RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 TULP1O00294 542 aaPredicted RBP10.1□□□□□ -0.79
SCFD1-222ENST00000556768 CAMKK2Q96RR4 588 aa10.1□□□□□ -0.79
SCFD1-222ENST00000556768 RNF25Q96BH1 459 aaPredicted RBP10.1□□□□□ -0.79
SCFD1-222ENST00000556768 LMO7Q8WWI1 1683 aa10.09□□□□□ -0.79
SCFD1-222ENST00000556768 CGNL1Q0VF96 1302 aa10.09□□□□□ -0.79
SCFD1-222ENST00000556768 MAP3K19Q56UN5 1328 aa10.09□□□□□ -0.79
SCFD1-222ENST00000556768 DISP2A7MBM2 1401 aa10.09□□□□□ -0.79
SCFD1-222ENST00000556768 PSDA5PKW4 1024 aaPredicted RBP10.09□□□□□ -0.79
SCFD1-222ENST00000556768 HOXC9P31274 260 aa10.09□□□□□ -0.79
SCFD1-222ENST00000556768 MARCH10Q8NA82 808 aaPredicted RBP10.09□□□□□ -0.79
SCFD1-222ENST00000556768 THSD7AQ9UPZ6 1657 aa10.09□□□□□ -0.79
SCFD1-222ENST00000556768 PLSCR1O15162 318 aa10.08□□□□□ -0.8
SCFD1-222ENST00000556768 R3HDM1Q15032 1099 aaKnown RBP10.08□□□□□ -0.8
SCFD1-222ENST00000556768 RRS1Q15050 365 aaKnown RBP10.08□□□□□ -0.8
SCFD1-222ENST00000556768 NFAT5O94916 1531 aa10.08□□□□□ -0.8
SCFD1-222ENST00000556768 ABCC6O95255 1503 aa10.08□□□□□ -0.8
SCFD1-222ENST00000556768 HSPA5P11021 654 aaKnown RBP10.07□□□□□ -0.8
SCFD1-222ENST00000556768 GTF3C3Q9Y5Q9 886 aa10.07□□□□□ -0.8
SCFD1-222ENST00000556768 BRWD3Q6RI45 1802 aa10.07□□□□□ -0.8
SCFD1-222ENST00000556768 PPM1GO15355 546 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-222ENST00000556768 FBLN1P23142 703 aa10.07□□□□□ -0.8
SCFD1-222ENST00000556768 NKX1-1Q15270 411 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-222ENST00000556768 DDX54Q8TDD1 881 aaKnown RBP10.07□□□□□ -0.8
SCFD1-222ENST00000556768 SMG6Q86US8 1419 aaKnown RBP10.06□□□□□ -0.8
SCFD1-222ENST00000556768 AKAP12Q02952 1782 aa10.06□□□□□ -0.8
SCFD1-222ENST00000556768 RAPGEF4Q8WZA2 1011 aa10.06□□□□□ -0.8
SCFD1-222ENST00000556768 CARD14Q9BXL6 1004 aa10.06□□□□□ -0.8
SCFD1-222ENST00000556768 RTL1A6NKG5 1358 aa10.05□□□□□ -0.8
SCFD1-222ENST00000556768 BCL9O00512 1426 aa10.05□□□□□ -0.8
SCFD1-222ENST00000556768 MON2Q7Z3U7 1717 aa10.04□□□□□ -0.8
SCFD1-222ENST00000556768 KIF24Q5T7B8 1368 aa10.04□□□□□ -0.8
SCFD1-222ENST00000556768 DSG3P32926 999 aa10.04□□□□□ -0.8
SCFD1-222ENST00000556768 ZCRB1Q8TBF4 217 aaKnown RBP10.04□□□□□ -0.8
SCFD1-222ENST00000556768 ACSBG1Q96GR2 724 aa10.04□□□□□ -0.8
SCFD1-222ENST00000556768 PANK3Q9H999 370 aa10.04□□□□□ -0.8
SCFD1-222ENST00000556768 NSD3Q9BZ95 1437 aa10.04□□□□□ -0.8
SCFD1-222ENST00000556768 GTPBP6O43824 516 aaPredicted RBP10.03□□□□□ -0.8
SCFD1-222ENST00000556768 HSP90AB2PQ58FF8 381 aa10.03□□□□□ -0.8
SCFD1-222ENST00000556768 KNSTRNQ9Y448 316 aa10.03□□□□□ -0.8
SCFD1-222ENST00000556768 FLT4P35916 1363 aa10.03□□□□□ -0.8
SCFD1-222ENST00000556768 TNS2Q63HR2 1409 aa10.03□□□□□ -0.8
SCFD1-222ENST00000556768 TATP17735 454 aaPredicted RBP10.03□□□□□ -0.8
SCFD1-222ENST00000556768 NBPF6Q5VWK0 638 aa10.03□□□□□ -0.8
SCFD1-222ENST00000556768 SYTL4Q96C24 671 aaPredicted RBP10.03□□□□□ -0.8
SCFD1-222ENST00000556768 NBPF4Q96M43 638 aa10.03□□□□□ -0.8
SCFD1-222ENST00000556768 INSRP06213 1382 aa10.02□□□□□ -0.81
SCFD1-222ENST00000556768 KCNQ2O43526 872 aa10.02□□□□□ -0.81
SCFD1-222ENST00000556768 TNNT2P45379 298 aaPredicted RBP10.02□□□□□ -0.81
SCFD1-222ENST00000556768 GSE1Q14687 1217 aa10.02□□□□□ -0.81
SCFD1-222ENST00000556768 TXNRD1Q16881 649 aa10.02□□□□□ -0.81
SCFD1-222ENST00000556768 COL18A1P39060 1754 aa10.02□□□□□ -0.81
SCFD1-222ENST00000556768 RGPD1P0DJD0 1748 aa10.01□□□□□ -0.81
SCFD1-222ENST00000556768 HMGB2P26583 209 aaKnown RBP10.01□□□□□ -0.81
SCFD1-222ENST00000556768 STK32BQ9NY57 414 aa10.01□□□□□ -0.81
SCFD1-222ENST00000556768 EMILIN1Q9Y6C2 1016 aa10.01□□□□□ -0.81
SCFD1-222ENST00000556768 PARP4Q9UKK3 1724 aaKnown RBP10.01□□□□□ -0.81
SCFD1-222ENST00000556768 PTF1AQ7RTS3 328 aa10□□□□□ -0.81
SCFD1-222ENST00000556768 PPP1R1BQ9UD71 204 aaPredicted RBP10□□□□□ -0.81
SCFD1-222ENST00000556768 MORC1Q86VD1 984 aa10□□□□□ -0.81
SCFD1-222ENST00000556768 USHBP1Q8N6Y0 703 aa10□□□□□ -0.81
SCFD1-222ENST00000556768 SPON1Q9HCB6 807 aa10□□□□□ -0.81
SCFD1-222ENST00000556768 WASHC2AQ641Q2 1341 aa10□□□□□ -0.81
SCFD1-222ENST00000556768 PRIM1P49642 420 aaKnown RBP9.99□□□□□ -0.81
SCFD1-222ENST00000556768 ERICH6Q7L0X2 663 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 POLKQ9UBT6 870 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 SPG7Q9UQ90 795 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 USP54Q70EL1 1684 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 RIOK3O14730 519 aaKnown RBP9.98□□□□□ -0.81
SCFD1-222ENST00000556768 NSD2O96028 1365 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 SLC15A2Q16348 729 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 SLC27A3Q5K4L6 730 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 PCDH11XQ9BZA7 1347 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 PCDH11YQ9BZA8 1340 aa9.98□□□□□ -0.81
SCFD1-222ENST00000556768 LRRC37A3O60309 1634 aa9.97□□□□□ -0.81
SCFD1-222ENST00000556768 NUBP1P53384 320 aa9.96□□□□□ -0.82
SCFD1-222ENST00000556768 TMEM132AQ24JP5 1023 aa9.96□□□□□ -0.82
SCFD1-222ENST00000556768 EYA1Q99502 592 aa9.96□□□□□ -0.82
SCFD1-222ENST00000556768 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.96□□□□□ -0.822e-8■■■□□ 14.9
SCFD1-222ENST00000556768 ANO8Q9HCE9 1232 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-222ENST00000556768 LTN1O94822 1766 aa9.95□□□□□ -0.82
SCFD1-222ENST00000556768 KIF7Q2M1P5 1343 aa9.94□□□□□ -0.82
SCFD1-222ENST00000556768 MPRIPQ6WCQ1 1025 aa9.94□□□□□ -0.82
SCFD1-222ENST00000556768 ARXQ96QS3 562 aa9.94□□□□□ -0.82
SCFD1-222ENST00000556768 TFCP2L1Q9NZI6 479 aa9.94□□□□□ -0.82
SCFD1-222ENST00000556768 TNS1Q9HBL0 1735 aaKnown RBP9.94□□□□□ -0.82
SCFD1-222ENST00000556768 RGPD5Q99666 1765 aa9.94□□□□□ -0.82
SCFD1-222ENST00000556768 ZBTB7AO95365 584 aa9.93□□□□□ -0.82
SCFD1-222ENST00000556768 EIF4A2Q14240 407 aaKnown RBP9.93□□□□□ -0.82
SCFD1-222ENST00000556768 IFNL2Q8IZJ0 200 aa9.93□□□□□ -0.82
SCFD1-222ENST00000556768 PEAK1Q9H792 1746 aa9.93□□□□□ -0.82
SCFD1-222ENST00000556768 MEGF6O75095 1541 aa9.93□□□□□ -0.82
SCFD1-222ENST00000556768 SMARCC1Q92922 1105 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-222ENST00000556768 MTFR1LQ9H019 292 aa9.93□□□□□ -0.82
SCFD1-222ENST00000556768 CCNL1Q9UK58 526 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-222ENST00000556768 CYP27B1O15528 508 aa9.92□□□□□ -0.82
SCFD1-222ENST00000556768 AMOTQ4VCS5 1084 aa9.92□□□□□ -0.82
SCFD1-222ENST00000556768 PLEKHO1Q53GL0 409 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-222ENST00000556768 LRRC4BQ9NT99 713 aa9.92□□□□□ -0.82
SCFD1-222ENST00000556768 HSP90AB1P08238 724 aaKnown RBP9.91□□□□□ -0.82
SCFD1-222ENST00000556768 SLC16A10Q8TF71 515 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms