RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 SEMA3FQ13275 785 aa7.92□□□□□ -1.14
TDP1-215ENST00000556498 SETDB1Q15047 1291 aa7.92□□□□□ -1.14
TDP1-215ENST00000556498 IFFO2Q5TF58 517 aa7.92□□□□□ -1.14
TDP1-215ENST00000556498 SH3BP5LQ7L8J4 393 aa7.92□□□□□ -1.14
TDP1-215ENST00000556498 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.92□□□□□ -1.14
TDP1-215ENST00000556498 GEMIN8Q9NWZ8 242 aaKnown RBP7.92□□□□□ -1.14
TDP1-215ENST00000556498 SSR1P43307 286 aaKnown RBP7.91□□□□□ -1.14
TDP1-215ENST00000556498 PLA2G2CQ5R387 149 aa7.91□□□□□ -1.14
TDP1-215ENST00000556498 TSHZ1Q6ZSZ6 1077 aa7.91□□□□□ -1.14
TDP1-215ENST00000556498 EGFL6Q8IUX8 553 aa7.91□□□□□ -1.14
TDP1-215ENST00000556498 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.91□□□□□ -1.14
TDP1-215ENST00000556498 HMGB1P1B2RPK0 211 aaPredicted RBP7.9□□□□□ -1.14
TDP1-215ENST00000556498 ZBTB24O43167 697 aaPredicted RBP7.9□□□□□ -1.14
TDP1-215ENST00000556498 SPTY2D1Q68D10 685 aaPredicted RBP7.9□□□□□ -1.14
TDP1-215ENST00000556498 SH3RF1Q7Z6J0 888 aa7.9□□□□□ -1.14
TDP1-215ENST00000556498 ZNF511Q8NB15 262 aa7.9□□□□□ -1.14
TDP1-215ENST00000556498 ARHGAP9Q9BRR9 750 aa7.9□□□□□ -1.14
TDP1-215ENST00000556498 RBM28Q9NW13 759 aaKnown RBP7.9□□□□□ -1.14
TDP1-215ENST00000556498 BSDC1Q9NW68 430 aaPredicted RBP7.9□□□□□ -1.14
TDP1-215ENST00000556498 E9PSI1 815 aa7.89□□□□□ -1.15
TDP1-215ENST00000556498 FAM50AQ14320 339 aaKnown RBP7.89□□□□□ -1.15
TDP1-215ENST00000556498 LINC01559Q495D7 138 aa7.89□□□□□ -1.15
TDP1-215ENST00000556498 DNTTIP2Q5QJE6 756 aaKnown RBP7.89□□□□□ -1.15
TDP1-215ENST00000556498 OTUD6BQ8N6M0 293 aa7.89□□□□□ -1.15
TDP1-215ENST00000556498 ADAM32Q8TC27 787 aa7.89□□□□□ -1.15
TDP1-215ENST00000556498 TERF2IPQ9NYB0 399 aa7.89□□□□□ -1.15
TDP1-215ENST00000556498 MTMR7Q9Y216 660 aa7.89□□□□□ -1.15
TDP1-215ENST00000556498 SH3BP1Q9Y3L3 701 aa7.89□□□□□ -1.15
TDP1-215ENST00000556498 RPIAP49247 311 aa7.88□□□□□ -1.15
TDP1-215ENST00000556498 MCCD1P59942 119 aaPredicted RBP7.88□□□□□ -1.15
TDP1-215ENST00000556498 SH3BP2P78314 561 aa7.88□□□□□ -1.15
TDP1-215ENST00000556498 TRIM32Q13049 653 aa7.88□□□□□ -1.15
TDP1-215ENST00000556498 RINLQ6ZS11 566 aa7.88□□□□□ -1.15
TDP1-215ENST00000556498 ZBTB33Q86T24 672 aa7.88□□□□□ -1.15
TDP1-215ENST00000556498 BPHLQ86WA6 291 aaPredicted RBP7.88□□□□□ -1.15
TDP1-215ENST00000556498 FOXJ1Q92949 421 aa7.88□□□□□ -1.15
TDP1-215ENST00000556498 GOLIM4O00461 696 aa7.87□□□□□ -1.15
TDP1-215ENST00000556498 C4orf48Q5BLP8 95 aa7.87□□□□□ -1.15
TDP1-215ENST00000556498 CCDC125Q86Z20 511 aa7.87□□□□□ -1.15
TDP1-215ENST00000556498 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.87□□□□□ -1.15
TDP1-215ENST00000556498 UCN2Q96RP3 112 aa7.87□□□□□ -1.15
TDP1-215ENST00000556498 GTPBP4Q9BZE4 634 aaKnown RBP7.87□□□□□ -1.15
TDP1-215ENST00000556498 PNNQ9H307 717 aaKnown RBP7.87□□□□□ -1.15
TDP1-215ENST00000556498 RAI14Q9P0K7 980 aa7.87□□□□□ -1.15
TDP1-215ENST00000556498 MAGEB6P1A0A0J9YX57 407 aa7.86□□□□□ -1.15
TDP1-215ENST00000556498 ANP32CO43423 234 aa7.86□□□□□ -1.15
TDP1-215ENST00000556498 LETM1O95202 739 aaPredicted RBP7.86□□□□□ -1.15
TDP1-215ENST00000556498 HDAC1Q13547 482 aaPredicted RBP7.86□□□□□ -1.15
TDP1-215ENST00000556498 AGERQ15109 404 aa7.86□□□□□ -1.15
TDP1-215ENST00000556498 MKL1Q969V6 931 aa7.86□□□□□ -1.15
TDP1-215ENST00000556498 PPP1R12CQ9BZL4 782 aa7.86□□□□□ -1.15
TDP1-215ENST00000556498 CEP126Q9P2H0 1117 aa7.86□□□□□ -1.15
TDP1-215ENST00000556498 PCDHB9Q9Y5E1 797 aa7.86□□□□□ -1.15
TDP1-215ENST00000556498 ZCCHC6Q5VYS8 1495 aaKnown RBP7.86□□□□□ -1.15
TDP1-215ENST00000556498 LOC102724159A0A0B4J2E5 919 aa7.85□□□□□ -1.15
TDP1-215ENST00000556498 PALM3A6NDB9 673 aaPredicted RBP7.85□□□□□ -1.15
TDP1-215ENST00000556498 CD2BP2O95400 341 aaKnown RBP7.85□□□□□ -1.15
TDP1-215ENST00000556498 ERCC3P19447 782 aa7.85□□□□□ -1.15
TDP1-215ENST00000556498 WNT7BP56706 349 aa7.85□□□□□ -1.15
TDP1-215ENST00000556498 PWP2Q15269 919 aaKnown RBP7.85□□□□□ -1.15
TDP1-215ENST00000556498 ERFEQ4G0M1 354 aa7.85□□□□□ -1.15
TDP1-215ENST00000556498 CARD14Q9BXL6 1004 aa7.85□□□□□ -1.15
TDP1-215ENST00000556498 SLC52A1Q9NWF4 448 aa7.85□□□□□ -1.15
TDP1-215ENST00000556498 TFIP11Q9UBB9 837 aaKnown RBP7.85□□□□□ -1.15
TDP1-215ENST00000556498 FEZ2Q9UHY8 353 aaPredicted RBP7.85□□□□□ -1.15
TDP1-215ENST00000556498 SKOR1P84550 965 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 DMTNQ08495 405 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 ZKSCAN8Q15776 578 aaPredicted RBP7.84□□□□□ -1.15
TDP1-215ENST00000556498 CFAP70Q5T0N1 1121 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 NBPF6Q5VWK0 638 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 LIAT1Q6ZQX7 453 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 NBPF5PQ86XG9 351 aaPredicted RBP7.84□□□□□ -1.15
TDP1-215ENST00000556498 FAM9BQ8IZU0 186 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 EMID1Q96A84 441 aaPredicted RBP7.84□□□□□ -1.15
TDP1-215ENST00000556498 NBPF4Q96M43 638 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 C1QTNF2Q9BXJ5 285 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 TSPYL1Q9H0U9 437 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 RIPOR2Q9Y4F9 1068 aa7.84□□□□□ -1.15
TDP1-215ENST00000556498 TERF1P54274 439 aa7.83□□□□□ -1.16
TDP1-215ENST00000556498 TMCO4Q5TGY1 634 aa7.83□□□□□ -1.16
TDP1-215ENST00000556498 NBPF10Q6P3W6 841 aaKnown RBP7.83□□□□□ -1.16
TDP1-215ENST00000556498 TBC1D9Q6ZT07 1266 aa7.83□□□□□ -1.16
TDP1-215ENST00000556498 DZIP3Q86Y13 1208 aaKnown RBP7.83□□□□□ -1.16
TDP1-215ENST00000556498 PHTF2Q8N3S3 785 aa7.83□□□□□ -1.16
TDP1-215ENST00000556498 MYH16Q9H6N6 1097 aa7.83□□□□□ -1.16
TDP1-215ENST00000556498 PLA2G2EQ9NZK7 142 aa7.83□□□□□ -1.16
TDP1-215ENST00000556498 NUB1Q9Y5A7 615 aa7.83□□□□□ -1.16
TDP1-215ENST00000556498 PIK3CDO00329 1044 aa7.82□□□□□ -1.16
TDP1-215ENST00000556498 MYBPC2Q14324 1141 aa7.82□□□□□ -1.16
TDP1-215ENST00000556498 CCDC96Q2M329 555 aa7.82□□□□□ -1.16
TDP1-215ENST00000556498 TRMT44Q8IYL2 757 aaKnown RBP7.82□□□□□ -1.16
TDP1-215ENST00000556498 NFATC2IPQ8NCF5 419 aa7.82□□□□□ -1.16
TDP1-215ENST00000556498 ATP9BO43861 1147 aa7.81□□□□□ -1.16
TDP1-215ENST00000556498 VARSP26640 1264 aaKnown RBP7.81□□□□□ -1.16
TDP1-215ENST00000556498 ARID4AP29374 1257 aaPredicted RBP7.81□□□□□ -1.16
TDP1-215ENST00000556498 SLC19A1P41440 591 aa7.81□□□□□ -1.16
TDP1-215ENST00000556498 SATB1Q01826 763 aa7.81□□□□□ -1.16
TDP1-215ENST00000556498 MAP2K1Q02750 393 aaPredicted RBP7.81□□□□□ -1.16
TDP1-215ENST00000556498 SLFNL1Q499Z3 407 aa7.81□□□□□ -1.16
TDP1-215ENST00000556498 ZNF428Q96B54 188 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms