RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 KAT6BQ8WYB5 2073 aa23.53■■□□□ 1.36
SHMT2-225ENST00000556798 MYBBP1AQ9BQG0 1328 aaKnown RBP23.53■■□□□ 1.36
SHMT2-225ENST00000556798 MARCH10Q8NA82 808 aaPredicted RBP23.52■■□□□ 1.36
SHMT2-225ENST00000556798 TNS1Q9HBL0 1735 aaKnown RBP23.51■■□□□ 1.35
SHMT2-225ENST00000556798 SULT6B1Q6IMI4 303 aa23.51■■□□□ 1.35
SHMT2-225ENST00000556798 U2SURPO15042 1029 aaKnown RBP23.5■■□□□ 1.35
SHMT2-225ENST00000556798 KDRP35968 1356 aa23.5■■□□□ 1.35
SHMT2-225ENST00000556798 HMOX1P09601 288 aa23.49■■□□□ 1.35
SHMT2-225ENST00000556798 ZCRB1Q8TBF4 217 aaKnown RBP23.49■■□□□ 1.35
SHMT2-225ENST00000556798 UPF1Q92900 1129 aaKnown RBP eCLIP23.49■■□□□ 1.35
SHMT2-225ENST00000556798 DOT1LQ8TEK3 1739 aa23.49■■□□□ 1.35
SHMT2-225ENST00000556798 DDX54Q8TDD1 881 aaKnown RBP23.48■■□□□ 1.35
SHMT2-225ENST00000556798 FAM196AQ6ZSG2 479 aa23.47■■□□□ 1.35
SHMT2-225ENST00000556798 NHSQ6T4R5 1651 aa23.45■■□□□ 1.34
SHMT2-225ENST00000556798 PCDH11XQ9BZA7 1347 aa23.44■■□□□ 1.34
SHMT2-225ENST00000556798 PCDH11YQ9BZA8 1340 aa23.44■■□□□ 1.34
SHMT2-225ENST00000556798 VIRMAQ69YN4 1812 aaKnown RBP23.44■■□□□ 1.34
SHMT2-225ENST00000556798 TOGARAM1Q9Y4F4 1720 aa23.44■■□□□ 1.34
SHMT2-225ENST00000556798 ANP32CO43423 234 aa23.43■■□□□ 1.34
SHMT2-225ENST00000556798 NUDCQ9Y266 331 aa23.43■■□□□ 1.34
SHMT2-225ENST00000556798 TRIM37O94972 964 aa23.42■■□□□ 1.34
SHMT2-225ENST00000556798 SPG7Q9UQ90 795 aa23.42■■□□□ 1.34
SHMT2-225ENST00000556798 BCL9O00512 1426 aa23.42■■□□□ 1.34
SHMT2-225ENST00000556798 CYP27B1O15528 508 aa23.41■■□□□ 1.34
SHMT2-225ENST00000556798 U2AF1L5P0DN76 240 aaPredicted RBP23.41■■□□□ 1.34
SHMT2-225ENST00000556798 U2AF1Q01081 240 aaKnown RBP eCLIP23.41■■□□□ 1.34
SHMT2-225ENST00000556798 PLEKHG2Q9H7P9 1386 aa23.4■■□□□ 1.34
SHMT2-225ENST00000556798 ITGB4P16144 1822 aa23.4■■□□□ 1.34
SHMT2-225ENST00000556798 BTAF1O14981 1849 aa23.4■■□□□ 1.34
SHMT2-225ENST00000556798 ACSBG1Q96GR2 724 aa23.39■■□□□ 1.33
SHMT2-225ENST00000556798 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.39■■□□□ 1.33
SHMT2-225ENST00000556798 PLEKHO1Q53GL0 409 aaPredicted RBP23.38■■□□□ 1.33
SHMT2-225ENST00000556798 PTF1AQ7RTS3 328 aa23.38■■□□□ 1.33
SHMT2-225ENST00000556798 RSPH6AQ9H0K4 717 aa23.37■■□□□ 1.33
SHMT2-225ENST00000556798 ZNF530Q6P9A1 599 aaPredicted RBP23.36■■□□□ 1.33
SHMT2-225ENST00000556798 KCNQ2O43526 872 aa23.35■■□□□ 1.33
SHMT2-225ENST00000556798 PHKG2P15735 406 aa23.35■■□□□ 1.33
SHMT2-225ENST00000556798 PRKAR2BP31323 418 aa23.35■■□□□ 1.33
SHMT2-225ENST00000556798 SF3B2Q13435 895 aaKnown RBP23.35■■□□□ 1.33
SHMT2-225ENST00000556798 AMOTQ4VCS5 1084 aa23.35■■□□□ 1.33
SHMT2-225ENST00000556798 CCDC125Q86Z20 511 aa23.35■■□□□ 1.33
SHMT2-225ENST00000556798 SCN11AQ9UI33 1791 aa23.35■■□□□ 1.33
SHMT2-225ENST00000556798 CCDC184Q52MB2 194 aa23.34■■□□□ 1.33
SHMT2-225ENST00000556798 IFNL2Q8IZJ0 200 aa23.34■■□□□ 1.33
SHMT2-225ENST00000556798 DEFB132Q7Z7B7 95 aa23.33■■□□□ 1.33
SHMT2-225ENST00000556798 DLG5Q8TDM6 1919 aa23.33■■□□□ 1.32
SHMT2-225ENST00000556798 SYTL4Q96C24 671 aaPredicted RBP23.32■■□□□ 1.32
SHMT2-225ENST00000556798 MTHFSDQ2M296 383 aaKnown RBP23.31■■□□□ 1.32
SHMT2-225ENST00000556798 PHACTR3Q96KR7 559 aa23.31■■□□□ 1.32
SHMT2-225ENST00000556798 BCL11BQ9C0K0 894 aaPredicted RBP23.31■■□□□ 1.32
SHMT2-225ENST00000556798 RGPD3A6NKT7 1758 aaPredicted RBP23.31■■□□□ 1.32
SHMT2-225ENST00000556798 RGPD4Q7Z3J3 1758 aa23.31■■□□□ 1.32
SHMT2-225ENST00000556798 FCHSD2O94868 740 aa23.3■■□□□ 1.32
SHMT2-225ENST00000556798 APBA3O96018 575 aa23.3■■□□□ 1.32
SHMT2-225ENST00000556798 PRIM1P49642 420 aaKnown RBP23.3■■□□□ 1.32
SHMT2-225ENST00000556798 NKX1-1Q15270 411 aaPredicted RBP23.3■■□□□ 1.32
SHMT2-225ENST00000556798 C1orf141Q5JVX7 400 aa23.3■■□□□ 1.32
SHMT2-225ENST00000556798 KDM6AO15550 1401 aaPredicted RBP23.3■■□□□ 1.32
SHMT2-225ENST00000556798 RREB1Q92766 1687 aa23.28■■□□□ 1.32
SHMT2-225ENST00000556798 BAG6P46379 1132 aa23.28■■□□□ 1.32
SHMT2-225ENST00000556798 EN1Q05925 392 aaPredicted RBP23.28■■□□□ 1.32
SHMT2-225ENST00000556798 WDR43Q15061 677 aaKnown RBP eCLIP23.28■■□□□ 1.32
SHMT2-225ENST00000556798 ADAMTS7Q9UKP4 1686 aa23.27■■□□□ 1.32
SHMT2-225ENST00000556798 AKAP4Q5JQC9 854 aa23.26■■□□□ 1.31
SHMT2-225ENST00000556798 MPRIPQ6WCQ1 1025 aa23.26■■□□□ 1.31
SHMT2-225ENST00000556798 NUP188Q5SRE5 1749 aa23.25■■□□□ 1.31
SHMT2-225ENST00000556798 HSP90AB1P08238 724 aaKnown RBP23.25■■□□□ 1.31
SHMT2-225ENST00000556798 GAS2L2Q8NHY3 880 aa23.25■■□□□ 1.31
SHMT2-225ENST00000556798 MRS2Q9HD23 443 aa23.25■■□□□ 1.31
SHMT2-225ENST00000556798 LY75O60449 1722 aa23.25■■□□□ 1.31
SHMT2-225ENST00000556798 DCAF5Q96JK2 942 aa23.24■■□□□ 1.31
SHMT2-225ENST00000556798 PLEKHF1Q96S99 279 aa23.24■■□□□ 1.31
SHMT2-225ENST00000556798 MAP3K5Q99683 1374 aa23.24■■□□□ 1.31
SHMT2-225ENST00000556798 EZH2Q15910 746 aaKnown RBP23.23■■□□□ 1.31
SHMT2-225ENST00000556798 DIEXFQ68CQ4 756 aaKnown RBP23.23■■□□□ 1.31
SHMT2-225ENST00000556798 ADAMTS8Q9UP79 889 aa23.23■■□□□ 1.31
SHMT2-225ENST00000556798 CCDC146Q8IYE0 955 aa23.22■■□□□ 1.31
SHMT2-225ENST00000556798 NEFMP07197 916 aa23.21■■□□□ 1.31
SHMT2-225ENST00000556798 CAMKK2Q96RR4 588 aa23.21■■□□□ 1.31
SHMT2-225ENST00000556798 MAPK8IP3Q9UPT6 1336 aa23.21■■□□□ 1.31
SHMT2-225ENST00000556798 SIPA1L3O60292 1781 aaPredicted RBP23.21■■□□□ 1.31
SHMT2-225ENST00000556798 PNNQ9H307 717 aaKnown RBP23.2■■□□□ 1.3
SHMT2-225ENST00000556798 LGR6Q9HBX8 967 aa23.2■■□□□ 1.3
SHMT2-225ENST00000556798 TMOD3Q9NYL9 352 aa23.2■■□□□ 1.3
SHMT2-225ENST00000556798 MRC1P22897 1456 aa23.19■■□□□ 1.3
SHMT2-225ENST00000556798 PIGBQ92521 554 aa23.19■■□□□ 1.3
SHMT2-225ENST00000556798 GNAT3A8MTJ3 354 aa23.18■■□□□ 1.3
SHMT2-225ENST00000556798 ERVV-2B6SEH9 535 aa23.18■■□□□ 1.3
SHMT2-225ENST00000556798 PLSCR1O15162 318 aa23.18■■□□□ 1.3
SHMT2-225ENST00000556798 RNMTO43148 476 aaKnown RBP23.18■■□□□ 1.3
SHMT2-225ENST00000556798 CABP4P57796 275 aa23.17■■□□□ 1.3
SHMT2-225ENST00000556798 PAPPAQ13219 1627 aa23.16■■□□□ 1.3
SHMT2-225ENST00000556798 PNISRQ8TF01 805 aaKnown RBP23.16■■□□□ 1.3
SHMT2-225ENST00000556798 NFE2L2Q16236 605 aa23.15■■□□□ 1.3
SHMT2-225ENST00000556798 TXNRD1Q16881 649 aa23.14■■□□□ 1.29
SHMT2-225ENST00000556798 PROM2Q8N271 834 aa23.14■■□□□ 1.29
SHMT2-225ENST00000556798 NFATC2IPQ8NCF5 419 aa23.14■■□□□ 1.29
SHMT2-225ENST00000556798 IL17REQ8NFR9 667 aa23.14■■□□□ 1.29
SHMT2-225ENST00000556798 RUNDC1Q96C34 613 aa23.14■■□□□ 1.29
SHMT2-225ENST00000556798 TAF1LQ8IZX4 1826 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms