RNA–Protein interactions for RNA: ENST00000558890.5

LRRC28-211, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 978 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-211ENST00000558890 USP35Q9P2H5 1018 aa10.19□□□□□ -0.78
LRRC28-211ENST00000558890 CCDC9Q9Y3X0 531 aaKnown RBP10.19□□□□□ -0.78
LRRC28-211ENST00000558890 TNNT2P45379 298 aaPredicted RBP10.18□□□□□ -0.78
LRRC28-211ENST00000558890 KRT27Q7Z3Y8 459 aa10.18□□□□□ -0.78
LRRC28-211ENST00000558890 WNK3Q9BYP7 1800 aa10.17□□□□□ -0.78
LRRC28-211ENST00000558890 MARCH10Q8NA82 808 aaPredicted RBP10.17□□□□□ -0.78
LRRC28-211ENST00000558890 EYA1Q99502 592 aa10.17□□□□□ -0.78
LRRC28-211ENST00000558890 NLRP2Q9NX02 1062 aa10.17□□□□□ -0.78
LRRC28-211ENST00000558890 U3KPZ7 1027 aaPredicted RBP10.17□□□□□ -0.78
LRRC28-211ENST00000558890 BRWD3Q6RI45 1802 aa10.17□□□□□ -0.78
LRRC28-211ENST00000558890 MTHFSP49914 203 aa10.16□□□□□ -0.78
LRRC28-211ENST00000558890 EIF4A2Q14240 407 aaKnown RBP10.16□□□□□ -0.78
LRRC28-211ENST00000558890 FAM182BQ5T319 152 aa10.16□□□□□ -0.78
LRRC28-211ENST00000558890 LTV1Q96GA3 475 aaPredicted RBP10.16□□□□□ -0.78
LRRC28-211ENST00000558890 CDCA7Q9BWT1 371 aaPredicted RBP10.16□□□□□ -0.78
LRRC28-211ENST00000558890 PARP4Q9UKK3 1724 aaKnown RBP10.16□□□□□ -0.78
LRRC28-211ENST00000558890 KDRP35968 1356 aa10.15□□□□□ -0.78
LRRC28-211ENST00000558890 CSB-PGBD3P0DP91 1061 aa10.15□□□□□ -0.78
LRRC28-211ENST00000558890 IL13P35225 146 aa10.15□□□□□ -0.78
LRRC28-211ENST00000558890 IL2RBP14784 551 aa10.14□□□□□ -0.79
LRRC28-211ENST00000558890 PNISRQ8TF01 805 aaKnown RBP10.14□□□□□ -0.79
LRRC28-211ENST00000558890 NUDCQ9Y266 331 aa10.14□□□□□ -0.79
LRRC28-211ENST00000558890 BCL9O00512 1426 aa10.14□□□□□ -0.79
LRRC28-211ENST00000558890 IGSF1Q8N6C5 1336 aa10.13□□□□□ -0.79
LRRC28-211ENST00000558890 EXOC5O00471 708 aa10.13□□□□□ -0.79
LRRC28-211ENST00000558890 PPM1GO15355 546 aaPredicted RBP10.13□□□□□ -0.79
LRRC28-211ENST00000558890 USHBP1Q8N6Y0 703 aa10.13□□□□□ -0.79
LRRC28-211ENST00000558890 PNNQ9H307 717 aaKnown RBP10.13□□□□□ -0.79
LRRC28-211ENST00000558890 TSHZ2Q9NRE2 1034 aa10.13□□□□□ -0.79
LRRC28-211ENST00000558890 PKD1L3Q7Z443 1732 aa10.13□□□□□ -0.79
LRRC28-211ENST00000558890 DIAPH1O60610 1272 aaKnown RBP10.12□□□□□ -0.79
LRRC28-211ENST00000558890 DDB1Q16531 1140 aa10.12□□□□□ -0.79
LRRC28-211ENST00000558890 FAM196AQ6ZSG2 479 aa10.12□□□□□ -0.79
LRRC28-211ENST00000558890 PTF1AQ7RTS3 328 aa10.12□□□□□ -0.79
LRRC28-211ENST00000558890 MEGF6O75095 1541 aa10.12□□□□□ -0.79
LRRC28-211ENST00000558890 RGPD2P0DJD1 1756 aa10.11□□□□□ -0.79
LRRC28-211ENST00000558890 PDE3BQ13370 1112 aa10.11□□□□□ -0.79
LRRC28-211ENST00000558890 CCDC125Q86Z20 511 aa10.11□□□□□ -0.79
LRRC28-211ENST00000558890 NGEFQ8N5V2 710 aa10.11□□□□□ -0.79
LRRC28-211ENST00000558890 RNF39Q9H2S5 420 aa10.11□□□□□ -0.79
LRRC28-211ENST00000558890 PPP4R2Q9NY27 417 aa10.11□□□□□ -0.79
LRRC28-211ENST00000558890 OVOS2A0A0G2JMS6 1433 aa10.1□□□□□ -0.79
LRRC28-211ENST00000558890 CYP27B1O15528 508 aa10.1□□□□□ -0.79
LRRC28-211ENST00000558890 FCHSD2O94868 740 aa10.1□□□□□ -0.79
LRRC28-211ENST00000558890 IRX6P78412 446 aaPredicted RBP10.09□□□□□ -0.79
LRRC28-211ENST00000558890 AEBP1Q8IUX7 1158 aa10.09□□□□□ -0.79
LRRC28-211ENST00000558890 ZCRB1Q8TBF4 217 aaKnown RBP10.09□□□□□ -0.79
LRRC28-211ENST00000558890 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.09□□□□□ -0.79
LRRC28-211ENST00000558890 TNS2Q63HR2 1409 aa10.08□□□□□ -0.8
LRRC28-211ENST00000558890 LRRC37A3O60309 1634 aa10.08□□□□□ -0.8
LRRC28-211ENST00000558890 SRCAPQ6ZRS2 3230 aa10.08□□□□□ -0.8
LRRC28-211ENST00000558890 A0A0G2JS52 829 aa10.08□□□□□ -0.8
LRRC28-211ENST00000558890 MYT1Q01538 1121 aa10.08□□□□□ -0.8
LRRC28-211ENST00000558890 NKX1-1Q15270 411 aaPredicted RBP10.08□□□□□ -0.8
LRRC28-211ENST00000558890 CAMKK2Q96RR4 588 aa10.08□□□□□ -0.8
LRRC28-211ENST00000558890 ADAMTS7Q9UKP4 1686 aa10.08□□□□□ -0.8
LRRC28-211ENST00000558890 KCNQ2O43526 872 aa10.07□□□□□ -0.8
LRRC28-211ENST00000558890 TRIM37O94972 964 aa10.07□□□□□ -0.8
LRRC28-211ENST00000558890 TATP17735 454 aaPredicted RBP10.07□□□□□ -0.8
LRRC28-211ENST00000558890 WDR43Q15061 677 aaKnown RBP eCLIP10.07□□□□□ -0.8
LRRC28-211ENST00000558890 SAMD1Q6SPF0 538 aaPredicted RBP10.07□□□□□ -0.8
LRRC28-211ENST00000558890 DEFB132Q7Z7B7 95 aa10.07□□□□□ -0.8
LRRC28-211ENST00000558890 PROM2Q8N271 834 aa10.07□□□□□ -0.8
LRRC28-211ENST00000558890 BCL11BQ9C0K0 894 aaPredicted RBP10.07□□□□□ -0.8
LRRC28-211ENST00000558890 SULT6B1Q6IMI4 303 aa10.06□□□□□ -0.8
LRRC28-211ENST00000558890 DDX54Q8TDD1 881 aaKnown RBP10.06□□□□□ -0.8
LRRC28-211ENST00000558890 RAPGEF4Q8WZA2 1011 aa10.06□□□□□ -0.8
LRRC28-211ENST00000558890 SHANK3Q9BYB0 1731 aa10.06□□□□□ -0.8
LRRC28-211ENST00000558890 PLSCR1O15162 318 aa10.05□□□□□ -0.8
LRRC28-211ENST00000558890 ATXN8OSP0DMR3 200 aa10.05□□□□□ -0.8
LRRC28-211ENST00000558890 NEFMP07197 916 aa10.04□□□□□ -0.8
LRRC28-211ENST00000558890 EN1Q05925 392 aaPredicted RBP10.04□□□□□ -0.8
LRRC28-211ENST00000558890 AMOTQ4VCS5 1084 aa10.04□□□□□ -0.8
LRRC28-211ENST00000558890 RSPH6AQ9H0K4 717 aa10.04□□□□□ -0.8
LRRC28-211ENST00000558890 RNF123Q5XPI4 1314 aa10.04□□□□□ -0.8
LRRC28-211ENST00000558890 SBF2Q86WG5 1849 aa10.03□□□□□ -0.8
LRRC28-211ENST00000558890 U2AF1L5P0DN76 240 aaPredicted RBP10.03□□□□□ -0.8
LRRC28-211ENST00000558890 PHKG2P15735 406 aa10.03□□□□□ -0.8
LRRC28-211ENST00000558890 U2AF1Q01081 240 aaKnown RBP eCLIP10.03□□□□□ -0.8
LRRC28-211ENST00000558890 PLEKHF1Q96S99 279 aa10.03□□□□□ -0.8
LRRC28-211ENST00000558890 DLG5Q8TDM6 1919 aa10.03□□□□□ -0.8
LRRC28-211ENST00000558890 HTATSF1O43719 755 aaKnown RBP10.02□□□□□ -0.81
LRRC28-211ENST00000558890 APBA3O96018 575 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 HMOX1P09601 288 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 PRIM1P49642 420 aaKnown RBP10.02□□□□□ -0.81
LRRC28-211ENST00000558890 C1QBPQ07021 282 aaKnown RBP10.02□□□□□ -0.81
LRRC28-211ENST00000558890 EZH2Q15910 746 aaKnown RBP10.02□□□□□ -0.81
LRRC28-211ENST00000558890 GAS2L2Q8NHY3 880 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 RUNDC1Q96C34 613 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 ACSBG1Q96GR2 724 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 PHACTR3Q96KR7 559 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 SPG7Q9UQ90 795 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 VIRMAQ69YN4 1812 aaKnown RBP10.02□□□□□ -0.81
LRRC28-211ENST00000558890 PCDH11XQ9BZA7 1347 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 PCDH11YQ9BZA8 1340 aa10.02□□□□□ -0.81
LRRC28-211ENST00000558890 SCN11AQ9UI33 1791 aa10.01□□□□□ -0.81
LRRC28-211ENST00000558890 U2SURPO15042 1029 aaKnown RBP10.01□□□□□ -0.81
LRRC28-211ENST00000558890 CCDC27Q2M243 656 aa10.01□□□□□ -0.81
LRRC28-211ENST00000558890 MTHFSDQ2M296 383 aaKnown RBP10.01□□□□□ -0.81
LRRC28-211ENST00000558890 PLEKHO1Q53GL0 409 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms