RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 FLT4P35916 1363 aa18.89■□□□□ 0.61
SMAD3-214ENST00000560402 PTGER2P43116 358 aa18.88■□□□□ 0.61
SMAD3-214ENST00000560402 DDX54Q8TDD1 881 aaKnown RBP18.88■□□□□ 0.61
SMAD3-214ENST00000560402 PDGFDQ9GZP0 370 aaPredicted RBP18.88■□□□□ 0.61
SMAD3-214ENST00000560402 GGNBP2Q9H3C7 697 aa18.88■□□□□ 0.61
SMAD3-214ENST00000560402 INSRP06213 1382 aa18.88■□□□□ 0.61
SMAD3-214ENST00000560402 COL24A1Q17RW2 1714 aa18.88■□□□□ 0.61
SMAD3-214ENST00000560402 ZCRB1Q8TBF4 217 aaKnown RBP18.87■□□□□ 0.61
SMAD3-214ENST00000560402 PKD1L3Q7Z443 1732 aa18.86■□□□□ 0.61
SMAD3-214ENST00000560402 NSD3Q9BZ95 1437 aa18.86■□□□□ 0.61
SMAD3-214ENST00000560402 RRS1Q15050 365 aaKnown RBP18.86■□□□□ 0.61
SMAD3-214ENST00000560402 NSD2O96028 1365 aa18.85■□□□□ 0.61
SMAD3-214ENST00000560402 MAP3K5Q99683 1374 aa18.84■□□□□ 0.61
SMAD3-214ENST00000560402 FBLN1P23142 703 aa18.84■□□□□ 0.61
SMAD3-214ENST00000560402 YY1P25490 414 aa18.84■□□□□ 0.61
SMAD3-214ENST00000560402 RAPGEF4Q8WZA2 1011 aa18.84■□□□□ 0.61
SMAD3-214ENST00000560402 ATF5Q9Y2D1 282 aaPredicted RBP18.84■□□□□ 0.61
SMAD3-214ENST00000560402 ZNF827Q17R98 1081 aa18.83■□□□□ 0.6
SMAD3-214ENST00000560402 NBPF6Q5VWK0 638 aa18.83■□□□□ 0.6
SMAD3-214ENST00000560402 NBPF4Q96M43 638 aa18.83■□□□□ 0.6
SMAD3-214ENST00000560402 SGIP1Q9BQI5 828 aa18.83■□□□□ 0.6
SMAD3-214ENST00000560402 LRRC4BQ9NT99 713 aa18.83■□□□□ 0.6
SMAD3-214ENST00000560402 SLC16A10Q8TF71 515 aa18.82■□□□□ 0.6
SMAD3-214ENST00000560402 SYTL4Q96C24 671 aaPredicted RBP18.82■□□□□ 0.6
SMAD3-214ENST00000560402 NCAPD2Q15021 1401 aa18.82■□□□□ 0.6
SMAD3-214ENST00000560402 PCDH11XQ9BZA7 1347 aa18.81■□□□□ 0.6
SMAD3-214ENST00000560402 PCDH11YQ9BZA8 1340 aa18.81■□□□□ 0.6
SMAD3-214ENST00000560402 TATP17735 454 aaPredicted RBP18.81■□□□□ 0.6
SMAD3-214ENST00000560402 PRIM1P49642 420 aaKnown RBP18.81■□□□□ 0.6
SMAD3-214ENST00000560402 AKT1S1Q96B36 256 aa18.81■□□□□ 0.6
SMAD3-214ENST00000560402 C5P01031 1676 aa18.81■□□□□ 0.6
SMAD3-214ENST00000560402 MAP2P11137 1827 aaKnown RBP18.81■□□□□ 0.6
SMAD3-214ENST00000560402 CHD4Q14839 1912 aa18.8■□□□□ 0.6
SMAD3-214ENST00000560402 FHDC1Q9C0D6 1143 aaPredicted RBP18.79■□□□□ 0.6
SMAD3-214ENST00000560402 TOGARAM1Q9Y4F4 1720 aa18.79■□□□□ 0.6
SMAD3-214ENST00000560402 ITGB4P16144 1822 aa18.79■□□□□ 0.6
SMAD3-214ENST00000560402 TAF1LQ8IZX4 1826 aa18.79■□□□□ 0.6
SMAD3-214ENST00000560402 HMGB2P26583 209 aaKnown RBP18.78■□□□□ 0.6
SMAD3-214ENST00000560402 HSP90AB2PQ58FF8 381 aa18.78■□□□□ 0.6
SMAD3-214ENST00000560402 USHBP1Q8N6Y0 703 aa18.78■□□□□ 0.6
SMAD3-214ENST00000560402 ARXQ96QS3 562 aa18.78■□□□□ 0.6
SMAD3-214ENST00000560402 SYT17Q9BSW7 474 aa18.78■□□□□ 0.6
SMAD3-214ENST00000560402 CARD14Q9BXL6 1004 aa18.77■□□□□ 0.6
SMAD3-214ENST00000560402 PNPLA7Q6ZV29 1317 aa18.76■□□□□ 0.59
SMAD3-214ENST00000560402 PLEKHG2Q9H7P9 1386 aa18.76■□□□□ 0.59
SMAD3-214ENST00000560402 CCNL1Q9UK58 526 aaPredicted RBP18.75■□□□□ 0.59
SMAD3-214ENST00000560402 EMILIN1Q9Y6C2 1016 aa18.75■□□□□ 0.59
SMAD3-214ENST00000560402 POLD1P28340 1107 aa18.74■□□□□ 0.59
SMAD3-214ENST00000560402 TFCP2L1Q9NZI6 479 aa18.74■□□□□ 0.59
SMAD3-214ENST00000560402 WASHC2AQ641Q2 1341 aa18.73■□□□□ 0.59
SMAD3-214ENST00000560402 PALLDQ8WX93 1383 aa18.71■□□□□ 0.59
SMAD3-214ENST00000560402 C4BP0C0L5 1744 aa18.71■□□□□ 0.59
SMAD3-214ENST00000560402 CYP27B1O15528 508 aa18.7■□□□□ 0.58
SMAD3-214ENST00000560402 KCNQ4P56696 695 aa18.69■□□□□ 0.58
SMAD3-214ENST00000560402 SMARCC1Q92922 1105 aaPredicted RBP18.69■□□□□ 0.58
SMAD3-214ENST00000560402 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.69■□□□□ 0.583e-7■□□□□ 8.4
SMAD3-214ENST00000560402 SPG7Q9UQ90 795 aa18.69■□□□□ 0.58
SMAD3-214ENST00000560402 PPM1GO15355 546 aaPredicted RBP18.68■□□□□ 0.58
SMAD3-214ENST00000560402 EIF4G2P78344 907 aaKnown RBP eCLIP18.68■□□□□ 0.58
SMAD3-214ENST00000560402 UBR3Q6ZT12 1888 aa18.68■□□□□ 0.58
SMAD3-214ENST00000560402 UTRNP46939 3433 aa18.67■□□□□ 0.58
SMAD3-214ENST00000560402 NKX1-1Q15270 411 aaPredicted RBP18.67■□□□□ 0.58
SMAD3-214ENST00000560402 FLAD1Q8NFF5 587 aa18.67■□□□□ 0.58
SMAD3-214ENST00000560402 POLKQ9UBT6 870 aa18.66■□□□□ 0.58
SMAD3-214ENST00000560402 MPRIPQ6WCQ1 1025 aa18.65■□□□□ 0.58
SMAD3-214ENST00000560402 EYA1Q99502 592 aa18.65■□□□□ 0.58
SMAD3-214ENST00000560402 POLR3GLQ9BT43 218 aa18.64■□□□□ 0.57
SMAD3-214ENST00000560402 ZNF831Q5JPB2 1677 aa18.63■□□□□ 0.57
SMAD3-214ENST00000560402 HSPA5P11021 654 aaKnown RBP18.63■□□□□ 0.57
SMAD3-214ENST00000560402 COL23A1Q86Y22 540 aaPredicted RBP18.63■□□□□ 0.57
SMAD3-214ENST00000560402 MSH5O43196 834 aa18.62■□□□□ 0.57
SMAD3-214ENST00000560402 KLHL34Q8N239 644 aa18.62■□□□□ 0.57
SMAD3-214ENST00000560402 IGSF1Q8N6C5 1336 aa18.62■□□□□ 0.57
SMAD3-214ENST00000560402 EIF4A2Q14240 407 aaKnown RBP18.61■□□□□ 0.57
SMAD3-214ENST00000560402 IFNL2Q8IZJ0 200 aa18.61■□□□□ 0.57
SMAD3-214ENST00000560402 AK7Q96M32 723 aa18.61■□□□□ 0.57
SMAD3-214ENST00000560402 PHKG2P15735 406 aa18.6■□□□□ 0.57
SMAD3-214ENST00000560402 GPR162Q16538 588 aa18.6■□□□□ 0.57
SMAD3-214ENST00000560402 ZNF784Q8NCA9 323 aaPredicted RBP18.6■□□□□ 0.57
SMAD3-214ENST00000560402 PIGBQ92521 554 aa18.6■□□□□ 0.57
SMAD3-214ENST00000560402 TMOD3Q9NYL9 352 aa18.6■□□□□ 0.57
SMAD3-214ENST00000560402 PANK3Q9H999 370 aa18.58■□□□□ 0.56
SMAD3-214ENST00000560402 LOC102724428A0A0B4J2F2 783 aa18.57■□□□□ 0.56
SMAD3-214ENST00000560402 SSFA2P28290 1259 aa18.57■□□□□ 0.56
SMAD3-214ENST00000560402 TNNT2P45379 298 aaPredicted RBP18.57■□□□□ 0.56
SMAD3-214ENST00000560402 SIK1P57059 783 aa18.57■□□□□ 0.56
SMAD3-214ENST00000560402 COL5A3P25940 1745 aaPredicted RBP18.57■□□□□ 0.56
SMAD3-214ENST00000560402 HSP90AB1P08238 724 aaKnown RBP18.56■□□□□ 0.56
SMAD3-214ENST00000560402 MSL1Q68DK7 614 aa18.56■□□□□ 0.56
SMAD3-214ENST00000560402 NLGN2Q8NFZ4 835 aa18.56■□□□□ 0.56
SMAD3-214ENST00000560402 GOLGB1Q14789 3259 aaKnown RBP18.55■□□□□ 0.56
SMAD3-214ENST00000560402 KDRP35968 1356 aa18.55■□□□□ 0.56
SMAD3-214ENST00000560402 CICQ96RK0 1608 aaPredicted RBP18.54■□□□□ 0.56
SMAD3-214ENST00000560402 GRIN3BO60391 1043 aa18.54■□□□□ 0.56
SMAD3-214ENST00000560402 PELP1Q8IZL8 1130 aaKnown RBP18.54■□□□□ 0.56
SMAD3-214ENST00000560402 CD2APQ9Y5K6 639 aa18.54■□□□□ 0.56
SMAD3-214ENST00000560402 MORC1Q86VD1 984 aa18.53■□□□□ 0.56
SMAD3-214ENST00000560402 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.52■□□□□ 0.56
SMAD3-214ENST00000560402 ERVV-2B6SEH9 535 aa18.52■□□□□ 0.56
SMAD3-214ENST00000560402 AMOTQ4VCS5 1084 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms