RNA–Protein interactions for RNA: ENST00000560463.5

TRAF3-209, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-209ENST00000560463 MTHFSDQ2M296 383 aaKnown RBP11.22□□□□□ -0.61
TRAF3-209ENST00000560463 PLEKHO1Q53GL0 409 aaPredicted RBP11.22□□□□□ -0.61
TRAF3-209ENST00000560463 USHBP1Q8N6Y0 703 aa11.22□□□□□ -0.61
TRAF3-209ENST00000560463 NLRP2Q9NX02 1062 aa11.22□□□□□ -0.61
TRAF3-209ENST00000560463 ITGB4P16144 1822 aa11.21□□□□□ -0.61
TRAF3-209ENST00000560463 CRB1P82279 1406 aa11.21□□□□□ -0.61
TRAF3-209ENST00000560463 GNAI1P63096 354 aa11.21□□□□□ -0.61
TRAF3-209ENST00000560463 RAPGEF4Q8WZA2 1011 aa11.21□□□□□ -0.61
TRAF3-209ENST00000560463 RTF1Q92541 710 aaKnown RBP11.21□□□□□ -0.61
TRAF3-209ENST00000560463 SPINK5Q9NQ38 1064 aaPredicted RBP11.21□□□□□ -0.61
TRAF3-209ENST00000560463 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.21□□□□□ -0.61
TRAF3-209ENST00000560463 OVOS2A0A0G2JMS6 1433 aa11.2□□□□□ -0.62
TRAF3-209ENST00000560463 MAP3K5Q99683 1374 aa11.2□□□□□ -0.62
TRAF3-209ENST00000560463 GNAT3A8MTJ3 354 aa11.2□□□□□ -0.62
TRAF3-209ENST00000560463 CT47B1P0C2W7 299 aaPredicted RBP11.2□□□□□ -0.62
TRAF3-209ENST00000560463 TATP17735 454 aaPredicted RBP11.2□□□□□ -0.62
TRAF3-209ENST00000560463 EVA1CP58658 441 aa11.2□□□□□ -0.62
TRAF3-209ENST00000560463 IFT57Q9NWB7 429 aa11.2□□□□□ -0.62
TRAF3-209ENST00000560463 SPATA31A6Q5VVP1 1343 aa11.19□□□□□ -0.62
TRAF3-209ENST00000560463 TOM1L2Q6ZVM7 507 aa11.19□□□□□ -0.62
TRAF3-209ENST00000560463 CARD10Q9BWT7 1032 aa11.19□□□□□ -0.62
TRAF3-209ENST00000560463 BTG4Q9NY30 223 aa11.19□□□□□ -0.62
TRAF3-209ENST00000560463 RCAN3Q9UKA8 241 aa11.19□□□□□ -0.62
TRAF3-209ENST00000560463 SUPT16HQ9Y5B9 1047 aaKnown RBP11.19□□□□□ -0.62
TRAF3-209ENST00000560463 MEGF6O75095 1541 aa11.19□□□□□ -0.62
TRAF3-209ENST00000560463 RNF123Q5XPI4 1314 aa11.18□□□□□ -0.62
TRAF3-209ENST00000560463 NEFLP07196 543 aa11.18□□□□□ -0.62
TRAF3-209ENST00000560463 ZNF853P0CG23 659 aa11.18□□□□□ -0.62
TRAF3-209ENST00000560463 AKAP4Q5JQC9 854 aa11.18□□□□□ -0.62
TRAF3-209ENST00000560463 CFAP44Q96MT7 982 aa11.18□□□□□ -0.62
TRAF3-209ENST00000560463 SPG7Q9UQ90 795 aa11.18□□□□□ -0.62
TRAF3-209ENST00000560463 SLIT2O94813 1529 aa11.18□□□□□ -0.62
TRAF3-209ENST00000560463 FANCIQ9NVI1 1328 aa11.17□□□□□ -0.62
TRAF3-209ENST00000560463 C1orf141Q5JVX7 400 aa11.17□□□□□ -0.62
TRAF3-209ENST00000560463 BABAM1Q9NWV8 329 aa11.17□□□□□ -0.62
TRAF3-209ENST00000560463 CEMIPQ8WUJ3 1361 aa11.16□□□□□ -0.62
TRAF3-209ENST00000560463 ZNF530Q6P9A1 599 aaPredicted RBP11.16□□□□□ -0.62
TRAF3-209ENST00000560463 STRN4Q9NRL3 753 aa11.16□□□□□ -0.62
TRAF3-209ENST00000560463 GTF3C3Q9Y5Q9 886 aa11.16□□□□□ -0.62
TRAF3-209ENST00000560463 IL2RBP14784 551 aa11.15□□□□□ -0.62
TRAF3-209ENST00000560463 DCTN1Q14203 1278 aa11.15□□□□□ -0.62
TRAF3-209ENST00000560463 LARP1Q6PKG0 1096 aaKnown RBP11.15□□□□□ -0.62
TRAF3-209ENST00000560463 MCM10Q7L590 875 aa11.15□□□□□ -0.62
TRAF3-209ENST00000560463 ZNF428Q96B54 188 aa11.15□□□□□ -0.62
TRAF3-209ENST00000560463 UBR2Q8IWV8 1755 aa11.15□□□□□ -0.62
TRAF3-209ENST00000560463 NUTM2BA6NNL0 878 aaPredicted RBP11.14□□□□□ -0.63
TRAF3-209ENST00000560463 NUTM2EB1AL46 878 aaPredicted RBP11.14□□□□□ -0.63
TRAF3-209ENST00000560463 CHL1O00533 1208 aa11.14□□□□□ -0.63
TRAF3-209ENST00000560463 ADAMTS2O95450 1211 aa11.14□□□□□ -0.63
TRAF3-209ENST00000560463 ERICH6BQ5W0A0 696 aa11.14□□□□□ -0.63
TRAF3-209ENST00000560463 NUTM2AQ8IVF1 878 aaPredicted RBP11.14□□□□□ -0.63
TRAF3-209ENST00000560463 IFNL2Q8IZJ0 200 aa11.14□□□□□ -0.63
TRAF3-209ENST00000560463 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.14□□□□□ -0.63
TRAF3-209ENST00000560463 TSR2Q969E8 191 aaKnown RBP11.14□□□□□ -0.63
TRAF3-209ENST00000560463 THRAP3Q9Y2W1 955 aaKnown RBP11.14□□□□□ -0.63
TRAF3-209ENST00000560463 LAS1LQ9Y4W2 734 aaKnown RBP11.14□□□□□ -0.63
TRAF3-209ENST00000560463 TOGARAM1Q9Y4F4 1720 aa11.14□□□□□ -0.63
TRAF3-209ENST00000560463 LRP6O75581 1613 aa11.13□□□□□ -0.63
TRAF3-209ENST00000560463 HSP90AB1P08238 724 aaKnown RBP11.13□□□□□ -0.63
TRAF3-209ENST00000560463 HSPA1LP34931 641 aa11.13□□□□□ -0.63
TRAF3-209ENST00000560463 EXOSC9Q06265 439 aaKnown RBP11.13□□□□□ -0.63
TRAF3-209ENST00000560463 TAF7Q15545 349 aaPredicted RBP11.13□□□□□ -0.63
TRAF3-209ENST00000560463 IL17REQ8NFR9 667 aa11.13□□□□□ -0.63
TRAF3-209ENST00000560463 THUMPD2Q9BTF0 503 aaKnown RBP11.13□□□□□ -0.63
TRAF3-209ENST00000560463 CDCA7Q9BWT1 371 aaPredicted RBP11.13□□□□□ -0.63
TRAF3-209ENST00000560463 MBIPQ9NS73 344 aa11.13□□□□□ -0.63
TRAF3-209ENST00000560463 LAMB4A4D0S4 1761 aa11.13□□□□□ -0.63
TRAF3-209ENST00000560463 PAPPAQ13219 1627 aa11.13□□□□□ -0.63
TRAF3-209ENST00000560463 MRC1P22897 1456 aa11.12□□□□□ -0.63
TRAF3-209ENST00000560463 PCDH11XQ9BZA7 1347 aa11.12□□□□□ -0.63
TRAF3-209ENST00000560463 PCDH11YQ9BZA8 1340 aa11.12□□□□□ -0.63
TRAF3-209ENST00000560463 DISP2A7MBM2 1401 aa11.12□□□□□ -0.63
TRAF3-209ENST00000560463 PHKG2P15735 406 aa11.12□□□□□ -0.63
TRAF3-209ENST00000560463 RRP1P56182 461 aaKnown RBP11.12□□□□□ -0.63
TRAF3-209ENST00000560463 ZCRB1Q8TBF4 217 aaKnown RBP11.12□□□□□ -0.63
TRAF3-209ENST00000560463 N4BP2Q86UW6 1770 aaPredicted RBP11.12□□□□□ -0.63
TRAF3-209ENST00000560463 DOT1LQ8TEK3 1739 aa11.12□□□□□ -0.63
TRAF3-209ENST00000560463 SOS1Q07889 1333 aaPredicted RBP11.11□□□□□ -0.63
TRAF3-209ENST00000560463 RNMTO43148 476 aaKnown RBP11.11□□□□□ -0.63
TRAF3-209ENST00000560463 TEFQ10587 303 aa11.11□□□□□ -0.63
TRAF3-209ENST00000560463 ALDH1L2Q3SY69 923 aa11.11□□□□□ -0.63
TRAF3-209ENST00000560463 FNBP4Q8N3X1 1017 aaPredicted RBP11.11□□□□□ -0.63
TRAF3-209ENST00000560463 NGLY1Q96IV0 654 aa11.11□□□□□ -0.63
TRAF3-209ENST00000560463 DCAF5Q96JK2 942 aa11.11□□□□□ -0.63
TRAF3-209ENST00000560463 SBF2Q86WG5 1849 aa11.11□□□□□ -0.63
TRAF3-209ENST00000560463 SPATA31A1Q5TZJ5 1347 aa11.1□□□□□ -0.63
TRAF3-209ENST00000560463 RARSP54136 660 aaKnown RBP11.1□□□□□ -0.63
TRAF3-209ENST00000560463 MPRIPQ6WCQ1 1025 aa11.1□□□□□ -0.63
TRAF3-209ENST00000560463 UNC5CLQ8IV45 518 aa11.1□□□□□ -0.63
TRAF3-209ENST00000560463 LGR6Q9HBX8 967 aa11.1□□□□□ -0.63
TRAF3-209ENST00000560463 TSPYL4Q9UJ04 414 aa11.1□□□□□ -0.63
TRAF3-209ENST00000560463 BCL9LQ86UU0 1499 aa11.1□□□□□ -0.63
TRAF3-209ENST00000560463 C5P01031 1676 aa11.1□□□□□ -0.63
TRAF3-209ENST00000560463 SPATA31A5Q5VU36 1347 aa11.09□□□□□ -0.63
TRAF3-209ENST00000560463 SPATA31A7Q8IWB4 1347 aa11.09□□□□□ -0.63
TRAF3-209ENST00000560463 KDM6AO15550 1401 aaPredicted RBP11.09□□□□□ -0.63
TRAF3-209ENST00000560463 CYP27B1O15528 508 aa11.09□□□□□ -0.63
TRAF3-209ENST00000560463 FKBP8Q14318 412 aa11.09□□□□□ -0.63
TRAF3-209ENST00000560463 NKX1-1Q15270 411 aaPredicted RBP11.09□□□□□ -0.63
TRAF3-209ENST00000560463 C8orf37Q96NL8 207 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms