RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 USHBP1Q8N6Y0 703 aa13.24□□□□□ -0.29
SPG11-214ENST00000558989 HSP90AB2PQ58FF8 381 aa13.23□□□□□ -0.29
SPG11-214ENST00000558989 SBF2Q86WG5 1849 aa13.23□□□□□ -0.29
SPG11-214ENST00000558989 FAM208AQ9UK61 1670 aaKnown RBP13.23□□□□□ -0.29
SPG11-214ENST00000558989 TNS1Q9HBL0 1735 aaKnown RBP13.22□□□□□ -0.29
SPG11-214ENST00000558989 CCDC7Q96M83 1385 aa13.22□□□□□ -0.29
SPG11-214ENST00000558989 FAM196AQ6ZSG2 479 aa13.22□□□□□ -0.29
SPG11-214ENST00000558989 CCDC125Q86Z20 511 aa13.22□□□□□ -0.29
SPG11-214ENST00000558989 KNSTRNQ9Y448 316 aa13.22□□□□□ -0.29
SPG11-214ENST00000558989 EXOC5O00471 708 aa13.21□□□□□ -0.29
SPG11-214ENST00000558989 EN1Q05925 392 aaPredicted RBP13.21□□□□□ -0.29
SPG11-214ENST00000558989 WASHC2AQ641Q2 1341 aa13.2□□□□□ -0.3
SPG11-214ENST00000558989 IL2RBP14784 551 aa13.2□□□□□ -0.3
SPG11-214ENST00000558989 BAG6P46379 1132 aa13.2□□□□□ -0.3
SPG11-214ENST00000558989 MARCH10Q8NA82 808 aaPredicted RBP13.2□□□□□ -0.3
SPG11-214ENST00000558989 DISP2A7MBM2 1401 aa13.2□□□□□ -0.3
SPG11-214ENST00000558989 APBA3O96018 575 aa13.19□□□□□ -0.3
SPG11-214ENST00000558989 CC2D1BQ5T0F9 858 aaKnown RBP13.19□□□□□ -0.3
SPG11-214ENST00000558989 NBPF6Q5VWK0 638 aa13.19□□□□□ -0.3
SPG11-214ENST00000558989 MORC1Q86VD1 984 aa13.19□□□□□ -0.3
SPG11-214ENST00000558989 NBPF4Q96M43 638 aa13.19□□□□□ -0.3
SPG11-214ENST00000558989 RTL1A6NKG5 1358 aa13.19□□□□□ -0.3
SPG11-214ENST00000558989 FLT4P35916 1363 aa13.19□□□□□ -0.3
SPG11-214ENST00000558989 SMG6Q86US8 1419 aaKnown RBP13.19□□□□□ -0.3
SPG11-214ENST00000558989 OVOS2A0A0G2JMS6 1433 aa13.18□□□□□ -0.3
SPG11-214ENST00000558989 CDCA7Q9BWT1 371 aaPredicted RBP13.18□□□□□ -0.3
SPG11-214ENST00000558989 PTF1AQ7RTS3 328 aa13.18□□□□□ -0.3
SPG11-214ENST00000558989 DDX54Q8TDD1 881 aaKnown RBP13.18□□□□□ -0.3
SPG11-214ENST00000558989 ACSBG1Q96GR2 724 aa13.18□□□□□ -0.3
SPG11-214ENST00000558989 POLKQ9UBT6 870 aa13.18□□□□□ -0.3
SPG11-214ENST00000558989 EZH2Q15910 746 aaKnown RBP13.17□□□□□ -0.3
SPG11-214ENST00000558989 INSRP06213 1382 aa13.16□□□□□ -0.3
SPG11-214ENST00000558989 TNS2Q63HR2 1409 aa13.16□□□□□ -0.3
SPG11-214ENST00000558989 MEGF6O75095 1541 aa13.15□□□□□ -0.3
SPG11-214ENST00000558989 SHANK3Q9BYB0 1731 aa13.15□□□□□ -0.3
SPG11-214ENST00000558989 PSDA5PKW4 1024 aaPredicted RBP13.13□□□□□ -0.31
SPG11-214ENST00000558989 KCNQ2O43526 872 aa13.13□□□□□ -0.31
SPG11-214ENST00000558989 RAPGEF4Q8WZA2 1011 aa13.13□□□□□ -0.31
SPG11-214ENST00000558989 NSD2O96028 1365 aa13.13□□□□□ -0.31
SPG11-214ENST00000558989 ECM2O94769 699 aaPredicted RBP13.12□□□□□ -0.31
SPG11-214ENST00000558989 TATP17735 454 aaPredicted RBP13.12□□□□□ -0.31
SPG11-214ENST00000558989 DOT1LQ8TEK3 1739 aa13.12□□□□□ -0.31
SPG11-214ENST00000558989 PER1O15534 1290 aaPredicted RBP13.11□□□□□ -0.31
SPG11-214ENST00000558989 EIF4A2Q14240 407 aaKnown RBP13.11□□□□□ -0.31
SPG11-214ENST00000558989 ZCRB1Q8TBF4 217 aaKnown RBP13.11□□□□□ -0.31
SPG11-214ENST00000558989 SYTL4Q96C24 671 aaPredicted RBP13.11□□□□□ -0.31
SPG11-214ENST00000558989 EYA1Q99502 592 aa13.11□□□□□ -0.31
SPG11-214ENST00000558989 KIF24Q5T7B8 1368 aa13.11□□□□□ -0.31
SPG11-214ENST00000558989 BTAF1O14981 1849 aa13.11□□□□□ -0.31
SPG11-214ENST00000558989 CAMKK2Q96RR4 588 aa13.11□□□□□ -0.31
SPG11-214ENST00000558989 NUP188Q5SRE5 1749 aa13.1□□□□□ -0.31
SPG11-214ENST00000558989 NHSQ6T4R5 1651 aa13.1□□□□□ -0.31
SPG11-214ENST00000558989 RREB1Q92766 1687 aa13.09□□□□□ -0.31
SPG11-214ENST00000558989 PROM2Q8N271 834 aa13.09□□□□□ -0.31
SPG11-214ENST00000558989 BCL11BQ9C0K0 894 aaPredicted RBP13.09□□□□□ -0.31
SPG11-214ENST00000558989 MTHFSP49914 203 aa13.08□□□□□ -0.32
SPG11-214ENST00000558989 R3HDM1Q15032 1099 aaKnown RBP13.08□□□□□ -0.32
SPG11-214ENST00000558989 PRIM1P49642 420 aaKnown RBP13.06□□□□□ -0.32
SPG11-214ENST00000558989 ITGB4P16144 1822 aa13.06□□□□□ -0.32
SPG11-214ENST00000558989 PKD1L3Q7Z443 1732 aa13.06□□□□□ -0.32
SPG11-214ENST00000558989 AEBP1Q8IUX7 1158 aa13.06□□□□□ -0.32
SPG11-214ENST00000558989 PCDH11XQ9BZA7 1347 aa13.04□□□□□ -0.32
SPG11-214ENST00000558989 PCDH11YQ9BZA8 1340 aa13.04□□□□□ -0.32
SPG11-214ENST00000558989 BCL9O00512 1426 aa13.04□□□□□ -0.32
SPG11-214ENST00000558989 RGPD3A6NKT7 1758 aaPredicted RBP13.04□□□□□ -0.32
SPG11-214ENST00000558989 RGPD4Q7Z3J3 1758 aa13.04□□□□□ -0.32
SPG11-214ENST00000558989 CYP27B1O15528 508 aa13.04□□□□□ -0.32
SPG11-214ENST00000558989 BRPF1P55201 1214 aaPredicted RBP13.04□□□□□ -0.32
SPG11-214ENST00000558989 KCNQ4P56696 695 aa13.04□□□□□ -0.32
SPG11-214ENST00000558989 SULT6B1Q6IMI4 303 aa13.04□□□□□ -0.32
SPG11-214ENST00000558989 TOGARAM1Q9Y4F4 1720 aa13.03□□□□□ -0.32
SPG11-214ENST00000558989 PLSCR1O15162 318 aa13.03□□□□□ -0.32
SPG11-214ENST00000558989 HMOX1P09601 288 aa13.03□□□□□ -0.32
SPG11-214ENST00000558989 DDX10Q13206 875 aaKnown RBP13.03□□□□□ -0.32
SPG11-214ENST00000558989 TXNRD1Q16881 649 aa13.03□□□□□ -0.32
SPG11-214ENST00000558989 SPG7Q9UQ90 795 aa13.03□□□□□ -0.32
SPG11-214ENST00000558989 IGSF1Q8N6C5 1336 aa13.03□□□□□ -0.32
SPG11-214ENST00000558989 EIF5BO60841 1220 aaKnown RBP13.02□□□□□ -0.32
SPG11-214ENST00000558989 IL13P35225 146 aa13.02□□□□□ -0.32
SPG11-214ENST00000558989 NBPF14Q5TI25 921 aa13.02□□□□□ -0.32
SPG11-214ENST00000558989 MPRIPQ6WCQ1 1025 aa13.02□□□□□ -0.32
SPG11-214ENST00000558989 PARD3Q8TEW0 1356 aa13.02□□□□□ -0.32
SPG11-214ENST00000558989 NCAPD2Q15021 1401 aa13.01□□□□□ -0.33
SPG11-214ENST00000558989 VIRMAQ69YN4 1812 aaKnown RBP13.01□□□□□ -0.33
SPG11-214ENST00000558989 U2SURPO15042 1029 aaKnown RBP13.01□□□□□ -0.33
SPG11-214ENST00000558989 ANO8Q9HCE9 1232 aaPredicted RBP13.01□□□□□ -0.33
SPG11-214ENST00000558989 DIAPH1O60610 1272 aaKnown RBP13□□□□□ -0.33
SPG11-214ENST00000558989 NPC1L1Q9UHC9 1359 aa13□□□□□ -0.33
SPG11-214ENST00000558989 SPDYE4A6NLX3 237 aa12.99□□□□□ -0.33
SPG11-214ENST00000558989 ZNF530Q6P9A1 599 aaPredicted RBP12.99□□□□□ -0.33
SPG11-214ENST00000558989 IFNL2Q8IZJ0 200 aa12.99□□□□□ -0.33
SPG11-214ENST00000558989 LY75O60449 1722 aa12.98□□□□□ -0.33
SPG11-214ENST00000558989 PHKG2P15735 406 aa12.98□□□□□ -0.33
SPG11-214ENST00000558989 PPP2R1AP30153 589 aa12.98□□□□□ -0.33
SPG11-214ENST00000558989 ZEB1P37275 1124 aaPredicted RBP12.98□□□□□ -0.33
SPG11-214ENST00000558989 PLEKHO1Q53GL0 409 aaPredicted RBP12.98□□□□□ -0.33
SPG11-214ENST00000558989 LRRC4BQ9NT99 713 aa12.97□□□□□ -0.33
SPG11-214ENST00000558989 RGL2O15211 777 aa12.97□□□□□ -0.33
SPG11-214ENST00000558989 PDGFDQ9GZP0 370 aaPredicted RBP12.97□□□□□ -0.33
SPG11-214ENST00000558989 STK32BQ9NY57 414 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms