RNA–Protein interactions for RNA: ENST00000559276.5

USP3-212, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-212ENST00000559276 HOXC9P31274 260 aa8.19□□□□□ -1.1
USP3-212ENST00000559276 LTV1Q96GA3 475 aaPredicted RBP8.19□□□□□ -1.1
USP3-212ENST00000559276 SYT17Q9BSW7 474 aa8.19□□□□□ -1.1
USP3-212ENST00000559276 FHDC1Q9C0D6 1143 aaPredicted RBP8.19□□□□□ -1.1
USP3-212ENST00000559276 MTFR1LQ9H019 292 aa8.19□□□□□ -1.1
USP3-212ENST00000559276 ANKRD36BQ8N2N9 1353 aa8.19□□□□□ -1.1
USP3-212ENST00000559276 KIF20BQ96Q89 1820 aa8.18□□□□□ -1.1
USP3-212ENST00000559276 FYB1O15117 783 aa8.18□□□□□ -1.1
USP3-212ENST00000559276 KCNQ4P56696 695 aa8.18□□□□□ -1.1
USP3-212ENST00000559276 DDX54Q8TDD1 881 aaKnown RBP8.18□□□□□ -1.1
USP3-212ENST00000559276 GOLGB1Q14789 3259 aaKnown RBP8.17□□□□□ -1.1
USP3-212ENST00000559276 RRS1Q15050 365 aaKnown RBP8.17□□□□□ -1.1
USP3-212ENST00000559276 NBPF6Q5VWK0 638 aa8.17□□□□□ -1.1
USP3-212ENST00000559276 NBPF4Q96M43 638 aa8.17□□□□□ -1.1
USP3-212ENST00000559276 PNPLA7Q6ZV29 1317 aa8.17□□□□□ -1.1
USP3-212ENST00000559276 MAP3K5Q99683 1374 aa8.17□□□□□ -1.1
USP3-212ENST00000559276 TOGARAM1Q9Y4F4 1720 aa8.17□□□□□ -1.1
USP3-212ENST00000559276 KAT6BQ8WYB5 2073 aa8.17□□□□□ -1.1
USP3-212ENST00000559276 RTL1A6NKG5 1358 aa8.16□□□□□ -1.1
USP3-212ENST00000559276 PRIM1P49642 420 aaKnown RBP8.16□□□□□ -1.1
USP3-212ENST00000559276 COG3Q96JB2 828 aa8.16□□□□□ -1.1
USP3-212ENST00000559276 USP47Q96K76 1375 aa8.16□□□□□ -1.1
USP3-212ENST00000559276 CARD14Q9BXL6 1004 aa8.16□□□□□ -1.1
USP3-212ENST00000559276 GGNBP2Q9H3C7 697 aa8.16□□□□□ -1.1
USP3-212ENST00000559276 ANKRD26Q9UPS8 1709 aa8.16□□□□□ -1.1
USP3-212ENST00000559276 AMPHP49418 695 aa8.15□□□□□ -1.1
USP3-212ENST00000559276 HSP90AB2PQ58FF8 381 aa8.15□□□□□ -1.1
USP3-212ENST00000559276 SLC27A3Q5K4L6 730 aa8.15□□□□□ -1.1
USP3-212ENST00000559276 USHBP1Q8N6Y0 703 aa8.15□□□□□ -1.1
USP3-212ENST00000559276 ZCRB1Q8TBF4 217 aaKnown RBP8.15□□□□□ -1.1
USP3-212ENST00000559276 ARXQ96QS3 562 aa8.15□□□□□ -1.1
USP3-212ENST00000559276 CHD4Q14839 1912 aa8.15□□□□□ -1.11
USP3-212ENST00000559276 TAF1LQ8IZX4 1826 aa8.15□□□□□ -1.11
USP3-212ENST00000559276 PKD1L3Q7Z443 1732 aa8.15□□□□□ -1.11
USP3-212ENST00000559276 C5P01031 1676 aa8.14□□□□□ -1.11
USP3-212ENST00000559276 NCAPD2Q15021 1401 aa8.14□□□□□ -1.11
USP3-212ENST00000559276 ITGB4P16144 1822 aa8.14□□□□□ -1.11
USP3-212ENST00000559276 INSRP06213 1382 aa8.13□□□□□ -1.11
USP3-212ENST00000559276 ZNF784Q8NCA9 323 aaPredicted RBP8.13□□□□□ -1.11
USP3-212ENST00000559276 SYTL4Q96C24 671 aaPredicted RBP8.13□□□□□ -1.11
USP3-212ENST00000559276 MAP2P11137 1827 aaKnown RBP8.13□□□□□ -1.11
USP3-212ENST00000559276 CYP27B1O15528 508 aa8.12□□□□□ -1.11
USP3-212ENST00000559276 TMF1P82094 1093 aa8.12□□□□□ -1.11
USP3-212ENST00000559276 COL23A1Q86Y22 540 aaPredicted RBP8.12□□□□□ -1.11
USP3-212ENST00000559276 NLGN2Q8NFZ4 835 aa8.12□□□□□ -1.11
USP3-212ENST00000559276 SLC16A10Q8TF71 515 aa8.12□□□□□ -1.11
USP3-212ENST00000559276 FLT4P35916 1363 aa8.11□□□□□ -1.11
USP3-212ENST00000559276 KIF24Q5T7B8 1368 aa8.11□□□□□ -1.11
USP3-212ENST00000559276 CGNL1Q0VF96 1302 aa8.11□□□□□ -1.11
USP3-212ENST00000559276 DCAF8L1A6NGE4 600 aa8.11□□□□□ -1.11
USP3-212ENST00000559276 AMIGO3Q86WK7 504 aa8.11□□□□□ -1.11
USP3-212ENST00000559276 TFCP2L1Q9NZI6 479 aa8.11□□□□□ -1.11
USP3-212ENST00000559276 CCNL1Q9UK58 526 aaPredicted RBP8.11□□□□□ -1.11
USP3-212ENST00000559276 EMILIN1Q9Y6C2 1016 aa8.11□□□□□ -1.11
USP3-212ENST00000559276 NSD3Q9BZ95 1437 aa8.11□□□□□ -1.11
USP3-212ENST00000559276 C4BP0C0L5 1744 aa8.1□□□□□ -1.11
USP3-212ENST00000559276 UBR3Q6ZT12 1888 aa8.1□□□□□ -1.11
USP3-212ENST00000559276 SMG6Q86US8 1419 aaKnown RBP8.1□□□□□ -1.11
USP3-212ENST00000559276 TATP17735 454 aaPredicted RBP8.09□□□□□ -1.11
USP3-212ENST00000559276 NKX1-1Q15270 411 aaPredicted RBP8.09□□□□□ -1.11
USP3-212ENST00000559276 RAPGEF4Q8WZA2 1011 aa8.09□□□□□ -1.11
USP3-212ENST00000559276 PALLDQ8WX93 1383 aa8.09□□□□□ -1.12
USP3-212ENST00000559276 PCDH11XQ9BZA7 1347 aa8.08□□□□□ -1.12
USP3-212ENST00000559276 PCDH11YQ9BZA8 1340 aa8.08□□□□□ -1.12
USP3-212ENST00000559276 YBX3P16989 372 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP3-212ENST00000559276 SMIM5Q71RC9 77 aa8.08□□□□□ -1.12
USP3-212ENST00000559276 MIER1Q8N108 512 aa8.08□□□□□ -1.12
USP3-212ENST00000559276 WASHC2AQ641Q2 1341 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 POLD1P28340 1107 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 GPR162Q16538 588 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 CDCA8Q53HL2 280 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 MSL1Q68DK7 614 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 MPRIPQ6WCQ1 1025 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 PIGBQ92521 554 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 EYA1Q99502 592 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 POLKQ9UBT6 870 aa8.07□□□□□ -1.12
USP3-212ENST00000559276 KLHL34Q8N239 644 aa8.06□□□□□ -1.12
USP3-212ENST00000559276 KIAA1551Q9HCM1 1747 aa8.06□□□□□ -1.12
USP3-212ENST00000559276 ITPK1Q13572 414 aa8.05□□□□□ -1.12
USP3-212ENST00000559276 NCBP3Q53F19 620 aaKnown RBP8.05□□□□□ -1.12
USP3-212ENST00000559276 LINC00116Q8NCU8 138 aa8.05□□□□□ -1.12
USP3-212ENST00000559276 TIMELESSQ9UNS1 1208 aa8.05□□□□□ -1.12
USP3-212ENST00000559276 ZNF831Q5JPB2 1677 aa8.05□□□□□ -1.12
USP3-212ENST00000559276 COL5A3P25940 1745 aaPredicted RBP8.04□□□□□ -1.12
USP3-212ENST00000559276 PPM1GO15355 546 aaPredicted RBP8.04□□□□□ -1.12
USP3-212ENST00000559276 MSH5O43196 834 aa8.04□□□□□ -1.12
USP3-212ENST00000559276 PHKG2P15735 406 aa8.04□□□□□ -1.12
USP3-212ENST00000559276 C1QTNF8P60827 252 aa8.04□□□□□ -1.12
USP3-212ENST00000559276 EIF4A2Q14240 407 aaKnown RBP8.04□□□□□ -1.12
USP3-212ENST00000559276 SLC4A9Q96Q91 983 aa8.04□□□□□ -1.12
USP3-212ENST00000559276 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.04□□□□□ -1.12
USP3-212ENST00000559276 ASAP1Q9ULH1 1129 aa8.04□□□□□ -1.12
USP3-212ENST00000559276 KDRP35968 1356 aa8.04□□□□□ -1.12
USP3-212ENST00000559276 LOC102724428A0A0B4J2F2 783 aa8.03□□□□□ -1.12
USP3-212ENST00000559276 SIK1P57059 783 aa8.03□□□□□ -1.12
USP3-212ENST00000559276 SMARCC1Q92922 1105 aaPredicted RBP8.03□□□□□ -1.12
USP3-212ENST00000559276 ATG3Q9NT62 314 aa8.03□□□□□ -1.12
USP3-212ENST00000559276 SPG7Q9UQ90 795 aa8.03□□□□□ -1.12
USP3-212ENST00000559276 CD2APQ9Y5K6 639 aa8.03□□□□□ -1.12
USP3-212ENST00000559276 KIF13BQ9NQT8 1826 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms