RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 EMILIN1Q9Y6C2 1016 aa15.24■□□□□ 0.03
SYNE2-227ENST00000557307 SLC24A1O60721 1099 aa15.23■□□□□ 0.03
SYNE2-227ENST00000557307 TIMELESSQ9UNS1 1208 aa15.23■□□□□ 0.03
SYNE2-227ENST00000557307 TAF1LQ8IZX4 1826 aa15.22■□□□□ 0.03
SYNE2-227ENST00000557307 HSPA5P11021 654 aaKnown RBP15.22■□□□□ 0.03
SYNE2-227ENST00000557307 ZNF827Q17R98 1081 aa15.22■□□□□ 0.03
SYNE2-227ENST00000557307 POLR3GLQ9BT43 218 aa15.22■□□□□ 0.03
SYNE2-227ENST00000557307 LRRC4BQ9NT99 713 aa15.22■□□□□ 0.03
SYNE2-227ENST00000557307 COL24A1Q17RW2 1714 aa15.22■□□□□ 0.03
SYNE2-227ENST00000557307 INSRP06213 1382 aa15.22■□□□□ 0.03
SYNE2-227ENST00000557307 FLT4P35916 1363 aa15.22■□□□□ 0.03
SYNE2-227ENST00000557307 ZBTB7AO95365 584 aa15.21■□□□□ 0.03
SYNE2-227ENST00000557307 C5P01031 1676 aa15.21■□□□□ 0.03
SYNE2-227ENST00000557307 NCAPD2Q15021 1401 aa15.2■□□□□ 0.02
SYNE2-227ENST00000557307 KCNQ4P56696 695 aa15.2■□□□□ 0.02
SYNE2-227ENST00000557307 SLC15A2Q16348 729 aa15.2■□□□□ 0.02
SYNE2-227ENST00000557307 CDCA8Q53HL2 280 aa15.2■□□□□ 0.02
SYNE2-227ENST00000557307 CCER1Q8TC90 406 aaPredicted RBP15.19■□□□□ 0.02
SYNE2-227ENST00000557307 SMG6Q86US8 1419 aaKnown RBP15.18■□□□□ 0.02
SYNE2-227ENST00000557307 PTGER2P43116 358 aa15.18■□□□□ 0.02
SYNE2-227ENST00000557307 ZCRB1Q8TBF4 217 aaKnown RBP15.18■□□□□ 0.02
SYNE2-227ENST00000557307 SPON1Q9HCB6 807 aa15.18■□□□□ 0.02
SYNE2-227ENST00000557307 PRIM1P49642 420 aaKnown RBP15.17■□□□□ 0.02
SYNE2-227ENST00000557307 STK32BQ9NY57 414 aa15.17■□□□□ 0.02
SYNE2-227ENST00000557307 ATF5Q9Y2D1 282 aaPredicted RBP15.17■□□□□ 0.02
SYNE2-227ENST00000557307 KIF24Q5T7B8 1368 aa15.16■□□□□ 0.02
SYNE2-227ENST00000557307 SYTL4Q96C24 671 aaPredicted RBP15.16■□□□□ 0.02
SYNE2-227ENST00000557307 PPM1GO15355 546 aaPredicted RBP15.14■□□□□ 0.01
SYNE2-227ENST00000557307 TNNT2P45379 298 aaPredicted RBP15.14■□□□□ 0.01
SYNE2-227ENST00000557307 EIF4G2P78344 907 aaKnown RBP eCLIP15.14■□□□□ 0.01
SYNE2-227ENST00000557307 SGIP1Q9BQI5 828 aa15.14■□□□□ 0.01
SYNE2-227ENST00000557307 POLKQ9UBT6 870 aa15.14■□□□□ 0.01
SYNE2-227ENST00000557307 CYP27B1O15528 508 aa15.13■□□□□ 0.01
SYNE2-227ENST00000557307 AKT1S1Q96B36 256 aa15.13■□□□□ 0.01
SYNE2-227ENST00000557307 PPP1R1BQ9UD71 204 aaPredicted RBP15.13■□□□□ 0.01
SYNE2-227ENST00000557307 UTRNP46939 3433 aa15.13■□□□□ 0.01
SYNE2-227ENST00000557307 CGNL1Q0VF96 1302 aa15.13■□□□□ 0.01
SYNE2-227ENST00000557307 TATP17735 454 aaPredicted RBP15.12■□□□□ 0.01
SYNE2-227ENST00000557307 RAPGEF4Q8WZA2 1011 aa15.12■□□□□ 0.01
SYNE2-227ENST00000557307 PANK3Q9H999 370 aa15.12■□□□□ 0.01
SYNE2-227ENST00000557307 VIRMAQ69YN4 1812 aaKnown RBP15.12■□□□□ 0.01
SYNE2-227ENST00000557307 UBR3Q6ZT12 1888 aa15.12■□□□□ 0.01
SYNE2-227ENST00000557307 EYA1Q99502 592 aa15.11■□□□□ 0.01
SYNE2-227ENST00000557307 C4BP0C0L5 1744 aa15.11■□□□□ 0.01
SYNE2-227ENST00000557307 WASHC2AQ641Q2 1341 aa15.11■□□□□ 0.01
SYNE2-227ENST00000557307 PNPLA7Q6ZV29 1317 aa15.11■□□□□ 0.01
SYNE2-227ENST00000557307 PCDH11XQ9BZA7 1347 aa15.1■□□□□ 0.01
SYNE2-227ENST00000557307 PCDH11YQ9BZA8 1340 aa15.1■□□□□ 0.01
SYNE2-227ENST00000557307 EIF4A2Q14240 407 aaKnown RBP15.09■□□□□ 0.01
SYNE2-227ENST00000557307 MTFR1LQ9H019 292 aa15.09■□□□□ 0.01
SYNE2-227ENST00000557307 SLC27A3Q5K4L6 730 aa15.07■□□□□ 0
SYNE2-227ENST00000557307 FHDC1Q9C0D6 1143 aaPredicted RBP15.07■□□□□ 0
SYNE2-227ENST00000557307 CCNL1Q9UK58 526 aaPredicted RBP15.07■□□□□ 0
SYNE2-227ENST00000557307 AMIGO3Q86WK7 504 aa15.06■□□□□ 0
SYNE2-227ENST00000557307 KIF7Q2M1P5 1343 aa15.06■□□□□ 0
SYNE2-227ENST00000557307 PALLDQ8WX93 1383 aa15.06■□□□□ 0
SYNE2-227ENST00000557307 GOLGB1Q14789 3259 aaKnown RBP15.05■□□□□ -0
SYNE2-227ENST00000557307 MPRIPQ6WCQ1 1025 aa15.05■□□□□ -0
SYNE2-227ENST00000557307 SMIM5Q71RC9 77 aa15.05■□□□□ -0
SYNE2-227ENST00000557307 COL5A3P25940 1745 aaPredicted RBP15.05■□□□□ -0
SYNE2-227ENST00000557307 IGSF1Q8N6C5 1336 aa15.04■□□□□ -0
SYNE2-227ENST00000557307 SYT17Q9BSW7 474 aa15.04■□□□□ -0
SYNE2-227ENST00000557307 CHD4Q14839 1912 aa15.04■□□□□ -0
SYNE2-227ENST00000557307 PIGBQ92521 554 aa15.03■□□□□ -0
SYNE2-227ENST00000557307 SCN11AQ9UI33 1791 aa15.03■□□□□ -0
SYNE2-227ENST00000557307 KDM6AO15550 1401 aaPredicted RBP15.02■□□□□ -0
SYNE2-227ENST00000557307 NKX1-1Q15270 411 aaPredicted RBP15.02■□□□□ -0
SYNE2-227ENST00000557307 COL23A1Q86Y22 540 aaPredicted RBP15.02■□□□□ -0
SYNE2-227ENST00000557307 AEBP1Q8IUX7 1158 aa15.02■□□□□ -0
SYNE2-227ENST00000557307 ARXQ96QS3 562 aa15.02■□□□□ -0
SYNE2-227ENST00000557307 TFCP2L1Q9NZI6 479 aa15.02■□□□□ -0
SYNE2-227ENST00000557307 TJP1Q07157 1748 aa15.01□□□□□ -0.01
SYNE2-227ENST00000557307 PHKG2P15735 406 aa15.01□□□□□ -0.01
SYNE2-227ENST00000557307 C4AP0C0L4 1744 aa15□□□□□ -0.01
SYNE2-227ENST00000557307 AMER1Q5JTC6 1135 aaPredicted RBP15□□□□□ -0.01
SYNE2-227ENST00000557307 MSL1Q68DK7 614 aa15□□□□□ -0.01
SYNE2-227ENST00000557307 ZNF831Q5JPB2 1677 aa15□□□□□ -0.01
SYNE2-227ENST00000557307 MORC1Q86VD1 984 aa14.99□□□□□ -0.01
SYNE2-227ENST00000557307 SPG7Q9UQ90 795 aa14.99□□□□□ -0.01
SYNE2-227ENST00000557307 MAP3K5Q99683 1374 aa14.98□□□□□ -0.01
SYNE2-227ENST00000557307 MYH14Q7Z406 1995 aaKnown RBP14.98□□□□□ -0.01
SYNE2-227ENST00000557307 YY1P25490 414 aa14.98□□□□□ -0.01
SYNE2-227ENST00000557307 KLHL34Q8N239 644 aa14.98□□□□□ -0.01
SYNE2-227ENST00000557307 LINC00116Q8NCU8 138 aa14.98□□□□□ -0.01
SYNE2-227ENST00000557307 NLGN2Q8NFZ4 835 aa14.98□□□□□ -0.01
SYNE2-227ENST00000557307 ASAP1Q9ULH1 1129 aa14.98□□□□□ -0.01
SYNE2-227ENST00000557307 KDRP35968 1356 aa14.98□□□□□ -0.01
SYNE2-227ENST00000557307 ITPK1Q13572 414 aa14.97□□□□□ -0.01
SYNE2-227ENST00000557307 KIAA1551Q9HCM1 1747 aa14.97□□□□□ -0.01
SYNE2-227ENST00000557307 COL3A1P02461 1466 aaPredicted RBP14.96□□□□□ -0.01
SYNE2-227ENST00000557307 PER1O15534 1290 aaPredicted RBP14.96□□□□□ -0.01
SYNE2-227ENST00000557307 MSH5O43196 834 aa14.96□□□□□ -0.01
SYNE2-227ENST00000557307 IFNL2Q8IZJ0 200 aa14.96□□□□□ -0.01
SYNE2-227ENST00000557307 SLC16A10Q8TF71 515 aa14.96□□□□□ -0.01
SYNE2-227ENST00000557307 SLC4A9Q96Q91 983 aa14.96□□□□□ -0.01
SYNE2-227ENST00000557307 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.96□□□□□ -0.01
SYNE2-227ENST00000557307 ADAMTS7Q9UKP4 1686 aa14.96□□□□□ -0.01
SYNE2-227ENST00000557307 CICQ96RK0 1608 aaPredicted RBP14.95□□□□□ -0.02
SYNE2-227ENST00000557307 IL13P35225 146 aa14.95□□□□□ -0.02
SYNE2-227ENST00000557307 ATG3Q9NT62 314 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms