RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PLEKHF1Q96S99 279 aa23.09■■□□□ 1.29
SNX1-208ENST00000559844 TOM1L2Q6ZVM7 507 aa23.09■■□□□ 1.29
SNX1-208ENST00000559844 NLRP2Q9NX02 1062 aa23.09■■□□□ 1.29
SNX1-208ENST00000559844 CRB1P82279 1406 aa23.07■■□□□ 1.28
SNX1-208ENST00000559844 NBPF6Q5VWK0 638 aa23.07■■□□□ 1.28
SNX1-208ENST00000559844 NBPF4Q96M43 638 aa23.07■■□□□ 1.28
SNX1-208ENST00000559844 EYA1Q99502 592 aa23.07■■□□□ 1.28
SNX1-208ENST00000559844 FCHSD2O94868 740 aa23.05■■□□□ 1.28
SNX1-208ENST00000559844 USHBP1Q8N6Y0 703 aa23.05■■□□□ 1.28
SNX1-208ENST00000559844 CRBNQ96SW2 442 aa23.05■■□□□ 1.28
SNX1-208ENST00000559844 USP35Q9P2H5 1018 aa23.05■■□□□ 1.28
SNX1-208ENST00000559844 IGSF1Q8N6C5 1336 aa23.04■■□□□ 1.28
SNX1-208ENST00000559844 MYH16Q9H6N6 1097 aa23.04■■□□□ 1.28
SNX1-208ENST00000559844 CCDC9Q9Y3X0 531 aaKnown RBP23.04■■□□□ 1.28
SNX1-208ENST00000559844 TMPOP42166 694 aaKnown RBP23.03■■□□□ 1.28
SNX1-208ENST00000559844 VPS72Q15906 364 aa23.02■■□□□ 1.28
SNX1-208ENST00000559844 CARD10Q9BWT7 1032 aa23.02■■□□□ 1.28
SNX1-208ENST00000559844 NEFMP07197 916 aa23.01■■□□□ 1.27
SNX1-208ENST00000559844 HMOX1P09601 288 aa23.01■■□□□ 1.27
SNX1-208ENST00000559844 SPATA31A5Q5VU36 1347 aa23.01■■□□□ 1.27
SNX1-208ENST00000559844 SPATA31A7Q8IWB4 1347 aa23.01■■□□□ 1.27
SNX1-208ENST00000559844 ZNF772Q68DY9 489 aaPredicted RBP23.01■■□□□ 1.27
SNX1-208ENST00000559844 SULT6B1Q6IMI4 303 aa23.01■■□□□ 1.27
SNX1-208ENST00000559844 AEBP1Q8IUX7 1158 aa23.01■■□□□ 1.27
SNX1-208ENST00000559844 TRPC5Q9UL62 973 aaPredicted RBP23.01■■□□□ 1.27
SNX1-208ENST00000559844 SPATA31A1Q5TZJ5 1347 aa23■■□□□ 1.27
SNX1-208ENST00000559844 WNK3Q9BYP7 1800 aa23■■□□□ 1.27
SNX1-208ENST00000559844 ATRNO75882 1429 aa23■■□□□ 1.27
SNX1-208ENST00000559844 NCAPD2Q15021 1401 aa23■■□□□ 1.27
SNX1-208ENST00000559844 RBM19Q9Y4C8 960 aaKnown RBP23■■□□□ 1.27
SNX1-208ENST00000559844 IL16Q14005 1332 aa22.98■■□□□ 1.27
SNX1-208ENST00000559844 QTRT2Q9H974 415 aaKnown RBP22.98■■□□□ 1.27
SNX1-208ENST00000559844 C20orf194Q5TEA3 1177 aa22.98■■□□□ 1.27
SNX1-208ENST00000559844 RSPH6AQ9H0K4 717 aa22.98■■□□□ 1.27
SNX1-208ENST00000559844 KDRP35968 1356 aa22.98■■□□□ 1.27
SNX1-208ENST00000559844 GLI3P10071 1580 aa22.97■■□□□ 1.27
SNX1-208ENST00000559844 BCAR3O75815 825 aa22.96■■□□□ 1.27
SNX1-208ENST00000559844 CT47B1P0C2W7 299 aaPredicted RBP22.96■■□□□ 1.27
SNX1-208ENST00000559844 GJD4Q96KN9 370 aaPredicted RBP22.96■■□□□ 1.27
SNX1-208ENST00000559844 RGS17Q9UGC6 210 aaPredicted RBP22.96■■□□□ 1.27
SNX1-208ENST00000559844 TRIM35Q9UPQ4 493 aa22.96■■□□□ 1.27
SNX1-208ENST00000559844 PARP4Q9UKK3 1724 aaKnown RBP22.95■■□□□ 1.26
SNX1-208ENST00000559844 RIPK4P57078 832 aa22.95■■□□□ 1.26
SNX1-208ENST00000559844 PRKAR2BP31323 418 aa22.94■■□□□ 1.26
SNX1-208ENST00000559844 MEGF6O75095 1541 aa22.94■■□□□ 1.26
SNX1-208ENST00000559844 RAPGEF4Q8WZA2 1011 aa22.94■■□□□ 1.26
SNX1-208ENST00000559844 THRAP3Q9Y2W1 955 aaKnown RBP22.94■■□□□ 1.26
SNX1-208ENST00000559844 PDE3AQ14432 1141 aa22.93■■□□□ 1.26
SNX1-208ENST00000559844 IL2RBP14784 551 aa22.92■■□□□ 1.26
SNX1-208ENST00000559844 RARSP54136 660 aaKnown RBP22.92■■□□□ 1.26
SNX1-208ENST00000559844 FAM98CQ17RN3 349 aaKnown RBP22.91■■□□□ 1.26
SNX1-208ENST00000559844 BARGINQ6ZT62 677 aa22.9■■□□□ 1.26
SNX1-208ENST00000559844 DISP2A7MBM2 1401 aa22.9■■□□□ 1.26
SNX1-208ENST00000559844 TATP17735 454 aaPredicted RBP22.9■■□□□ 1.26
SNX1-208ENST00000559844 CANXP27824 592 aaKnown RBP22.9■■□□□ 1.26
SNX1-208ENST00000559844 FANCIQ9NVI1 1328 aa22.9■■□□□ 1.26
SNX1-208ENST00000559844 NFE2L2Q16236 605 aa22.89■■□□□ 1.26
SNX1-208ENST00000559844 PKD1L3Q7Z443 1732 aa22.88■■□□□ 1.25
SNX1-208ENST00000559844 OVOS2A0A0G2JMS6 1433 aa22.88■■□□□ 1.25
SNX1-208ENST00000559844 POTEAQ6S8J7 498 aa22.88■■□□□ 1.25
SNX1-208ENST00000559844 THSD7AQ9UPZ6 1657 aa22.87■■□□□ 1.25
SNX1-208ENST00000559844 A0A0G2JS52 829 aa22.87■■□□□ 1.25
SNX1-208ENST00000559844 RBM6P78332 1123 aaKnown RBP22.87■■□□□ 1.25
SNX1-208ENST00000559844 MYT1Q01538 1121 aa22.87■■□□□ 1.25
SNX1-208ENST00000559844 CALD1Q05682 793 aaKnown RBP22.87■■□□□ 1.25
SNX1-208ENST00000559844 CDCA7Q9BWT1 371 aaPredicted RBP22.87■■□□□ 1.25
SNX1-208ENST00000559844 LRRC37A3O60309 1634 aa22.87■■□□□ 1.25
SNX1-208ENST00000559844 PHACTR3Q96KR7 559 aa22.87■■□□□ 1.25
SNX1-208ENST00000559844 SHANK3Q9BYB0 1731 aa22.86■■□□□ 1.25
SNX1-208ENST00000559844 RXRBP28702 533 aa22.85■■□□□ 1.25
SNX1-208ENST00000559844 LMOD3Q0VAK6 560 aa22.85■■□□□ 1.25
SNX1-208ENST00000559844 TCERG1O14776 1098 aaKnown RBP22.83■■□□□ 1.25
SNX1-208ENST00000559844 CENPQQ7L2Z9 268 aaPredicted RBP22.83■■□□□ 1.25
SNX1-208ENST00000559844 DLG5Q8TDM6 1919 aa22.83■■□□□ 1.25
SNX1-208ENST00000559844 AAMPQ13685 434 aa22.83■■□□□ 1.24
SNX1-208ENST00000559844 PLEKHO1Q53GL0 409 aaPredicted RBP22.83■■□□□ 1.24
SNX1-208ENST00000559844 TSR2Q969E8 191 aaKnown RBP22.83■■□□□ 1.24
SNX1-208ENST00000559844 PLEKHG2Q9H7P9 1386 aa22.83■■□□□ 1.24
SNX1-208ENST00000559844 EXOSC9Q06265 439 aaKnown RBP22.82■■□□□ 1.24
SNX1-208ENST00000559844 AMOTQ4VCS5 1084 aa22.82■■□□□ 1.24
SNX1-208ENST00000559844 TNS2Q63HR2 1409 aa22.82■■□□□ 1.24
SNX1-208ENST00000559844 ONECUT3O60422 494 aaPredicted RBP22.81■■□□□ 1.24
SNX1-208ENST00000559844 DDB1Q16531 1140 aa22.81■■□□□ 1.24
SNX1-208ENST00000559844 ZCRB1Q8TBF4 217 aaKnown RBP22.81■■□□□ 1.24
SNX1-208ENST00000559844 FRAT1Q92837 279 aaPredicted RBP22.81■■□□□ 1.24
SNX1-208ENST00000559844 SPG7Q9UQ90 795 aa22.81■■□□□ 1.24
SNX1-208ENST00000559844 BRWD3Q6RI45 1802 aa22.81■■□□□ 1.24
SNX1-208ENST00000559844 KDM2BQ8NHM5 1336 aa22.81■■□□□ 1.24
SNX1-208ENST00000559844 MTHFSDQ2M296 383 aaKnown RBP22.81■■□□□ 1.24
SNX1-208ENST00000559844 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.81■■□□□ 1.245e-7■■□□□ 12.3
SNX1-208ENST00000559844 EXOC5O00471 708 aa22.8■■□□□ 1.24
SNX1-208ENST00000559844 MS4A1P11836 297 aa22.8■■□□□ 1.24
SNX1-208ENST00000559844 SEPT12Q8IYM1 358 aa22.8■■□□□ 1.24
SNX1-208ENST00000559844 ZNF530Q6P9A1 599 aaPredicted RBP22.79■■□□□ 1.24
SNX1-208ENST00000559844 PCDH11XQ9BZA7 1347 aa22.79■■□□□ 1.24
SNX1-208ENST00000559844 PCDH11YQ9BZA8 1340 aa22.79■■□□□ 1.24
SNX1-208ENST00000559844 GAS2L2Q8NHY3 880 aa22.78■■□□□ 1.24
SNX1-208ENST00000559844 VIRMAQ69YN4 1812 aaKnown RBP22.78■■□□□ 1.24
SNX1-208ENST00000559844 DDX54Q8TDD1 881 aaKnown RBP22.78■■□□□ 1.24
SNX1-208ENST00000559844 GNAI1P63096 354 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms