RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 ANKRD26Q9UPS8 1709 aa13.57□□□□□ -0.24
HERC1-209ENST00000560519 HMGB2P26583 209 aaKnown RBP13.57□□□□□ -0.24
HERC1-209ENST00000560519 DDX54Q8TDD1 881 aaKnown RBP13.56□□□□□ -0.24
HERC1-209ENST00000560519 AKT1S1Q96B36 256 aa13.56□□□□□ -0.24
HERC1-209ENST00000560519 SYTL4Q96C24 671 aaPredicted RBP13.56□□□□□ -0.24
HERC1-209ENST00000560519 LRRC4BQ9NT99 713 aa13.56□□□□□ -0.24
HERC1-209ENST00000560519 CGNL1Q0VF96 1302 aa13.56□□□□□ -0.24
HERC1-209ENST00000560519 NSD2O96028 1365 aa13.56□□□□□ -0.24
HERC1-209ENST00000560519 TFCP2L1Q9NZI6 479 aa13.55□□□□□ -0.24
HERC1-209ENST00000560519 MAP3K19Q56UN5 1328 aa13.55□□□□□ -0.24
HERC1-209ENST00000560519 PNPLA7Q6ZV29 1317 aa13.55□□□□□ -0.24
HERC1-209ENST00000560519 USP47Q96K76 1375 aa13.55□□□□□ -0.24
HERC1-209ENST00000560519 ITGB4P16144 1822 aa13.55□□□□□ -0.24
HERC1-209ENST00000560519 TOGARAM1Q9Y4F4 1720 aa13.54□□□□□ -0.24
HERC1-209ENST00000560519 HOXC9P31274 260 aa13.54□□□□□ -0.24
HERC1-209ENST00000560519 AMPHP49418 695 aa13.54□□□□□ -0.24
HERC1-209ENST00000560519 GPR162Q16538 588 aa13.54□□□□□ -0.24
HERC1-209ENST00000560519 KLHL34Q8N239 644 aa13.54□□□□□ -0.24
HERC1-209ENST00000560519 LTV1Q96GA3 475 aaPredicted RBP13.54□□□□□ -0.24
HERC1-209ENST00000560519 KIF24Q5T7B8 1368 aa13.53□□□□□ -0.24
HERC1-209ENST00000560519 C4BP0C0L5 1744 aa13.53□□□□□ -0.24
HERC1-209ENST00000560519 SENP3-EIF4A1A0A087X0R7 540 aa13.52□□□□□ -0.25
HERC1-209ENST00000560519 ZCRB1Q8TBF4 217 aaKnown RBP13.52□□□□□ -0.25
HERC1-209ENST00000560519 NSD3Q9BZ95 1437 aa13.51□□□□□ -0.25
HERC1-209ENST00000560519 PCDH11XQ9BZA7 1347 aa13.51□□□□□ -0.25
HERC1-209ENST00000560519 PCDH11YQ9BZA8 1340 aa13.51□□□□□ -0.25
HERC1-209ENST00000560519 PRIM1P49642 420 aaKnown RBP13.51□□□□□ -0.25
HERC1-209ENST00000560519 C1QTNF8P60827 252 aa13.51□□□□□ -0.25
HERC1-209ENST00000560519 RAPGEF4Q8WZA2 1011 aa13.51□□□□□ -0.25
HERC1-209ENST00000560519 CCNL1Q9UK58 526 aaPredicted RBP13.51□□□□□ -0.25
HERC1-209ENST00000560519 UBR3Q6ZT12 1888 aa13.5□□□□□ -0.25
HERC1-209ENST00000560519 FLT4P35916 1363 aa13.5□□□□□ -0.25
HERC1-209ENST00000560519 GIGYF1O75420 1035 aaPredicted RBP13.5□□□□□ -0.25
HERC1-209ENST00000560519 PELP1Q8IZL8 1130 aaKnown RBP13.49□□□□□ -0.25
HERC1-209ENST00000560519 TESK2Q96S53 571 aa13.49□□□□□ -0.25
HERC1-209ENST00000560519 INSRP06213 1382 aa13.48□□□□□ -0.25
HERC1-209ENST00000560519 ST20-MTHFSA0A0A6YYL1 179 aa13.48□□□□□ -0.25
HERC1-209ENST00000560519 GRIN3BO60391 1043 aa13.48□□□□□ -0.25
HERC1-209ENST00000560519 TMF1P82094 1093 aa13.48□□□□□ -0.25
HERC1-209ENST00000560519 MSH5O43196 834 aa13.47□□□□□ -0.25
HERC1-209ENST00000560519 TATP17735 454 aaPredicted RBP13.47□□□□□ -0.25
HERC1-209ENST00000560519 CDCA8Q53HL2 280 aa13.47□□□□□ -0.25
HERC1-209ENST00000560519 FLAD1Q8NFF5 587 aa13.47□□□□□ -0.25
HERC1-209ENST00000560519 PALLDQ8WX93 1383 aa13.46□□□□□ -0.25
HERC1-209ENST00000560519 GOLGB1Q14789 3259 aaKnown RBP13.46□□□□□ -0.25
HERC1-209ENST00000560519 ZNF831Q5JPB2 1677 aa13.46□□□□□ -0.26
HERC1-209ENST00000560519 MAP2P11137 1827 aaKnown RBP13.46□□□□□ -0.26
HERC1-209ENST00000560519 RRS1Q15050 365 aaKnown RBP13.45□□□□□ -0.26
HERC1-209ENST00000560519 NLGN2Q8NFZ4 835 aa13.45□□□□□ -0.26
HERC1-209ENST00000560519 NCAPD2Q15021 1401 aa13.45□□□□□ -0.26
HERC1-209ENST00000560519 KCNQ4P56696 695 aa13.44□□□□□ -0.26
HERC1-209ENST00000560519 NBPF6Q5VWK0 638 aa13.44□□□□□ -0.26
HERC1-209ENST00000560519 NBPF4Q96M43 638 aa13.44□□□□□ -0.26
HERC1-209ENST00000560519 CICQ96RK0 1608 aaPredicted RBP13.43□□□□□ -0.26
HERC1-209ENST00000560519 FYB1O15117 783 aa13.43□□□□□ -0.26
HERC1-209ENST00000560519 COL23A1Q86Y22 540 aaPredicted RBP13.43□□□□□ -0.26
HERC1-209ENST00000560519 GGNBP2Q9H3C7 697 aa13.43□□□□□ -0.26
HERC1-209ENST00000560519 CD2APQ9Y5K6 639 aa13.43□□□□□ -0.26
HERC1-209ENST00000560519 KIF13BQ9NQT8 1826 aa13.43□□□□□ -0.26
HERC1-209ENST00000560519 PLEKHG2Q9H7P9 1386 aa13.43□□□□□ -0.26
HERC1-209ENST00000560519 USHBP1Q8N6Y0 703 aa13.42□□□□□ -0.26
HERC1-209ENST00000560519 SMARCC1Q92922 1105 aaPredicted RBP13.42□□□□□ -0.26
HERC1-209ENST00000560519 AK7Q96M32 723 aa13.42□□□□□ -0.26
HERC1-209ENST00000560519 COL5A3P25940 1745 aaPredicted RBP13.42□□□□□ -0.26
HERC1-209ENST00000560519 ATP10DQ9P241 1426 aa13.4□□□□□ -0.26
HERC1-209ENST00000560519 FBLN1P23142 703 aa13.4□□□□□ -0.26
HERC1-209ENST00000560519 MSL1Q68DK7 614 aa13.4□□□□□ -0.26
HERC1-209ENST00000560519 YBX3P16989 372 aaKnown RBP eCLIP13.39□□□□□ -0.27
HERC1-209ENST00000560519 HSP90AB2PQ58FF8 381 aa13.39□□□□□ -0.27
HERC1-209ENST00000560519 MPRIPQ6WCQ1 1025 aa13.39□□□□□ -0.27
HERC1-209ENST00000560519 SPG7Q9UQ90 795 aa13.39□□□□□ -0.27
HERC1-209ENST00000560519 ADCY9O60503 1353 aa13.39□□□□□ -0.27
HERC1-209ENST00000560519 SSFA2P28290 1259 aa13.38□□□□□ -0.27
HERC1-209ENST00000560519 C4AP0C0L4 1744 aa13.38□□□□□ -0.27
HERC1-209ENST00000560519 KIAA1551Q9HCM1 1747 aa13.38□□□□□ -0.27
HERC1-209ENST00000560519 BRCA1P38398 1863 aaKnown RBP13.36□□□□□ -0.27
HERC1-209ENST00000560519 CYP27B1O15528 508 aa13.36□□□□□ -0.27
HERC1-209ENST00000560519 GPBP1L1Q9HC44 474 aaPredicted RBP13.36□□□□□ -0.27
HERC1-209ENST00000560519 PHF14O94880 888 aa13.35□□□□□ -0.27
HERC1-209ENST00000560519 NKX1-1Q15270 411 aaPredicted RBP13.35□□□□□ -0.27
HERC1-209ENST00000560519 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.35□□□□□ -0.278e-6■■■□□ 14.7
HERC1-209ENST00000560519 TMOD3Q9NYL9 352 aa13.35□□□□□ -0.27
HERC1-209ENST00000560519 IGSF1Q8N6C5 1336 aa13.35□□□□□ -0.27
HERC1-209ENST00000560519 N4BP2Q86UW6 1770 aaPredicted RBP13.35□□□□□ -0.27
HERC1-209ENST00000560519 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.34□□□□□ -0.27
HERC1-209ENST00000560519 EMILIN1Q9Y6C2 1016 aa13.34□□□□□ -0.27
HERC1-209ENST00000560519 LOC102724428A0A0B4J2F2 783 aa13.33□□□□□ -0.28
HERC1-209ENST00000560519 SIK1P57059 783 aa13.33□□□□□ -0.28
HERC1-209ENST00000560519 ARFGEF1Q9Y6D6 1849 aa13.33□□□□□ -0.28
HERC1-209ENST00000560519 WASHC2AQ641Q2 1341 aa13.33□□□□□ -0.28
HERC1-209ENST00000560519 PPM1GO15355 546 aaPredicted RBP13.32□□□□□ -0.28
HERC1-209ENST00000560519 IFNL2Q8IZJ0 200 aa13.32□□□□□ -0.28
HERC1-209ENST00000560519 PIGBQ92521 554 aa13.32□□□□□ -0.28
HERC1-209ENST00000560519 KDRP35968 1356 aa13.32□□□□□ -0.28
HERC1-209ENST00000560519 PXDNLA1KZ92 1463 aa13.3□□□□□ -0.28
HERC1-209ENST00000560519 VIRMAQ69YN4 1812 aaKnown RBP13.3□□□□□ -0.28
HERC1-209ENST00000560519 GNPATO15228 680 aa13.3□□□□□ -0.28
HERC1-209ENST00000560519 PHKG2P15735 406 aa13.3□□□□□ -0.28
HERC1-209ENST00000560519 TJP1Q07157 1748 aa13.3□□□□□ -0.28
HERC1-209ENST00000560519 SCN11AQ9UI33 1791 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms