RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 PTF1AQ7RTS3 328 aa19.36■□□□□ 0.69
TPM1-223ENST00000560445 RGPD2P0DJD1 1756 aa19.36■□□□□ 0.69
TPM1-223ENST00000560445 MEGF6O75095 1541 aa19.35■□□□□ 0.69
TPM1-223ENST00000560445 DCAF8L1A6NGE4 600 aa19.35■□□□□ 0.69
TPM1-223ENST00000560445 NBPF6Q5VWK0 638 aa19.35■□□□□ 0.69
TPM1-223ENST00000560445 NBPF4Q96M43 638 aa19.35■□□□□ 0.69
TPM1-223ENST00000560445 FBLN1P23142 703 aa19.34■□□□□ 0.69
TPM1-223ENST00000560445 SLC15A2Q16348 729 aa19.34■□□□□ 0.69
TPM1-223ENST00000560445 HSP90AB2PQ58FF8 381 aa19.34■□□□□ 0.69
TPM1-223ENST00000560445 PROM2Q8N271 834 aa19.34■□□□□ 0.69
TPM1-223ENST00000560445 PLEKHG2Q9H7P9 1386 aa19.33■□□□□ 0.69
TPM1-223ENST00000560445 WASHC2AQ641Q2 1341 aa19.33■□□□□ 0.69
TPM1-223ENST00000560445 PPM1GO15355 546 aaPredicted RBP19.33■□□□□ 0.68
TPM1-223ENST00000560445 SYTL4Q96C24 671 aaPredicted RBP19.33■□□□□ 0.68
TPM1-223ENST00000560445 ANO8Q9HCE9 1232 aaPredicted RBP19.33■□□□□ 0.68
TPM1-223ENST00000560445 DOT1LQ8TEK3 1739 aa19.33■□□□□ 0.68
TPM1-223ENST00000560445 CASZ1Q86V15 1759 aa19.32■□□□□ 0.68
TPM1-223ENST00000560445 MAP2P11137 1827 aaKnown RBP19.31■□□□□ 0.68
TPM1-223ENST00000560445 EMILIN1Q9Y6C2 1016 aa19.31■□□□□ 0.68
TPM1-223ENST00000560445 SHANK3Q9BYB0 1731 aa19.31■□□□□ 0.68
TPM1-223ENST00000560445 PRIM1P49642 420 aaKnown RBP19.29■□□□□ 0.68
TPM1-223ENST00000560445 USHBP1Q8N6Y0 703 aa19.29■□□□□ 0.68
TPM1-223ENST00000560445 MTFR1LQ9H019 292 aa19.29■□□□□ 0.68
TPM1-223ENST00000560445 SPG7Q9UQ90 795 aa19.29■□□□□ 0.68
TPM1-223ENST00000560445 PAPPAQ13219 1627 aa19.29■□□□□ 0.68
TPM1-223ENST00000560445 NCAPD2Q15021 1401 aa19.28■□□□□ 0.68
TPM1-223ENST00000560445 PANK3Q9H999 370 aa19.28■□□□□ 0.68
TPM1-223ENST00000560445 KNSTRNQ9Y448 316 aa19.28■□□□□ 0.68
TPM1-223ENST00000560445 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.27■□□□□ 0.685e-8■■■■□ 19.9
TPM1-223ENST00000560445 PKD1L3Q7Z443 1732 aa19.27■□□□□ 0.68
TPM1-223ENST00000560445 POLKQ9UBT6 870 aa19.26■□□□□ 0.67
TPM1-223ENST00000560445 QSER1Q2KHR3 1735 aa19.25■□□□□ 0.67
TPM1-223ENST00000560445 SLC16A10Q8TF71 515 aa19.25■□□□□ 0.67
TPM1-223ENST00000560445 LY75O60449 1722 aa19.25■□□□□ 0.67
TPM1-223ENST00000560445 ZBTB7AO95365 584 aa19.23■□□□□ 0.67
TPM1-223ENST00000560445 MORC1Q86VD1 984 aa19.23■□□□□ 0.67
TPM1-223ENST00000560445 SMARCC1Q92922 1105 aaPredicted RBP19.23■□□□□ 0.67
TPM1-223ENST00000560445 CCNL1Q9UK58 526 aaPredicted RBP19.23■□□□□ 0.67
TPM1-223ENST00000560445 TNNT2P45379 298 aaPredicted RBP19.22■□□□□ 0.67
TPM1-223ENST00000560445 EYA1Q99502 592 aa19.21■□□□□ 0.67
TPM1-223ENST00000560445 TFCP2L1Q9NZI6 479 aa19.21■□□□□ 0.67
TPM1-223ENST00000560445 AKT1S1Q96B36 256 aa19.2■□□□□ 0.66
TPM1-223ENST00000560445 LRRC4BQ9NT99 713 aa19.2■□□□□ 0.66
TPM1-223ENST00000560445 HSP90AB1P08238 724 aaKnown RBP19.19■□□□□ 0.66
TPM1-223ENST00000560445 POLD1P28340 1107 aa19.19■□□□□ 0.66
TPM1-223ENST00000560445 EIF4A2Q14240 407 aaKnown RBP19.19■□□□□ 0.66
TPM1-223ENST00000560445 NKX1-1Q15270 411 aaPredicted RBP19.19■□□□□ 0.66
TPM1-223ENST00000560445 IFNL2Q8IZJ0 200 aa19.19■□□□□ 0.66
TPM1-223ENST00000560445 ATF5Q9Y2D1 282 aaPredicted RBP19.19■□□□□ 0.66
TPM1-223ENST00000560445 CYP27B1O15528 508 aa19.18■□□□□ 0.66
TPM1-223ENST00000560445 ZNF827Q17R98 1081 aa19.18■□□□□ 0.66
TPM1-223ENST00000560445 FLAD1Q8NFF5 587 aa19.18■□□□□ 0.66
TPM1-223ENST00000560445 PALLDQ8WX93 1383 aa19.18■□□□□ 0.66
TPM1-223ENST00000560445 PTGER2P43116 358 aa19.17■□□□□ 0.66
TPM1-223ENST00000560445 MPRIPQ6WCQ1 1025 aa19.17■□□□□ 0.66
TPM1-223ENST00000560445 IGSF1Q8N6C5 1336 aa19.17■□□□□ 0.66
TPM1-223ENST00000560445 AMOTQ4VCS5 1084 aa19.16■□□□□ 0.66
TPM1-223ENST00000560445 TMOD3Q9NYL9 352 aa19.16■□□□□ 0.66
TPM1-223ENST00000560445 KIF7Q2M1P5 1343 aa19.16■□□□□ 0.66
TPM1-223ENST00000560445 ARXQ96QS3 562 aa19.15■□□□□ 0.66
TPM1-223ENST00000560445 PDGFDQ9GZP0 370 aaPredicted RBP19.15■□□□□ 0.66
TPM1-223ENST00000560445 ITGB4P16144 1822 aa19.15■□□□□ 0.66
TPM1-223ENST00000560445 MAP3K5Q99683 1374 aa19.15■□□□□ 0.66
TPM1-223ENST00000560445 C5P01031 1676 aa19.14■□□□□ 0.66
TPM1-223ENST00000560445 PLEKHO1Q53GL0 409 aaPredicted RBP19.14■□□□□ 0.65
TPM1-223ENST00000560445 PHKG2P15735 406 aa19.13■□□□□ 0.65
TPM1-223ENST00000560445 PNPLA7Q6ZV29 1317 aa19.13■□□□□ 0.65
TPM1-223ENST00000560445 TOGARAM1Q9Y4F4 1720 aa19.13■□□□□ 0.65
TPM1-223ENST00000560445 SGIP1Q9BQI5 828 aa19.12■□□□□ 0.65
TPM1-223ENST00000560445 TUBGCP6Q96RT7 1819 aa19.1■□□□□ 0.65
TPM1-223ENST00000560445 MSH5O43196 834 aa19.1■□□□□ 0.65
TPM1-223ENST00000560445 AMER1Q5JTC6 1135 aaPredicted RBP19.1■□□□□ 0.65
TPM1-223ENST00000560445 C1orf141Q5JVX7 400 aa19.1■□□□□ 0.65
TPM1-223ENST00000560445 DCAF5Q96JK2 942 aa19.1■□□□□ 0.65
TPM1-223ENST00000560445 AK7Q96M32 723 aa19.1■□□□□ 0.65
TPM1-223ENST00000560445 FHDC1Q9C0D6 1143 aaPredicted RBP19.1■□□□□ 0.65
TPM1-223ENST00000560445 NPC1L1Q9UHC9 1359 aa19.09■□□□□ 0.65
TPM1-223ENST00000560445 ERVV-2B6SEH9 535 aa19.09■□□□□ 0.65
TPM1-223ENST00000560445 PIGBQ92521 554 aa19.09■□□□□ 0.65
TPM1-223ENST00000560445 SYT17Q9BSW7 474 aa19.09■□□□□ 0.65
TPM1-223ENST00000560445 TAF1LQ8IZX4 1826 aa19.09■□□□□ 0.65
TPM1-223ENST00000560445 COL24A1Q17RW2 1714 aa19.08■□□□□ 0.65
TPM1-223ENST00000560445 KCNQ4P56696 695 aa19.07■□□□□ 0.64
TPM1-223ENST00000560445 ZNF530Q6P9A1 599 aaPredicted RBP19.07■□□□□ 0.64
TPM1-223ENST00000560445 KDRP35968 1356 aa19.06■□□□□ 0.64
TPM1-223ENST00000560445 C4BP0C0L5 1744 aa19.06■□□□□ 0.64
TPM1-223ENST00000560445 LOC102724428A0A0B4J2F2 783 aa19.06■□□□□ 0.64
TPM1-223ENST00000560445 SIK1P57059 783 aa19.06■□□□□ 0.64
TPM1-223ENST00000560445 YY1P25490 414 aa19.05■□□□□ 0.64
TPM1-223ENST00000560445 SULT6B1Q6IMI4 303 aa19.04■□□□□ 0.64
TPM1-223ENST00000560445 SSFA2P28290 1259 aa19.03■□□□□ 0.64
TPM1-223ENST00000560445 IL13P35225 146 aa19.03■□□□□ 0.64
TPM1-223ENST00000560445 MTHFSP49914 203 aa19.03■□□□□ 0.64
TPM1-223ENST00000560445 CABP4P57796 275 aa19.03■□□□□ 0.64
TPM1-223ENST00000560445 COL23A1Q86Y22 540 aaPredicted RBP19.03■□□□□ 0.64
TPM1-223ENST00000560445 ZNF831Q5JPB2 1677 aa19.03■□□□□ 0.64
TPM1-223ENST00000560445 PER1O15534 1290 aaPredicted RBP19.01■□□□□ 0.63
TPM1-223ENST00000560445 DIAPH1O60610 1272 aaKnown RBP19.01■□□□□ 0.63
TPM1-223ENST00000560445 ATP6V1AP38606 617 aa19.01■□□□□ 0.63
TPM1-223ENST00000560445 CC2D1BQ5T0F9 858 aaKnown RBP19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms