RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 MCM10Q7L590 875 aa16.07■□□□□ 0.16
SHMT2-233ENST00000557529 CRB1P82279 1406 aa16.06■□□□□ 0.16
SHMT2-233ENST00000557529 KIAA0232Q92628 1395 aa16.06■□□□□ 0.16
SHMT2-233ENST00000557529 CHL1O00533 1208 aa16.06■□□□□ 0.16
SHMT2-233ENST00000557529 MS4A1P11836 297 aa16.06■□□□□ 0.16
SHMT2-233ENST00000557529 HAP1P54257 671 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-233ENST00000557529 C20orf194Q5TEA3 1177 aa16.06■□□□□ 0.16
SHMT2-233ENST00000557529 COL18A1P39060 1754 aa16.06■□□□□ 0.16
SHMT2-233ENST00000557529 PLEKHG2Q9H7P9 1386 aa16.05■□□□□ 0.16
SHMT2-233ENST00000557529 SMC4Q9NTJ3 1288 aa16.05■□□□□ 0.16
SHMT2-233ENST00000557529 LMO7Q8WWI1 1683 aa16.04■□□□□ 0.16
SHMT2-233ENST00000557529 FRAT1Q92837 279 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-233ENST00000557529 PRDM11Q9NQV5 511 aa16.04■□□□□ 0.16
SHMT2-233ENST00000557529 FAM208AQ9UK61 1670 aaKnown RBP16.04■□□□□ 0.16
SHMT2-233ENST00000557529 KIF16BQ96L93 1317 aa16.03■□□□□ 0.16
SHMT2-233ENST00000557529 ZKSCAN2Q63HK3 967 aa16.03■□□□□ 0.16
SHMT2-233ENST00000557529 SSH1Q8WYL5 1049 aa16.03■□□□□ 0.16
SHMT2-233ENST00000557529 BABAM1Q9NWV8 329 aa16.03■□□□□ 0.16
SHMT2-233ENST00000557529 AHDC1Q5TGY3 1603 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-233ENST00000557529 RGPD2P0DJD1 1756 aa16.03■□□□□ 0.16
SHMT2-233ENST00000557529 VAMP4O75379 141 aa16.02■□□□□ 0.16
SHMT2-233ENST00000557529 CSB-PGBD3P0DP91 1061 aa16.02■□□□□ 0.16
SHMT2-233ENST00000557529 BRPF1P55201 1214 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-233ENST00000557529 CHRNA2Q15822 529 aa16.02■□□□□ 0.16
SHMT2-233ENST00000557529 BCL2L13Q9BXK5 485 aa16.02■□□□□ 0.16
SHMT2-233ENST00000557529 NLRP2Q9NX02 1062 aa16.02■□□□□ 0.16
SHMT2-233ENST00000557529 ROBO1Q9Y6N7 1651 aa16.02■□□□□ 0.15
SHMT2-233ENST00000557529 IPO8O15397 1037 aaKnown RBP16.01■□□□□ 0.15
SHMT2-233ENST00000557529 TWISTNBQ3B726 338 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-233ENST00000557529 AKAP4Q5JQC9 854 aa16.01■□□□□ 0.15
SHMT2-233ENST00000557529 ZNF530Q6P9A1 599 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-233ENST00000557529 LRRC37A3O60309 1634 aa16.01■□□□□ 0.15
SHMT2-233ENST00000557529 RGPD5Q99666 1765 aa16.01■□□□□ 0.15
SHMT2-233ENST00000557529 AAMPQ13685 434 aa16■□□□□ 0.15
SHMT2-233ENST00000557529 RAPGEF4Q8WZA2 1011 aa16■□□□□ 0.15
SHMT2-233ENST00000557529 ABCA3Q99758 1704 aa16■□□□□ 0.15
SHMT2-233ENST00000557529 C1orf141Q5JVX7 400 aa16■□□□□ 0.15
SHMT2-233ENST00000557529 C8orf58Q8NAV2 365 aa16■□□□□ 0.15
SHMT2-233ENST00000557529 IL17REQ8NFR9 667 aa16■□□□□ 0.15
SHMT2-233ENST00000557529 TSPYL4Q9UJ04 414 aa16■□□□□ 0.15
SHMT2-233ENST00000557529 OVOS2A0A0G2JMS6 1433 aa15.99■□□□□ 0.15
SHMT2-233ENST00000557529 TOM1O60784 492 aa15.99■□□□□ 0.15
SHMT2-233ENST00000557529 TATP17735 454 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-233ENST00000557529 TAF7Q15545 349 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-233ENST00000557529 TSPYL6Q8N831 410 aa15.99■□□□□ 0.15
SHMT2-233ENST00000557529 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.99■□□□□ 0.15
SHMT2-233ENST00000557529 CEMIPQ8WUJ3 1361 aa15.98■□□□□ 0.15
SHMT2-233ENST00000557529 DZIP1LQ8IYY4 767 aaKnown RBP15.98■□□□□ 0.15
SHMT2-233ENST00000557529 PANK1Q8TE04 598 aa15.98■□□□□ 0.15
SHMT2-233ENST00000557529 SOS1Q07889 1333 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-233ENST00000557529 WDR17Q8IZU2 1322 aa15.97■□□□□ 0.15
SHMT2-233ENST00000557529 ATF7IPQ6VMQ6 1270 aa15.97■□□□□ 0.15
SHMT2-233ENST00000557529 FTSJ3Q8IY81 847 aaKnown RBP15.97■□□□□ 0.15
SHMT2-233ENST00000557529 MRPL50Q8N5N7 158 aaKnown RBP15.97■□□□□ 0.15
SHMT2-233ENST00000557529 NOB1Q9ULX3 412 aaKnown RBP15.97■□□□□ 0.15
SHMT2-233ENST00000557529 SPG7Q9UQ90 795 aa15.97■□□□□ 0.15
SHMT2-233ENST00000557529 ELL2O00472 640 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-233ENST00000557529 ARHGAP45Q92619 1136 aa15.96■□□□□ 0.15
SHMT2-233ENST00000557529 COG6Q9Y2V7 657 aa15.96■□□□□ 0.15
SHMT2-233ENST00000557529 COL5A2P05997 1499 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-233ENST00000557529 TRIM27P14373 513 aa15.95■□□□□ 0.14
SHMT2-233ENST00000557529 COL22A1Q8NFW1 1626 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-233ENST00000557529 RNMTO43148 476 aaKnown RBP15.94■□□□□ 0.14
SHMT2-233ENST00000557529 TEFQ10587 303 aa15.94■□□□□ 0.14
SHMT2-233ENST00000557529 MIS18AQ9NYP9 233 aa15.94■□□□□ 0.14
SHMT2-233ENST00000557529 MEGF6O75095 1541 aa15.93■□□□□ 0.14
SHMT2-233ENST00000557529 RLBP1P12271 317 aa15.93■□□□□ 0.14
SHMT2-233ENST00000557529 MVPQ14764 893 aaKnown RBP15.93■□□□□ 0.14
SHMT2-233ENST00000557529 TOM1L2Q6ZVM7 507 aa15.93■□□□□ 0.14
SHMT2-233ENST00000557529 CLUAP1Q96AJ1 413 aa15.93■□□□□ 0.14
SHMT2-233ENST00000557529 CARD10Q9BWT7 1032 aa15.92■□□□□ 0.14
SHMT2-233ENST00000557529 API5Q9BZZ5 524 aaKnown RBP15.92■□□□□ 0.14
SHMT2-233ENST00000557529 LGR6Q9HBX8 967 aa15.92■□□□□ 0.14
SHMT2-233ENST00000557529 TNNQ9UQP3 1299 aa15.92■□□□□ 0.14
SHMT2-233ENST00000557529 EVA1CP58658 441 aa15.91■□□□□ 0.14
SHMT2-233ENST00000557529 MPRIPQ6WCQ1 1025 aa15.91■□□□□ 0.14
SHMT2-233ENST00000557529 CHMP4AQ9BY43 222 aa15.91■□□□□ 0.14
SHMT2-233ENST00000557529 DDX19BQ9UMR2 479 aa15.91■□□□□ 0.14
SHMT2-233ENST00000557529 HSP90AB1P08238 724 aaKnown RBP15.9■□□□□ 0.14
SHMT2-233ENST00000557529 KRT24Q2M2I5 525 aa15.9■□□□□ 0.14
SHMT2-233ENST00000557529 AEBP2Q6ZN18 517 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-233ENST00000557529 CENPQQ7L2Z9 268 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-233ENST00000557529 IFNL2Q8IZJ0 200 aa15.9■□□□□ 0.14
SHMT2-233ENST00000557529 CHMP4BQ9H444 224 aaKnown RBP15.9■□□□□ 0.14
SHMT2-233ENST00000557529 PHLPP1O60346 1717 aa15.9■□□□□ 0.14
SHMT2-233ENST00000557529 COL16A1Q07092 1604 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-233ENST00000557529 ADAMTS7Q9UKP4 1686 aa15.9■□□□□ 0.14
SHMT2-233ENST00000557529 PHKG2P15735 406 aa15.89■□□□□ 0.13
SHMT2-233ENST00000557529 COL14A1Q05707 1796 aaKnown RBP15.89■□□□□ 0.13
SHMT2-233ENST00000557529 PKD1L3Q7Z443 1732 aa15.89■□□□□ 0.13
SHMT2-233ENST00000557529 HOXB7P09629 217 aa15.88■□□□□ 0.13
SHMT2-233ENST00000557529 STRN4Q9NRL3 753 aa15.88■□□□□ 0.13
SHMT2-233ENST00000557529 PTPRCP08575 1304 aa15.88■□□□□ 0.13
SHMT2-233ENST00000557529 BTBD11A6QL63 1104 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 UBAP1LF5GYI3 381 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 TCERG1O14776 1098 aaKnown RBP15.87■□□□□ 0.13
SHMT2-233ENST00000557529 IL2RBP14784 551 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 PIP4K2BP78356 416 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 CCDC30Q5VVM6 783 aa15.87■□□□□ 0.13
SHMT2-233ENST00000557529 ITPRIPQ8IWB1 547 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms