□□□□□ -0.24
HERC1-212ENST00000561348 HSP90AB1P08238 724 aaKnown RBP13.52□□□□□ -0.25
HERC1-212ENST00000561348 RALBP1Q15311 655 aa13.52□□□□□ -0.25
HERC1-212ENST00000561348 PIGBQ92521 554 aa13.52□□□□□ -0.25
HERC1-212ENST00000561348 NUP188Q5SRE5 1749 aa13.52□□□□□ -0.25
HERC1-212ENST00000561348 PRKAR2BP31323 418 aa13.51□□□□□ -0.25
HERC1-212ENST00000561348 MTHFSDQ2M296 383 aaKnown RBP13.51□□□□□ -0.25
HERC1-212ENST00000561348 ANO8Q9HCE9 1232 aaPredicted RBP13.51□□□□□ -0.25
HERC1-212ENST00000561348 RREB1Q92766 1687 aa13.5□□□□□ -0.25
HERC1-212ENST00000561348 COL3A1P02461 1466 aaPredicted RBP13.5□□□□□ -0.25
HERC1-212ENST00000561348 NEFMP07197 916 aa13.5□□□□□ -0.25
HERC1-212ENST00000561348 NKX1-1Q15270 411 aaPredicted RBP13.5□□□□□ -0.25
HERC1-212ENST00000561348 DCAF5Q96JK2 942 aa13.5□□□□□ -0.25
HERC1-212ENST00000561348 RBM42Q9BTD8 480 aaKnown RBP13.5□□□□□ -0.25
HERC1-212ENST00000561348 LRRC4BQ9NT99 713 aa13.5□□□□□ -0.25
HERC1-212ENST00000561348 KDRP35968 1356 aa13.49□□□□□ -0.25
HERC1-212ENST00000561348 PALLDQ8WX93 1383 aa13.49□□□□□ -0.25
HERC1-212ENST00000561348 ITGB4P16144 1822 aa13.49□□□□□ -0.25
HERC1-212ENST00000561348 AKAP4Q5JQC9 854 aa13.49□□□□□ -0.25
HERC1-212ENST00000561348 SMARCC1Q92922 1105 aaPredicted RBP13.49□□□□□ -0.25
HERC1-212ENST00000561348 ASAP1Q9ULH1 1129 aa13.49□□□□□ -0.25
HERC1-212ENST00000561348 TOGARAM1Q9Y4F4 1720 aa13.48□□□□□ -0.25
HERC1-212ENST00000561348 SLC15A2Q16348 729 aa13.48□□□□□ -0.25
HERC1-212ENST00000561348 SLC27A3Q5K4L6 730 aa13.48□□□□□ -0.25
HERC1-212ENST00000561348 NFATC2IPQ8NCF5 419 aa13.48□□□□□ -0.25
HERC1-212ENST00000561348 LGR6Q9HBX8 967 aa13.48□□□□□ -0.25
HERC1-212ENST00000561348 TFCP2L1Q9NZI6 479 aa13.48□□□□□ -0.25
HERC1-212ENST00000561348 MYBBP1AQ9BQG0 1328 aaKnown RBP13.47□□□□□ -0.25
HERC1-212ENST00000561348 ERVV-2B6SEH9 535 aa13.47□□□□□ -0.25
HERC1-212ENST00000561348 PTCD1O75127 700 aaKnown RBP13.47□□□□□ -0.25
HERC1-212ENST00000561348 ZBTB7AO95365 584 aa13.47□□□□□ -0.25
HERC1-212ENST00000561348 PHACTR3Q96KR7 559 aa13.47□□□□□ -0.25
HERC1-212ENST00000561348 PDGFDQ9GZP0 370 aaPredicted RBP13.47□□□□□ -0.25
HERC1-212ENST00000561348 RGPD3A6NKT7 1758 aaPredicted RBP13.46□□□□□ -0.25
HERC1-212ENST00000561348 RGPD4Q7Z3J3 1758 aa13.46□□□□□ -0.25
HERC1-212ENST00000561348 ATP6V1AP38606 617 aa13.46□□□□□ -0.25
HERC1-212ENST00000561348 ZNF827Q17R98 1081 aa13.46□□□□□ -0.25
HERC1-212ENST00000561348 GAS2L2Q8NHY3 880 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms