RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 NBPF6Q5VWK0 638 aa12.8□□□□□ -0.36
HDDC3-204ENST00000559834 NBPF4Q96M43 638 aa12.8□□□□□ -0.36
HDDC3-204ENST00000559834 GGNBP2Q9H3C7 697 aa12.8□□□□□ -0.36
HDDC3-204ENST00000559834 RTL1A6NKG5 1358 aa12.8□□□□□ -0.36
HDDC3-204ENST00000559834 MAP3K5Q99683 1374 aa12.8□□□□□ -0.36
HDDC3-204ENST00000559834 BTAF1O14981 1849 aa12.79□□□□□ -0.36
HDDC3-204ENST00000559834 TATP17735 454 aaPredicted RBP12.79□□□□□ -0.36
HDDC3-204ENST00000559834 ZNF784Q8NCA9 323 aaPredicted RBP12.79□□□□□ -0.36
HDDC3-204ENST00000559834 CCNL1Q9UK58 526 aaPredicted RBP12.79□□□□□ -0.36
HDDC3-204ENST00000559834 MYOM1P52179 1685 aa12.78□□□□□ -0.36
HDDC3-204ENST00000559834 KCNQ4P56696 695 aa12.78□□□□□ -0.36
HDDC3-204ENST00000559834 KLHL34Q8N239 644 aa12.78□□□□□ -0.36
HDDC3-204ENST00000559834 PNPLA7Q6ZV29 1317 aa12.78□□□□□ -0.36
HDDC3-204ENST00000559834 USP47Q96K76 1375 aa12.78□□□□□ -0.36
HDDC3-204ENST00000559834 SMG6Q86US8 1419 aaKnown RBP12.78□□□□□ -0.36
HDDC3-204ENST00000559834 MSH5O43196 834 aa12.77□□□□□ -0.37
HDDC3-204ENST00000559834 FAM208AQ9UK61 1670 aaKnown RBP12.77□□□□□ -0.37
HDDC3-204ENST00000559834 TRIM26Q12899 539 aaPredicted RBP12.76□□□□□ -0.37
HDDC3-204ENST00000559834 HSP90AB2PQ58FF8 381 aa12.76□□□□□ -0.37
HDDC3-204ENST00000559834 PAPPAQ13219 1627 aa12.76□□□□□ -0.37
HDDC3-204ENST00000559834 INSRP06213 1382 aa12.75□□□□□ -0.37
HDDC3-204ENST00000559834 KIF24Q5T7B8 1368 aa12.75□□□□□ -0.37
HDDC3-204ENST00000559834 USHBP1Q8N6Y0 703 aa12.75□□□□□ -0.37
HDDC3-204ENST00000559834 PCDH11XQ9BZA7 1347 aa12.74□□□□□ -0.37
HDDC3-204ENST00000559834 PCDH11YQ9BZA8 1340 aa12.74□□□□□ -0.37
HDDC3-204ENST00000559834 PELP1Q8IZL8 1130 aaKnown RBP12.74□□□□□ -0.37
HDDC3-204ENST00000559834 FLAD1Q8NFF5 587 aa12.74□□□□□ -0.37
HDDC3-204ENST00000559834 TIMELESSQ9UNS1 1208 aa12.74□□□□□ -0.37
HDDC3-204ENST00000559834 MEGF6O75095 1541 aa12.73□□□□□ -0.37
HDDC3-204ENST00000559834 NSD2O96028 1365 aa12.73□□□□□ -0.37
HDDC3-204ENST00000559834 FLT4P35916 1363 aa12.73□□□□□ -0.37
HDDC3-204ENST00000559834 MPRIPQ6WCQ1 1025 aa12.73□□□□□ -0.37
HDDC3-204ENST00000559834 COL23A1Q86Y22 540 aaPredicted RBP12.73□□□□□ -0.37
HDDC3-204ENST00000559834 SMARCC1Q92922 1105 aaPredicted RBP12.73□□□□□ -0.37
HDDC3-204ENST00000559834 PPM1GO15355 546 aaPredicted RBP12.72□□□□□ -0.37
HDDC3-204ENST00000559834 GRIN3BO60391 1043 aa12.72□□□□□ -0.37
HDDC3-204ENST00000559834 CARD14Q9BXL6 1004 aa12.71□□□□□ -0.37
HDDC3-204ENST00000559834 SPG7Q9UQ90 795 aa12.71□□□□□ -0.37
HDDC3-204ENST00000559834 CYP27B1O15528 508 aa12.7□□□□□ -0.38
HDDC3-204ENST00000559834 CHD4Q14839 1912 aa12.7□□□□□ -0.38
HDDC3-204ENST00000559834 QSER1Q2KHR3 1735 aa12.69□□□□□ -0.38
HDDC3-204ENST00000559834 C1QTNF8P60827 252 aa12.69□□□□□ -0.38
HDDC3-204ENST00000559834 NLGN2Q8NFZ4 835 aa12.69□□□□□ -0.38
HDDC3-204ENST00000559834 EMILIN1Q9Y6C2 1016 aa12.69□□□□□ -0.38
HDDC3-204ENST00000559834 RGPD2P0DJD1 1756 aa12.69□□□□□ -0.38
HDDC3-204ENST00000559834 PALLDQ8WX93 1383 aa12.69□□□□□ -0.38
HDDC3-204ENST00000559834 DOT1LQ8TEK3 1739 aa12.68□□□□□ -0.38
HDDC3-204ENST00000559834 WASHC2AQ641Q2 1341 aa12.68□□□□□ -0.38
HDDC3-204ENST00000559834 NKX1-1Q15270 411 aaPredicted RBP12.68□□□□□ -0.38
HDDC3-204ENST00000559834 AK7Q96M32 723 aa12.68□□□□□ -0.38
HDDC3-204ENST00000559834 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.68□□□□□ -0.38
HDDC3-204ENST00000559834 CD2APQ9Y5K6 639 aa12.68□□□□□ -0.38
HDDC3-204ENST00000559834 MSL1Q68DK7 614 aa12.67□□□□□ -0.38
HDDC3-204ENST00000559834 PIGBQ92521 554 aa12.67□□□□□ -0.38
HDDC3-204ENST00000559834 NSD3Q9BZ95 1437 aa12.67□□□□□ -0.38
HDDC3-204ENST00000559834 LY75O60449 1722 aa12.67□□□□□ -0.38
HDDC3-204ENST00000559834 SENP3-EIF4A1A0A087X0R7 540 aa12.66□□□□□ -0.38
HDDC3-204ENST00000559834 EYA1Q99502 592 aa12.66□□□□□ -0.38
HDDC3-204ENST00000559834 GIGYF1O75420 1035 aaPredicted RBP12.65□□□□□ -0.38
HDDC3-204ENST00000559834 IFNL2Q8IZJ0 200 aa12.65□□□□□ -0.38
HDDC3-204ENST00000559834 TMOD3Q9NYL9 352 aa12.65□□□□□ -0.38
HDDC3-204ENST00000559834 COL24A1Q17RW2 1714 aa12.65□□□□□ -0.38
HDDC3-204ENST00000559834 SHANK3Q9BYB0 1731 aa12.65□□□□□ -0.38
HDDC3-204ENST00000559834 LOC102724428A0A0B4J2F2 783 aa12.64□□□□□ -0.39
HDDC3-204ENST00000559834 YBX3P16989 372 aaKnown RBP eCLIP12.64□□□□□ -0.392e-8■■■□□ 14.6
HDDC3-204ENST00000559834 SIK1P57059 783 aa12.64□□□□□ -0.39
HDDC3-204ENST00000559834 POLR3GLQ9BT43 218 aa12.64□□□□□ -0.39
HDDC3-204ENST00000559834 POLKQ9UBT6 870 aa12.64□□□□□ -0.39
HDDC3-204ENST00000559834 CLSPNQ9HAW4 1339 aa12.63□□□□□ -0.39
HDDC3-204ENST00000559834 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.63□□□□□ -0.39
HDDC3-204ENST00000559834 PHF14O94880 888 aa12.63□□□□□ -0.39
HDDC3-204ENST00000559834 SSFA2P28290 1259 aa12.63□□□□□ -0.39
HDDC3-204ENST00000559834 ATP6V1AP38606 617 aa12.62□□□□□ -0.39
HDDC3-204ENST00000559834 KIF20BQ96Q89 1820 aa12.62□□□□□ -0.39
HDDC3-204ENST00000559834 TUBGCP6Q96RT7 1819 aa12.61□□□□□ -0.39
HDDC3-204ENST00000559834 HSP90AB1P08238 724 aaKnown RBP12.61□□□□□ -0.39
HDDC3-204ENST00000559834 PHKG2P15735 406 aa12.61□□□□□ -0.39
HDDC3-204ENST00000559834 TNNT2P45379 298 aaPredicted RBP12.61□□□□□ -0.39
HDDC3-204ENST00000559834 PCGF6Q9BYE7 350 aa12.61□□□□□ -0.39
HDDC3-204ENST00000559834 ASAP1Q9ULH1 1129 aa12.61□□□□□ -0.39
HDDC3-204ENST00000559834 NCAPD2Q15021 1401 aa12.61□□□□□ -0.39
HDDC3-204ENST00000559834 EIF4G2P78344 907 aaKnown RBP eCLIP12.6□□□□□ -0.39
HDDC3-204ENST00000559834 EIF4A2Q14240 407 aaKnown RBP12.6□□□□□ -0.39
HDDC3-204ENST00000559834 PLEKHO1Q53GL0 409 aaPredicted RBP12.6□□□□□ -0.39
HDDC3-204ENST00000559834 LINC00116Q8NCU8 138 aa12.6□□□□□ -0.39
HDDC3-204ENST00000559834 C5P01031 1676 aa12.59□□□□□ -0.39
HDDC3-204ENST00000559834 ERVV-2B6SEH9 535 aa12.59□□□□□ -0.39
HDDC3-204ENST00000559834 GNPATO15228 680 aa12.59□□□□□ -0.39
HDDC3-204ENST00000559834 DCAF5Q96JK2 942 aa12.59□□□□□ -0.39
HDDC3-204ENST00000559834 ATG3Q9NT62 314 aa12.59□□□□□ -0.39
HDDC3-204ENST00000559834 PLEKHG2Q9H7P9 1386 aa12.58□□□□□ -0.4
HDDC3-204ENST00000559834 ITPK1Q13572 414 aa12.58□□□□□ -0.4
HDDC3-204ENST00000559834 AMOTQ4VCS5 1084 aa12.58□□□□□ -0.4
HDDC3-204ENST00000559834 TRAPPC3LQ5T215 181 aa12.58□□□□□ -0.4
HDDC3-204ENST00000559834 SMIM5Q71RC9 77 aa12.58□□□□□ -0.4
HDDC3-204ENST00000559834 AMIGO3Q86WK7 504 aa12.58□□□□□ -0.4
HDDC3-204ENST00000559834 PANK3Q9H999 370 aa12.58□□□□□ -0.4
HDDC3-204ENST00000559834 RTCBQ9Y3I0 505 aaKnown RBP12.58□□□□□ -0.4
HDDC3-204ENST00000559834 C4BP0C0L5 1744 aa12.57□□□□□ -0.4
HDDC3-204ENST00000559834 NLGN1Q8N2Q7 840 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms