RNA–Protein interactions for RNA: ENST00000560005.6

PSEN1-225, Transcript of presenilin 1, humanhuman

TSL 3

Gene PSEN1, Length 699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-225ENST00000560005 PRIM1P49642 420 aaKnown RBP28.82■■■□□ 2.2
PSEN1-225ENST00000560005 IFFO2Q5TF58 517 aa28.82■■■□□ 2.2
PSEN1-225ENST00000560005 HDGFL2Q7Z4V5 671 aaPredicted RBP28.82■■■□□ 2.2
PSEN1-225ENST00000560005 EDC4Q6P2E9 1401 aaKnown RBP28.8■■■□□ 2.2
PSEN1-225ENST00000560005 ANKRD36BQ8N2N9 1353 aa28.8■■■□□ 2.2
PSEN1-225ENST00000560005 IP6K1Q92551 441 aa28.8■■■□□ 2.2
PSEN1-225ENST00000560005 SLC12A5Q9H2X9 1139 aa28.8■■■□□ 2.2
PSEN1-225ENST00000560005 DOT1LQ8TEK3 1739 aa28.8■■■□□ 2.2
PSEN1-225ENST00000560005 YBX3P16989 372 aaKnown RBP eCLIP28.79■■■□□ 2.2
PSEN1-225ENST00000560005 NSD2O96028 1365 aa28.78■■■□□ 2.2
PSEN1-225ENST00000560005 LY75O60449 1722 aa28.78■■■□□ 2.2
PSEN1-225ENST00000560005 FAM208AQ9UK61 1670 aaKnown RBP28.78■■■□□ 2.2
PSEN1-225ENST00000560005 TONSLQ96HA7 1378 aa28.77■■■□□ 2.2
PSEN1-225ENST00000560005 GRIN3BO60391 1043 aa28.77■■■□□ 2.2
PSEN1-225ENST00000560005 MSH5O43196 834 aa28.76■■■□□ 2.19
PSEN1-225ENST00000560005 A0A1W2PP64 1363 aa28.75■■■□□ 2.19
PSEN1-225ENST00000560005 CCNL1Q9UK58 526 aaPredicted RBP28.75■■■□□ 2.19
PSEN1-225ENST00000560005 TERF2IPQ9NYB0 399 aa28.73■■■□□ 2.19
PSEN1-225ENST00000560005 COL23A1Q86Y22 540 aaPredicted RBP28.72■■■□□ 2.19
PSEN1-225ENST00000560005 MSL1Q68DK7 614 aa28.7■■■□□ 2.18
PSEN1-225ENST00000560005 ZCRB1Q8TBF4 217 aaKnown RBP28.7■■■□□ 2.18
PSEN1-225ENST00000560005 ATP10DQ9P241 1426 aa28.69■■■□□ 2.18
PSEN1-225ENST00000560005 MEGF6O75095 1541 aa28.69■■■□□ 2.18
PSEN1-225ENST00000560005 CARD11Q9BXL7 1154 aa28.69■■■□□ 2.18
PSEN1-225ENST00000560005 MAP3K19Q56UN5 1328 aa28.69■■■□□ 2.18
PSEN1-225ENST00000560005 USP47Q96K76 1375 aa28.68■■■□□ 2.18
PSEN1-225ENST00000560005 HOXC9P31274 260 aa28.68■■■□□ 2.18
PSEN1-225ENST00000560005 RGPD2P0DJD1 1756 aa28.67■■■□□ 2.18
PSEN1-225ENST00000560005 AMPHP49418 695 aa28.66■■■□□ 2.18
PSEN1-225ENST00000560005 FBLN1P23142 703 aa28.65■■■□□ 2.18
PSEN1-225ENST00000560005 COG3Q96JB2 828 aa28.64■■■□□ 2.18
PSEN1-225ENST00000560005 GPBP1L1Q9HC44 474 aaPredicted RBP28.62■■■□□ 2.17
PSEN1-225ENST00000560005 CD2APQ9Y5K6 639 aa28.61■■■□□ 2.17
PSEN1-225ENST00000560005 C5P01031 1676 aa28.61■■■□□ 2.17
PSEN1-225ENST00000560005 PUS7Q96PZ0 661 aaKnown RBP28.59■■■□□ 2.17
PSEN1-225ENST00000560005 NBPF6Q5VWK0 638 aa28.58■■■□□ 2.17
PSEN1-225ENST00000560005 USHBP1Q8N6Y0 703 aa28.58■■■□□ 2.17
PSEN1-225ENST00000560005 ZNF526Q8TF50 670 aaPredicted RBP28.58■■■□□ 2.17
PSEN1-225ENST00000560005 NBPF4Q96M43 638 aa28.58■■■□□ 2.17
PSEN1-225ENST00000560005 ADCY9O60503 1353 aa28.57■■■□□ 2.16
PSEN1-225ENST00000560005 RTL1A6NKG5 1358 aa28.55■■■□□ 2.16
PSEN1-225ENST00000560005 CGNL1Q0VF96 1302 aa28.55■■■□□ 2.16
PSEN1-225ENST00000560005 FLAD1Q8NFF5 587 aa28.55■■■□□ 2.16
PSEN1-225ENST00000560005 RAPGEF4Q8WZA2 1011 aa28.55■■■□□ 2.16
PSEN1-225ENST00000560005 HSPA6P17066 643 aa28.54■■■□□ 2.16
PSEN1-225ENST00000560005 RRS1Q15050 365 aaKnown RBP28.54■■■□□ 2.16
PSEN1-225ENST00000560005 PALLDQ8WX93 1383 aa28.53■■■□□ 2.16
PSEN1-225ENST00000560005 TAF1LQ8IZX4 1826 aa28.52■■■□□ 2.16
PSEN1-225ENST00000560005 WWC3Q9ULE0 1092 aa28.51■■■□□ 2.15
PSEN1-225ENST00000560005 TATP17735 454 aaPredicted RBP28.5■■■□□ 2.15
PSEN1-225ENST00000560005 MPRIPQ6WCQ1 1025 aa28.5■■■□□ 2.15
PSEN1-225ENST00000560005 SMG6Q86US8 1419 aaKnown RBP28.5■■■□□ 2.15
PSEN1-225ENST00000560005 HMGB2P26583 209 aaKnown RBP28.49■■■□□ 2.15
PSEN1-225ENST00000560005 PCDH11XQ9BZA7 1347 aa28.48■■■□□ 2.15
PSEN1-225ENST00000560005 PCDH11YQ9BZA8 1340 aa28.48■■■□□ 2.15
PSEN1-225ENST00000560005 AMIGO3Q86WK7 504 aa28.48■■■□□ 2.15
PSEN1-225ENST00000560005 C4BP0C0L5 1744 aa28.48■■■□□ 2.15
PSEN1-225ENST00000560005 IGSF1Q8N6C5 1336 aa28.47■■■□□ 2.15
PSEN1-225ENST00000560005 AK7Q96M32 723 aa28.47■■■□□ 2.15
PSEN1-225ENST00000560005 TESK2Q96S53 571 aa28.47■■■□□ 2.15
PSEN1-225ENST00000560005 TOGARAM1Q9Y4F4 1720 aa28.46■■■□□ 2.15
PSEN1-225ENST00000560005 ZNF316A6NFI3 1004 aaPredicted RBP28.45■■■□□ 2.14
PSEN1-225ENST00000560005 PHF14O94880 888 aa28.45■■■□□ 2.14
PSEN1-225ENST00000560005 SMIM5Q71RC9 77 aa28.45■■■□□ 2.14
PSEN1-225ENST00000560005 GGNBP2Q9H3C7 697 aa28.45■■■□□ 2.14
PSEN1-225ENST00000560005 ST20-MTHFSA0A0A6YYL1 179 aa28.43■■■□□ 2.14
PSEN1-225ENST00000560005 CYP27B1O15528 508 aa28.43■■■□□ 2.14
PSEN1-225ENST00000560005 HSP90AB2PQ58FF8 381 aa28.43■■■□□ 2.14
PSEN1-225ENST00000560005 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.42■■■□□ 2.14
PSEN1-225ENST00000560005 FYB1O15117 783 aa28.42■■■□□ 2.14
PSEN1-225ENST00000560005 SMARCC1Q92922 1105 aaPredicted RBP28.42■■■□□ 2.14
PSEN1-225ENST00000560005 UBR3Q6ZT12 1888 aa28.42■■■□□ 2.14
PSEN1-225ENST00000560005 INSRP06213 1382 aa28.4■■■□□ 2.14
PSEN1-225ENST00000560005 ITGB4P16144 1822 aa28.4■■■□□ 2.14
PSEN1-225ENST00000560005 KIF3CO14782 793 aa28.39■■■□□ 2.14
PSEN1-225ENST00000560005 NSD3Q9BZ95 1437 aa28.38■■■□□ 2.13
PSEN1-225ENST00000560005 PIGBQ92521 554 aa28.37■■■□□ 2.13
PSEN1-225ENST00000560005 FLT4P35916 1363 aa28.37■■■□□ 2.13
PSEN1-225ENST00000560005 SSFA2P28290 1259 aa28.36■■■□□ 2.13
PSEN1-225ENST00000560005 LINC00116Q8NCU8 138 aa28.34■■■□□ 2.13
PSEN1-225ENST00000560005 PKD1L3Q7Z443 1732 aa28.33■■■□□ 2.13
PSEN1-225ENST00000560005 SLC24A1O60721 1099 aa28.33■■■□□ 2.13
PSEN1-225ENST00000560005 MAP2P11137 1827 aaKnown RBP28.32■■■□□ 2.12
PSEN1-225ENST00000560005 LOC102724428A0A0B4J2F2 783 aa28.32■■■□□ 2.12
PSEN1-225ENST00000560005 SIK1P57059 783 aa28.32■■■□□ 2.12
PSEN1-225ENST00000560005 CICQ96RK0 1608 aaPredicted RBP28.32■■■□□ 2.12
PSEN1-225ENST00000560005 KIF24Q5T7B8 1368 aa28.31■■■□□ 2.12
PSEN1-225ENST00000560005 KIF20BQ96Q89 1820 aa28.29■■■□□ 2.12
PSEN1-225ENST00000560005 GNPATO15228 680 aa28.29■■■□□ 2.12
PSEN1-225ENST00000560005 NKX1-1Q15270 411 aaPredicted RBP28.29■■■□□ 2.12
PSEN1-225ENST00000560005 MMP10P09238 476 aa28.27■■■□□ 2.12
PSEN1-225ENST00000560005 APLP1P51693 650 aa28.27■■■□□ 2.12
PSEN1-225ENST00000560005 ITPK1Q13572 414 aa28.27■■■□□ 2.12
PSEN1-225ENST00000560005 PXDNLA1KZ92 1463 aa28.27■■■□□ 2.12
PSEN1-225ENST00000560005 TMOD3Q9NYL9 352 aa28.26■■■□□ 2.11
PSEN1-225ENST00000560005 ASAP1Q9ULH1 1129 aa28.26■■■□□ 2.11
PSEN1-225ENST00000560005 SPG7Q9UQ90 795 aa28.26■■■□□ 2.11
PSEN1-225ENST00000560005 EMILIN1Q9Y6C2 1016 aa28.26■■■□□ 2.11
PSEN1-225ENST00000560005 TMF1P82094 1093 aa28.25■■■□□ 2.11
PSEN1-225ENST00000560005 NCAPD2Q15021 1401 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms