RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 MTFR1LQ9H019 292 aa15.41■□□□□ 0.06
CCDC88C-213ENST00000557455 PRIM1P49642 420 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-213ENST00000557455 USHBP1Q8N6Y0 703 aa15.4■□□□□ 0.06
CCDC88C-213ENST00000557455 LRRC4BQ9NT99 713 aa15.4■□□□□ 0.06
CCDC88C-213ENST00000557455 CLSPNQ9HAW4 1339 aa15.4■□□□□ 0.06
CCDC88C-213ENST00000557455 LY75O60449 1722 aa15.4■□□□□ 0.06
CCDC88C-213ENST00000557455 ZNF827Q17R98 1081 aa15.39■□□□□ 0.05
CCDC88C-213ENST00000557455 SLC27A3Q5K4L6 730 aa15.39■□□□□ 0.05
CCDC88C-213ENST00000557455 RAPGEF4Q8WZA2 1011 aa15.39■□□□□ 0.05
CCDC88C-213ENST00000557455 NSD3Q9BZ95 1437 aa15.39■□□□□ 0.05
CCDC88C-213ENST00000557455 QSER1Q2KHR3 1735 aa15.39■□□□□ 0.05
CCDC88C-213ENST00000557455 CGNL1Q0VF96 1302 aa15.39■□□□□ 0.05
CCDC88C-213ENST00000557455 INSRP06213 1382 aa15.38■□□□□ 0.05
CCDC88C-213ENST00000557455 FLT4P35916 1363 aa15.38■□□□□ 0.05
CCDC88C-213ENST00000557455 KIF24Q5T7B8 1368 aa15.38■□□□□ 0.05
CCDC88C-213ENST00000557455 YY1P25490 414 aa15.38■□□□□ 0.05
CCDC88C-213ENST00000557455 HSP90AB2PQ58FF8 381 aa15.38■□□□□ 0.05
CCDC88C-213ENST00000557455 CARD14Q9BXL6 1004 aa15.38■□□□□ 0.05
CCDC88C-213ENST00000557455 TATP17735 454 aaPredicted RBP15.37■□□□□ 0.05
CCDC88C-213ENST00000557455 MAP2P11137 1827 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-213ENST00000557455 TUBGCP6Q96RT7 1819 aa15.36■□□□□ 0.05
CCDC88C-213ENST00000557455 AKT1S1Q96B36 256 aa15.36■□□□□ 0.05
CCDC88C-213ENST00000557455 SGIP1Q9BQI5 828 aa15.36■□□□□ 0.05
CCDC88C-213ENST00000557455 FHDC1Q9C0D6 1143 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-213ENST00000557455 NSD2O96028 1365 aa15.36■□□□□ 0.05
CCDC88C-213ENST00000557455 SYT17Q9BSW7 474 aa15.35■□□□□ 0.05
CCDC88C-213ENST00000557455 EMILIN1Q9Y6C2 1016 aa15.35■□□□□ 0.05
CCDC88C-213ENST00000557455 KCNQ4P56696 695 aa15.34■□□□□ 0.05
CCDC88C-213ENST00000557455 ARXQ96QS3 562 aa15.34■□□□□ 0.05
CCDC88C-213ENST00000557455 POLR3GLQ9BT43 218 aa15.34■□□□□ 0.05
CCDC88C-213ENST00000557455 TFCP2L1Q9NZI6 479 aa15.34■□□□□ 0.05
CCDC88C-213ENST00000557455 PCDH11XQ9BZA7 1347 aa15.34■□□□□ 0.05
CCDC88C-213ENST00000557455 PCDH11YQ9BZA8 1340 aa15.34■□□□□ 0.05
CCDC88C-213ENST00000557455 ANKRD26Q9UPS8 1709 aa15.34■□□□□ 0.05
CCDC88C-213ENST00000557455 PPM1GO15355 546 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-213ENST00000557455 SLC16A10Q8TF71 515 aa15.33■□□□□ 0.04
CCDC88C-213ENST00000557455 CCNL1Q9UK58 526 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-213ENST00000557455 ITGB4P16144 1822 aa15.32■□□□□ 0.04
CCDC88C-213ENST00000557455 PNPLA7Q6ZV29 1317 aa15.32■□□□□ 0.04
CCDC88C-213ENST00000557455 UTRNP46939 3433 aa15.32■□□□□ 0.04
CCDC88C-213ENST00000557455 COL24A1Q17RW2 1714 aa15.31■□□□□ 0.04
CCDC88C-213ENST00000557455 PKD1L3Q7Z443 1732 aa15.31■□□□□ 0.04
CCDC88C-213ENST00000557455 C5P01031 1676 aa15.3■□□□□ 0.04
CCDC88C-213ENST00000557455 POLD1P28340 1107 aa15.3■□□□□ 0.04
CCDC88C-213ENST00000557455 WASHC2AQ641Q2 1341 aa15.3■□□□□ 0.04
CCDC88C-213ENST00000557455 CHD4Q14839 1912 aa15.29■□□□□ 0.04
CCDC88C-213ENST00000557455 CYP27B1O15528 508 aa15.29■□□□□ 0.04
CCDC88C-213ENST00000557455 EIF4G2P78344 907 aaKnown RBP eCLIP15.29■□□□□ 0.04
CCDC88C-213ENST00000557455 MPRIPQ6WCQ1 1025 aa15.29■□□□□ 0.04
CCDC88C-213ENST00000557455 TAF1LQ8IZX4 1826 aa15.29■□□□□ 0.04
CCDC88C-213ENST00000557455 TOGARAM1Q9Y4F4 1720 aa15.29■□□□□ 0.04
CCDC88C-213ENST00000557455 MAP3K5Q99683 1374 aa15.28■□□□□ 0.04
CCDC88C-213ENST00000557455 NCAPD2Q15021 1401 aa15.27■□□□□ 0.04
CCDC88C-213ENST00000557455 MSH5O43196 834 aa15.27■□□□□ 0.04
CCDC88C-213ENST00000557455 KLHL34Q8N239 644 aa15.27■□□□□ 0.04
CCDC88C-213ENST00000557455 POLKQ9UBT6 870 aa15.27■□□□□ 0.04
CCDC88C-213ENST00000557455 SPG7Q9UQ90 795 aa15.27■□□□□ 0.04
CCDC88C-213ENST00000557455 HSPA5P11021 654 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-213ENST00000557455 HMGB2P26583 209 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-213ENST00000557455 TNNT2P45379 298 aaPredicted RBP15.26■□□□□ 0.03
CCDC88C-213ENST00000557455 CCER1Q8TC90 406 aaPredicted RBP15.26■□□□□ 0.03
CCDC88C-213ENST00000557455 EYA1Q99502 592 aa15.26■□□□□ 0.03
CCDC88C-213ENST00000557455 PALLDQ8WX93 1383 aa15.25■□□□□ 0.03
CCDC88C-213ENST00000557455 COL23A1Q86Y22 540 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-213ENST00000557455 SMARCC1Q92922 1105 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-213ENST00000557455 NKX1-1Q15270 411 aaPredicted RBP15.23■□□□□ 0.03
CCDC88C-213ENST00000557455 PANK3Q9H999 370 aa15.23■□□□□ 0.03
CCDC88C-213ENST00000557455 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.23■□□□□ 0.03
CCDC88C-213ENST00000557455 C4BP0C0L5 1744 aa15.23■□□□□ 0.03
CCDC88C-213ENST00000557455 EIF4A2Q14240 407 aaKnown RBP15.22■□□□□ 0.03
CCDC88C-213ENST00000557455 GPR162Q16538 588 aa15.22■□□□□ 0.03
CCDC88C-213ENST00000557455 PIGBQ92521 554 aa15.22■□□□□ 0.03
CCDC88C-213ENST00000557455 IFNL2Q8IZJ0 200 aa15.21■□□□□ 0.03
CCDC88C-213ENST00000557455 FLAD1Q8NFF5 587 aa15.21■□□□□ 0.03
CCDC88C-213ENST00000557455 UBR3Q6ZT12 1888 aa15.2■□□□□ 0.02
CCDC88C-213ENST00000557455 AK7Q96M32 723 aa15.2■□□□□ 0.02
CCDC88C-213ENST00000557455 TMOD3Q9NYL9 352 aa15.2■□□□□ 0.02
CCDC88C-213ENST00000557455 PHKG2P15735 406 aa15.19■□□□□ 0.02
CCDC88C-213ENST00000557455 MSL1Q68DK7 614 aa15.19■□□□□ 0.02
CCDC88C-213ENST00000557455 PELP1Q8IZL8 1130 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-213ENST00000557455 ZNF784Q8NCA9 323 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-213ENST00000557455 NLGN2Q8NFZ4 835 aa15.18■□□□□ 0.02
CCDC88C-213ENST00000557455 GOLGB1Q14789 3259 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-213ENST00000557455 IGSF1Q8N6C5 1336 aa15.17■□□□□ 0.02
CCDC88C-213ENST00000557455 PLEKHG2Q9H7P9 1386 aa15.17■□□□□ 0.02
CCDC88C-213ENST00000557455 LOC102724428A0A0B4J2F2 783 aa15.17■□□□□ 0.02
CCDC88C-213ENST00000557455 SIK1P57059 783 aa15.17■□□□□ 0.02
CCDC88C-213ENST00000557455 MORC1Q86VD1 984 aa15.17■□□□□ 0.02
CCDC88C-213ENST00000557455 ASAP1Q9ULH1 1129 aa15.16■□□□□ 0.02
CCDC88C-213ENST00000557455 PHF14O94880 888 aa15.15■□□□□ 0.02
CCDC88C-213ENST00000557455 LINC00116Q8NCU8 138 aa15.15■□□□□ 0.02
CCDC88C-213ENST00000557455 KNSTRNQ9Y448 316 aa15.15■□□□□ 0.02
CCDC88C-213ENST00000557455 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-213ENST00000557455 HSP90AB1P08238 724 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-213ENST00000557455 ATP6V1AP38606 617 aa15.14■□□□□ 0.01
CCDC88C-213ENST00000557455 PLEKHO1Q53GL0 409 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-213ENST00000557455 ERVV-2B6SEH9 535 aa15.13■□□□□ 0.01
CCDC88C-213ENST00000557455 SSFA2P28290 1259 aa15.13■□□□□ 0.01
CCDC88C-213ENST00000557455 AMIGO3Q86WK7 504 aa15.13■□□□□ 0.01
CCDC88C-213ENST00000557455 ATG3Q9NT62 314 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms