RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 KCNH5Q8NCM2 988 aa8.91□□□□□ -0.98
TMEM260-209ENST00000556079 ANKRD24Q8TF21 1146 aa8.91□□□□□ -0.98
TMEM260-209ENST00000556079 PUS7Q96PZ0 661 aaKnown RBP8.91□□□□□ -0.98
TMEM260-209ENST00000556079 TIMELESSQ9UNS1 1208 aa8.91□□□□□ -0.98
TMEM260-209ENST00000556079 FARP1Q9Y4F1 1045 aaPredicted RBP8.91□□□□□ -0.98
TMEM260-209ENST00000556079 NUP188Q5SRE5 1749 aa8.91□□□□□ -0.98
TMEM260-209ENST00000556079 SHANK3Q9BYB0 1731 aa8.91□□□□□ -0.98
TMEM260-209ENST00000556079 NINLQ9Y2I6 1382 aa8.9□□□□□ -0.98
TMEM260-209ENST00000556079 ERBB3P21860 1342 aa8.9□□□□□ -0.98
TMEM260-209ENST00000556079 FKBP8Q14318 412 aa8.9□□□□□ -0.98
TMEM260-209ENST00000556079 NBPF14Q5TI25 921 aa8.9□□□□□ -0.98
TMEM260-209ENST00000556079 USHBP1Q8N6Y0 703 aa8.9□□□□□ -0.98
TMEM260-209ENST00000556079 MARCH10Q8NA82 808 aaPredicted RBP8.9□□□□□ -0.98
TMEM260-209ENST00000556079 NLRP2Q9NX02 1062 aa8.9□□□□□ -0.98
TMEM260-209ENST00000556079 GOLGB1Q14789 3259 aaKnown RBP8.9□□□□□ -0.98
TMEM260-209ENST00000556079 RREB1Q92766 1687 aa8.9□□□□□ -0.98
TMEM260-209ENST00000556079 KAT6BQ8WYB5 2073 aa8.9□□□□□ -0.99
TMEM260-209ENST00000556079 ABCC6O95255 1503 aa8.9□□□□□ -0.99
TMEM260-209ENST00000556079 C19orf67A6NJJ6 358 aa8.89□□□□□ -0.99
TMEM260-209ENST00000556079 EIF4G2P78344 907 aaKnown RBP eCLIP8.89□□□□□ -0.99
TMEM260-209ENST00000556079 COG3Q96JB2 828 aa8.89□□□□□ -0.99
TMEM260-209ENST00000556079 CREBZFQ9NS37 354 aa8.89□□□□□ -0.99
TMEM260-209ENST00000556079 PPP1R1BQ9UD71 204 aaPredicted RBP8.89□□□□□ -0.99
TMEM260-209ENST00000556079 EMILIN1Q9Y6C2 1016 aa8.89□□□□□ -0.99
TMEM260-209ENST00000556079 ANKRD26Q9UPS8 1709 aa8.88□□□□□ -0.99
TMEM260-209ENST00000556079 KCNQ2O43526 872 aa8.88□□□□□ -0.99
TMEM260-209ENST00000556079 HOXC9P31274 260 aa8.88□□□□□ -0.99
TMEM260-209ENST00000556079 CARD10Q9BWT7 1032 aa8.88□□□□□ -0.99
TMEM260-209ENST00000556079 PDGFDQ9GZP0 370 aaPredicted RBP8.88□□□□□ -0.99
TMEM260-209ENST00000556079 SPON1Q9HCB6 807 aa8.88□□□□□ -0.99
TMEM260-209ENST00000556079 ANO8Q9HCE9 1232 aaPredicted RBP8.88□□□□□ -0.99
TMEM260-209ENST00000556079 MAP2P11137 1827 aaKnown RBP8.88□□□□□ -0.99
TMEM260-209ENST00000556079 MEGF6O75095 1541 aa8.88□□□□□ -0.99
TMEM260-209ENST00000556079 TNS2Q63HR2 1409 aa8.88□□□□□ -0.99
TMEM260-209ENST00000556079 TNNT2P45379 298 aaPredicted RBP8.87□□□□□ -0.99
TMEM260-209ENST00000556079 DDB1Q16531 1140 aa8.87□□□□□ -0.99
TMEM260-209ENST00000556079 HSP90AB2PQ58FF8 381 aa8.87□□□□□ -0.99
TMEM260-209ENST00000556079 PROM2Q8N271 834 aa8.87□□□□□ -0.99
TMEM260-209ENST00000556079 IP6K1Q92551 441 aa8.87□□□□□ -0.99
TMEM260-209ENST00000556079 AMPHP49418 695 aa8.86□□□□□ -0.99
TMEM260-209ENST00000556079 ACSBG1Q96GR2 724 aa8.86□□□□□ -0.99
TMEM260-209ENST00000556079 PANK3Q9H999 370 aa8.86□□□□□ -0.99
TMEM260-209ENST00000556079 THRAP3Q9Y2W1 955 aaKnown RBP8.86□□□□□ -0.99
TMEM260-209ENST00000556079 OVOS2A0A0G2JMS6 1433 aa8.86□□□□□ -0.99
TMEM260-209ENST00000556079 DOT1LQ8TEK3 1739 aa8.85□□□□□ -0.99
TMEM260-209ENST00000556079 KIF7Q2M1P5 1343 aa8.85□□□□□ -0.99
TMEM260-209ENST00000556079 NHSQ6T4R5 1651 aa8.85□□□□□ -0.99
TMEM260-209ENST00000556079 BTAF1O14981 1849 aa8.85□□□□□ -0.99
TMEM260-209ENST00000556079 ZBTB7AO95365 584 aa8.85□□□□□ -0.99
TMEM260-209ENST00000556079 NBPF6Q5VWK0 638 aa8.85□□□□□ -0.99
TMEM260-209ENST00000556079 NBPF4Q96M43 638 aa8.85□□□□□ -0.99
TMEM260-209ENST00000556079 CCDC7Q96M83 1385 aa8.85□□□□□ -0.99
TMEM260-209ENST00000556079 PPM1GO15355 546 aaPredicted RBP8.84□□□□□ -0.99
TMEM260-209ENST00000556079 CD44P16070 742 aaKnown RBP8.84□□□□□ -0.99
TMEM260-209ENST00000556079 CNGB1Q14028 1251 aaPredicted RBP8.84□□□□□ -0.99
TMEM260-209ENST00000556079 CDCA8Q53HL2 280 aa8.84□□□□□ -0.99
TMEM260-209ENST00000556079 TOGARAM1Q9Y4F4 1720 aa8.83□□□□□ -1
TMEM260-209ENST00000556079 PLSCR1O15162 318 aa8.83□□□□□ -1
TMEM260-209ENST00000556079 IL2RBP14784 551 aa8.83□□□□□ -1
TMEM260-209ENST00000556079 BCL11BQ9C0K0 894 aaPredicted RBP8.83□□□□□ -1
TMEM260-209ENST00000556079 RTL1A6NKG5 1358 aa8.83□□□□□ -1
TMEM260-209ENST00000556079 EXOC5O00471 708 aa8.82□□□□□ -1
TMEM260-209ENST00000556079 DDX54Q8TDD1 881 aaKnown RBP8.82□□□□□ -1
TMEM260-209ENST00000556079 CEP350Q5VT06 3117 aa8.82□□□□□ -1
TMEM260-209ENST00000556079 PTGER2P43116 358 aa8.81□□□□□ -1
TMEM260-209ENST00000556079 KCNQ4P56696 695 aa8.81□□□□□ -1
TMEM260-209ENST00000556079 TXNRD1Q16881 649 aa8.81□□□□□ -1
TMEM260-209ENST00000556079 POLKQ9UBT6 870 aa8.81□□□□□ -1
TMEM260-209ENST00000556079 INSRP06213 1382 aa8.81□□□□□ -1
TMEM260-209ENST00000556079 FLT4P35916 1363 aa8.81□□□□□ -1
TMEM260-209ENST00000556079 RGPD3A6NKT7 1758 aaPredicted RBP8.81□□□□□ -1
TMEM260-209ENST00000556079 RGPD4Q7Z3J3 1758 aa8.81□□□□□ -1
TMEM260-209ENST00000556079 CASZ1Q86V15 1759 aa8.81□□□□□ -1
TMEM260-209ENST00000556079 CGNL1Q0VF96 1302 aa8.8□□□□□ -1
TMEM260-209ENST00000556079 WASHC2AQ641Q2 1341 aa8.8□□□□□ -1
TMEM260-209ENST00000556079 TUBGCP6Q96RT7 1819 aa8.8□□□□□ -1
TMEM260-209ENST00000556079 PKD1L3Q7Z443 1732 aa8.8□□□□□ -1
TMEM260-209ENST00000556079 NSD2O96028 1365 aa8.79□□□□□ -1
TMEM260-209ENST00000556079 SLC24A1O60721 1099 aa8.79□□□□□ -1
TMEM260-209ENST00000556079 EIF4A2Q14240 407 aaKnown RBP8.79□□□□□ -1
TMEM260-209ENST00000556079 SLC15A2Q16348 729 aa8.79□□□□□ -1
TMEM260-209ENST00000556079 CDCA7Q9BWT1 371 aaPredicted RBP8.79□□□□□ -1
TMEM260-209ENST00000556079 FHDC1Q9C0D6 1143 aaPredicted RBP8.79□□□□□ -1
TMEM260-209ENST00000556079 STK32BQ9NY57 414 aa8.79□□□□□ -1
TMEM260-209ENST00000556079 ITGB4P16144 1822 aa8.79□□□□□ -1
TMEM260-209ENST00000556079 PAPPAQ13219 1627 aa8.79□□□□□ -1
TMEM260-209ENST00000556079 ZNF784Q8NCA9 323 aaPredicted RBP8.78□□□□□ -1
TMEM260-209ENST00000556079 EYA1Q99502 592 aa8.78□□□□□ -1
TMEM260-209ENST00000556079 SYT17Q9BSW7 474 aa8.78□□□□□ -1
TMEM260-209ENST00000556079 BCL9O00512 1426 aa8.78□□□□□ -1
TMEM260-209ENST00000556079 SMG6Q86US8 1419 aaKnown RBP8.78□□□□□ -1
TMEM260-209ENST00000556079 CYP27B1O15528 508 aa8.77□□□□□ -1.01
TMEM260-209ENST00000556079 PRIM1P49642 420 aaKnown RBP8.77□□□□□ -1.01
TMEM260-209ENST00000556079 AMER1Q5JTC6 1135 aaPredicted RBP8.77□□□□□ -1.01
TMEM260-209ENST00000556079 CC2D1BQ5T0F9 858 aaKnown RBP8.77□□□□□ -1.01
TMEM260-209ENST00000556079 AEBP1Q8IUX7 1158 aa8.77□□□□□ -1.01
TMEM260-209ENST00000556079 ZCRB1Q8TBF4 217 aaKnown RBP8.77□□□□□ -1.01
TMEM260-209ENST00000556079 SYTL4Q96C24 671 aaPredicted RBP8.77□□□□□ -1.01
TMEM260-209ENST00000556079 NCAPD2Q15021 1401 aa8.77□□□□□ -1.01
TMEM260-209ENST00000556079 ZNF827Q17R98 1081 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms