RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 AEBP1Q8IUX7 1158 aa15.38■□□□□ 0.05
CCDC88C-212ENST00000556767 HMOX1P09601 288 aa15.37■□□□□ 0.05
CCDC88C-212ENST00000556767 CCDC125Q86Z20 511 aa15.37■□□□□ 0.05
CCDC88C-212ENST00000556767 NUDCQ9Y266 331 aa15.37■□□□□ 0.05
CCDC88C-212ENST00000556767 NCAPD2Q15021 1401 aa15.36■□□□□ 0.05
CCDC88C-212ENST00000556767 SPG7Q9UQ90 795 aa15.36■□□□□ 0.05
CCDC88C-212ENST00000556767 COL3A1P02461 1466 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-212ENST00000556767 MYBBP1AQ9BQG0 1328 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-212ENST00000556767 PCDH11XQ9BZA7 1347 aa15.35■□□□□ 0.05
CCDC88C-212ENST00000556767 PCDH11YQ9BZA8 1340 aa15.35■□□□□ 0.05
CCDC88C-212ENST00000556767 PLEKHO1Q53GL0 409 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-212ENST00000556767 ACSBG1Q96GR2 724 aa15.34■□□□□ 0.05
CCDC88C-212ENST00000556767 PRKRIP1Q9H875 184 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-212ENST00000556767 RGPD1P0DJD0 1748 aa15.34■□□□□ 0.05
CCDC88C-212ENST00000556767 U2AF1L5P0DN76 240 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-212ENST00000556767 U2AF1Q01081 240 aaKnown RBP eCLIP15.33■□□□□ 0.04
CCDC88C-212ENST00000556767 KAT6BQ8WYB5 2073 aa15.32■□□□□ 0.04
CCDC88C-212ENST00000556767 ANP32CO43423 234 aa15.32■□□□□ 0.04
CCDC88C-212ENST00000556767 APBA3O96018 575 aa15.32■□□□□ 0.04
CCDC88C-212ENST00000556767 BAG6P46379 1132 aa15.32■□□□□ 0.04
CCDC88C-212ENST00000556767 DEFB132Q7Z7B7 95 aa15.32■□□□□ 0.04
CCDC88C-212ENST00000556767 SYTL4Q96C24 671 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-212ENST00000556767 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.32■□□□□ 0.04
CCDC88C-212ENST00000556767 SHANK3Q9BYB0 1731 aa15.31■□□□□ 0.04
CCDC88C-212ENST00000556767 AMOTQ4VCS5 1084 aa15.31■□□□□ 0.04
CCDC88C-212ENST00000556767 KDRP35968 1356 aa15.31■□□□□ 0.04
CCDC88C-212ENST00000556767 PKD1L3Q7Z443 1732 aa15.31■□□□□ 0.04
CCDC88C-212ENST00000556767 BCL9O00512 1426 aa15.3■□□□□ 0.04
CCDC88C-212ENST00000556767 CYP27B1O15528 508 aa15.3■□□□□ 0.04
CCDC88C-212ENST00000556767 KCNQ2O43526 872 aa15.3■□□□□ 0.04
CCDC88C-212ENST00000556767 ZNF530Q6P9A1 599 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-212ENST00000556767 IFNL2Q8IZJ0 200 aa15.3■□□□□ 0.04
CCDC88C-212ENST00000556767 BCL11BQ9C0K0 894 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-212ENST00000556767 SBF2Q86WG5 1849 aa15.29■□□□□ 0.04
CCDC88C-212ENST00000556767 EN1Q05925 392 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-212ENST00000556767 PTF1AQ7RTS3 328 aa15.29■□□□□ 0.04
CCDC88C-212ENST00000556767 PHKG2P15735 406 aa15.28■□□□□ 0.04
CCDC88C-212ENST00000556767 PRKAR2BP31323 418 aa15.28■□□□□ 0.04
CCDC88C-212ENST00000556767 PRIM1P49642 420 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-212ENST00000556767 C1orf141Q5JVX7 400 aa15.28■□□□□ 0.04
CCDC88C-212ENST00000556767 TNS1Q9HBL0 1735 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-212ENST00000556767 PLEKHG2Q9H7P9 1386 aa15.27■□□□□ 0.04
CCDC88C-212ENST00000556767 DOT1LQ8TEK3 1739 aa15.26■□□□□ 0.03
CCDC88C-212ENST00000556767 NHSQ6T4R5 1651 aa15.26■□□□□ 0.03
CCDC88C-212ENST00000556767 FCHSD2O94868 740 aa15.25■□□□□ 0.03
CCDC88C-212ENST00000556767 NEFMP07197 916 aa15.25■□□□□ 0.03
CCDC88C-212ENST00000556767 HSP90AB1P08238 724 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-212ENST00000556767 EZH2Q15910 746 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-212ENST00000556767 MTHFSDQ2M296 383 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-212ENST00000556767 MPRIPQ6WCQ1 1025 aa15.25■□□□□ 0.03
CCDC88C-212ENST00000556767 RSPH6AQ9H0K4 717 aa15.25■□□□□ 0.03
CCDC88C-212ENST00000556767 WDR43Q15061 677 aaKnown RBP eCLIP15.24■□□□□ 0.03
CCDC88C-212ENST00000556767 NKX1-1Q15270 411 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-212ENST00000556767 AKAP4Q5JQC9 854 aa15.23■□□□□ 0.03
CCDC88C-212ENST00000556767 GAS2L2Q8NHY3 880 aa15.23■□□□□ 0.03
CCDC88C-212ENST00000556767 DCAF5Q96JK2 942 aa15.22■□□□□ 0.03
CCDC88C-212ENST00000556767 PHACTR3Q96KR7 559 aa15.22■□□□□ 0.03
CCDC88C-212ENST00000556767 CAMKK2Q96RR4 588 aa15.22■□□□□ 0.03
CCDC88C-212ENST00000556767 PNNQ9H307 717 aaKnown RBP15.22■□□□□ 0.03
CCDC88C-212ENST00000556767 TMOD3Q9NYL9 352 aa15.22■□□□□ 0.03
CCDC88C-212ENST00000556767 BTAF1O14981 1849 aa15.22■□□□□ 0.03
CCDC88C-212ENST00000556767 PLSCR1O15162 318 aa15.21■□□□□ 0.03
CCDC88C-212ENST00000556767 TOGARAM1Q9Y4F4 1720 aa15.2■□□□□ 0.02
CCDC88C-212ENST00000556767 MAPK8IP3Q9UPT6 1336 aa15.2■□□□□ 0.02
CCDC88C-212ENST00000556767 CABP4P57796 275 aa15.2■□□□□ 0.02
CCDC88C-212ENST00000556767 ERVV-2B6SEH9 535 aa15.19■□□□□ 0.02
CCDC88C-212ENST00000556767 CCDC184Q52MB2 194 aa15.19■□□□□ 0.02
CCDC88C-212ENST00000556767 PIGBQ92521 554 aa15.19■□□□□ 0.02
CCDC88C-212ENST00000556767 MRS2Q9HD23 443 aa15.19■□□□□ 0.02
CCDC88C-212ENST00000556767 ITGB4P16144 1822 aa15.19■□□□□ 0.02
CCDC88C-212ENST00000556767 KDM6AO15550 1401 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-212ENST00000556767 GNAT3A8MTJ3 354 aa15.18■□□□□ 0.02
CCDC88C-212ENST00000556767 TXNRD1Q16881 649 aa15.18■□□□□ 0.02
CCDC88C-212ENST00000556767 LGR6Q9HBX8 967 aa15.18■□□□□ 0.02
CCDC88C-212ENST00000556767 MAP3K5Q99683 1374 aa15.18■□□□□ 0.02
CCDC88C-212ENST00000556767 RNMTO43148 476 aaKnown RBP15.17■□□□□ 0.02
CCDC88C-212ENST00000556767 CCDC146Q8IYE0 955 aa15.17■□□□□ 0.02
CCDC88C-212ENST00000556767 ADAMTS8Q9UP79 889 aa15.17■□□□□ 0.02
CCDC88C-212ENST00000556767 NBPF14Q5TI25 921 aa15.16■□□□□ 0.02
CCDC88C-212ENST00000556767 NFATC2IPQ8NCF5 419 aa15.16■□□□□ 0.02
CCDC88C-212ENST00000556767 RTF1Q92541 710 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-212ENST00000556767 SMARCC1Q92922 1105 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-212ENST00000556767 PLEKHF1Q96S99 279 aa15.16■□□□□ 0.02
CCDC88C-212ENST00000556767 EP400Q96L91 3159 aa15.16■□□□□ 0.02
CCDC88C-212ENST00000556767 PALLDQ8WX93 1383 aa15.15■□□□□ 0.02
CCDC88C-212ENST00000556767 PROM2Q8N271 834 aa15.15■□□□□ 0.02
CCDC88C-212ENST00000556767 RGPD3A6NKT7 1758 aaPredicted RBP15.15■□□□□ 0.02
CCDC88C-212ENST00000556767 RGPD4Q7Z3J3 1758 aa15.15■□□□□ 0.02
CCDC88C-212ENST00000556767 SCN11AQ9UI33 1791 aa15.15■□□□□ 0.02
CCDC88C-212ENST00000556767 RREB1Q92766 1687 aa15.14■□□□□ 0.01
CCDC88C-212ENST00000556767 KCNQ4P56696 695 aa15.14■□□□□ 0.01
CCDC88C-212ENST00000556767 TEFQ10587 303 aa15.14■□□□□ 0.01
CCDC88C-212ENST00000556767 DIEXFQ68CQ4 756 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-212ENST00000556767 SLC52A2Q9HAB3 445 aa15.14■□□□□ 0.01
CCDC88C-212ENST00000556767 CCNL1Q9UK58 526 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-212ENST00000556767 ASAP1Q9ULH1 1129 aa15.14■□□□□ 0.01
CCDC88C-212ENST00000556767 NFE2L2Q16236 605 aa15.13■□□□□ 0.01
CCDC88C-212ENST00000556767 SLC27A3Q5K4L6 730 aa15.13■□□□□ 0.01
CCDC88C-212ENST00000556767 IL17REQ8NFR9 667 aa15.13■□□□□ 0.01
CCDC88C-212ENST00000556767 RUNDC1Q96C34 613 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms