RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 FLIIQ13045 1269 aa11.26□□□□□ -0.61
PRPF39-209ENST00000556353 SLFNL1Q499Z3 407 aa11.26□□□□□ -0.61
PRPF39-209ENST00000556353 CCDC85AQ96PX6 553 aaPredicted RBP11.26□□□□□ -0.61
PRPF39-209ENST00000556353 ERBB4Q15303 1308 aa11.26□□□□□ -0.61
PRPF39-209ENST00000556353 GMPRP36959 345 aa11.25□□□□□ -0.61
PRPF39-209ENST00000556353 FOXD4L5Q5VV16 416 aaPredicted RBP11.25□□□□□ -0.61
PRPF39-209ENST00000556353 MEN1O00255 615 aa11.24□□□□□ -0.61
PRPF39-209ENST00000556353 MYCP01106 439 aaPredicted RBP11.24□□□□□ -0.61
PRPF39-209ENST00000556353 INSM1Q01101 510 aaPredicted RBP11.24□□□□□ -0.61
PRPF39-209ENST00000556353 OSBPL3Q9H4L5 887 aa11.24□□□□□ -0.61
PRPF39-209ENST00000556353 A0A1W2PRU2 124 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 RAD21O60216 631 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 TRAK2O60296 914 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 VSIG8P0DPA2 414 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 SOX11P35716 441 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 RNF144AP50876 292 aaPredicted RBP11.23□□□□□ -0.61
PRPF39-209ENST00000556353 SEMA3FQ13275 785 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 LYSMD3Q7Z3D4 306 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 RNF135Q8IUD6 432 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 WWC1Q8IX03 1113 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 DOLKQ9UPQ8 538 aa11.23□□□□□ -0.61
PRPF39-209ENST00000556353 PHTF2Q8N3S3 785 aa11.22□□□□□ -0.61
PRPF39-209ENST00000556353 CCDC155Q8N6L0 562 aa11.22□□□□□ -0.61
PRPF39-209ENST00000556353 NLRP3Q96P20 1036 aa11.22□□□□□ -0.61
PRPF39-209ENST00000556353 CDCA7Q9BWT1 371 aaPredicted RBP11.22□□□□□ -0.61
PRPF39-209ENST00000556353 SLC35F4A4IF30 521 aa11.21□□□□□ -0.61
PRPF39-209ENST00000556353 UBTFP17480 764 aaKnown RBP11.21□□□□□ -0.61
PRPF39-209ENST00000556353 GPC1P35052 558 aa11.21□□□□□ -0.61
PRPF39-209ENST00000556353 CLN3Q13286 438 aa11.2□□□□□ -0.62
PRPF39-209ENST00000556353 POM121Q96HA1 1249 aa11.2□□□□□ -0.62
PRPF39-209ENST00000556353 ARHGEF10LQ9HCE6 1279 aa11.2□□□□□ -0.62
PRPF39-209ENST00000556353 TSGA10IPQ3SY00 556 aa11.19□□□□□ -0.62
PRPF39-209ENST00000556353 PRICKLE2Q7Z3G6 844 aa11.19□□□□□ -0.62
PRPF39-209ENST00000556353 GNRH1P01148 92 aa11.18□□□□□ -0.62
PRPF39-209ENST00000556353 USP4Q13107 963 aa11.18□□□□□ -0.62
PRPF39-209ENST00000556353 SLC27A3Q5K4L6 730 aa11.18□□□□□ -0.62
PRPF39-209ENST00000556353 OXLD1Q5BKU9 147 aa11.17□□□□□ -0.62
PRPF39-209ENST00000556353 CHIC2Q9UKJ5 165 aa11.17□□□□□ -0.62
PRPF39-209ENST00000556353 ITGA6P23229 1130 aa11.16□□□□□ -0.62
PRPF39-209ENST00000556353 SIRT1Q96EB6 747 aa11.16□□□□□ -0.62
PRPF39-209ENST00000556353 RAB6BQ9NRW1 208 aa11.16□□□□□ -0.62
PRPF39-209ENST00000556353 SENP3-EIF4A1A0A087X0R7 540 aa11.15□□□□□ -0.62
PRPF39-209ENST00000556353 RHOQP17081 205 aa11.15□□□□□ -0.62
PRPF39-209ENST00000556353 MAP7D1Q3KQU3 841 aa11.15□□□□□ -0.62
PRPF39-209ENST00000556353 PLPP7Q8NBV4 271 aa11.14□□□□□ -0.63
PRPF39-209ENST00000556353 NANOS1Q8WY41 292 aaKnown RBP11.14□□□□□ -0.63
PRPF39-209ENST00000556353 CNKSR1Q969H4 720 aa11.14□□□□□ -0.63
PRPF39-209ENST00000556353 ESYT1Q9BSJ8 1104 aa11.13□□□□□ -0.63
PRPF39-209ENST00000556353 GRIP2Q9C0E4 1043 aa11.13□□□□□ -0.63
PRPF39-209ENST00000556353 CDC14CA4D256 554 aa11.12□□□□□ -0.63
PRPF39-209ENST00000556353 IL2RAP01589 272 aa11.12□□□□□ -0.63
PRPF39-209ENST00000556353 ESCO1Q5FWF5 840 aa11.12□□□□□ -0.63
PRPF39-209ENST00000556353 STK17AQ9UEE5 414 aa11.12□□□□□ -0.63
PRPF39-209ENST00000556353 POU4F2Q12837 409 aa11.11□□□□□ -0.63
PRPF39-209ENST00000556353 VWA5B2Q8N398 1253 aa11.11□□□□□ -0.63
PRPF39-209ENST00000556353 ALG2Q9H553 416 aa11.11□□□□□ -0.63
PRPF39-209ENST00000556353 SV2AQ7L0J3 742 aa11.1□□□□□ -0.63
PRPF39-209ENST00000556353 GPR161Q8N6U8 529 aaKnown RBP11.1□□□□□ -0.63
PRPF39-209ENST00000556353 ZSCAN1Q8NBB4 408 aa11.1□□□□□ -0.63
PRPF39-209ENST00000556353 SPATA31C2B4DYI2 1134 aa11.09□□□□□ -0.63
PRPF39-209ENST00000556353 PIK3CDO00329 1044 aa11.09□□□□□ -0.63
PRPF39-209ENST00000556353 CENPCQ03188 943 aa11.09□□□□□ -0.63
PRPF39-209ENST00000556353 XAGE2Q96GT9 111 aa11.09□□□□□ -0.63
PRPF39-209ENST00000556353 WDR44Q5JSH3 913 aa11.08□□□□□ -0.64
PRPF39-209ENST00000556353 NBPF10Q6P3W6 841 aaKnown RBP11.08□□□□□ -0.64
PRPF39-209ENST00000556353 NBPF15Q8N660 670 aa11.08□□□□□ -0.64
PRPF39-209ENST00000556353 DYRK1BQ9Y463 629 aa11.08□□□□□ -0.64
PRPF39-209ENST00000556353 FAM181BA6NEQ2 426 aa11.07□□□□□ -0.64
PRPF39-209ENST00000556353 SKIP12755 728 aa11.07□□□□□ -0.64
PRPF39-209ENST00000556353 GTF2E1P29083 439 aaPredicted RBP11.07□□□□□ -0.64
PRPF39-209ENST00000556353 TAS1R3Q7RTX0 852 aa11.07□□□□□ -0.64
PRPF39-209ENST00000556353 ZSCAN10Q96SZ4 725 aaPredicted RBP11.07□□□□□ -0.64
PRPF39-209ENST00000556353 HRH3Q9Y5N1 445 aa11.07□□□□□ -0.64
PRPF39-209ENST00000556353 POM121CA8CG34 1229 aa11.06□□□□□ -0.64
PRPF39-209ENST00000556353 WASLO00401 505 aaPredicted RBP11.06□□□□□ -0.64
PRPF39-209ENST00000556353 NFATC2IPQ8NCF5 419 aa11.06□□□□□ -0.64
PRPF39-209ENST00000556353 COL25A1Q9BXS0 654 aaPredicted RBP11.06□□□□□ -0.64
PRPF39-209ENST00000556353 ETNK1Q9HBU6 452 aa11.06□□□□□ -0.64
PRPF39-209ENST00000556353 STAU1O95793 577 aaKnown RBP11.05□□□□□ -0.64
PRPF39-209ENST00000556353 LORP23490 312 aaPredicted RBP11.05□□□□□ -0.64
PRPF39-209ENST00000556353 EML3Q32P44 896 aa11.05□□□□□ -0.64
PRPF39-209ENST00000556353 RIPOR1Q6ZS17 1223 aa11.05□□□□□ -0.64
PRPF39-209ENST00000556353 CNTNAP3BQ96NU0 1288 aa11.05□□□□□ -0.64
PRPF39-209ENST00000556353 GAS2L1Q99501 681 aaPredicted RBP11.05□□□□□ -0.64
PRPF39-209ENST00000556353 CNTNAP3Q9BZ76 1288 aa11.05□□□□□ -0.64
PRPF39-209ENST00000556353 TIMMDC1Q9NPL8 285 aa11.05□□□□□ -0.64
PRPF39-209ENST00000556353 CUEDC1Q9NWM3 386 aaPredicted RBP11.05□□□□□ -0.64
PRPF39-209ENST00000556353 LZTS3O60299 673 aaPredicted RBP11.04□□□□□ -0.64
PRPF39-209ENST00000556353 KRT76Q01546 638 aa11.04□□□□□ -0.64
PRPF39-209ENST00000556353 GNASQ5JWF2 1037 aa11.04□□□□□ -0.64
PRPF39-209ENST00000556353 TMEM214Q6NUQ4 689 aaKnown RBP11.04□□□□□ -0.64
PRPF39-209ENST00000556353 CLUAP1Q96AJ1 413 aa11.04□□□□□ -0.64
PRPF39-209ENST00000556353 GMCL1Q96IK5 515 aa11.04□□□□□ -0.64
PRPF39-209ENST00000556353 FHDC1Q9C0D6 1143 aaPredicted RBP11.04□□□□□ -0.64
PRPF39-209ENST00000556353 TLR1Q15399 786 aa11.03□□□□□ -0.64
PRPF39-209ENST00000556353 TRIM22Q8IYM9 498 aa11.03□□□□□ -0.64
PRPF39-209ENST00000556353 SCNN1DP51172 638 aa11.02□□□□□ -0.65
PRPF39-209ENST00000556353 GDF10P55107 478 aa11.02□□□□□ -0.65
PRPF39-209ENST00000556353 HDGFL1Q5TGJ6 251 aa11.02□□□□□ -0.65
PRPF39-209ENST00000556353 ADAMTS19Q8TE59 1207 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms