RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 APAF1O14727 1248 aa14.7□□□□□ -0.06
SHMT2-220ENST00000555634 IL2RBP14784 551 aa14.7□□□□□ -0.06
SHMT2-220ENST00000555634 CALD1Q05682 793 aaKnown RBP14.7□□□□□ -0.06
SHMT2-220ENST00000555634 PLEKHO1Q53GL0 409 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-220ENST00000555634 TCP11L2Q8N4U5 519 aa14.7□□□□□ -0.06
SHMT2-220ENST00000555634 USP35Q9P2H5 1018 aa14.7□□□□□ -0.06
SHMT2-220ENST00000555634 MEGF6O75095 1541 aa14.7□□□□□ -0.06
SHMT2-220ENST00000555634 CENPBP07199 599 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-220ENST00000555634 NFE2L2Q16236 605 aa14.69□□□□□ -0.06
SHMT2-220ENST00000555634 FNBP4Q8N3X1 1017 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-220ENST00000555634 RTF1Q92541 710 aaKnown RBP14.69□□□□□ -0.06
SHMT2-220ENST00000555634 BCL9LQ86UU0 1499 aa14.69□□□□□ -0.06
SHMT2-220ENST00000555634 PCDH11XQ9BZA7 1347 aa14.68□□□□□ -0.06
SHMT2-220ENST00000555634 PCDH11YQ9BZA8 1340 aa14.68□□□□□ -0.06
SHMT2-220ENST00000555634 NCBP3Q53F19 620 aaKnown RBP14.68□□□□□ -0.06
SHMT2-220ENST00000555634 ZNF772Q68DY9 489 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-220ENST00000555634 PLEKHF1Q96S99 279 aa14.68□□□□□ -0.06
SHMT2-220ENST00000555634 MAP3K5Q99683 1374 aa14.68□□□□□ -0.06
SHMT2-220ENST00000555634 TNS2Q63HR2 1409 aa14.67□□□□□ -0.06
SHMT2-220ENST00000555634 NEUROD2Q15784 382 aa14.67□□□□□ -0.06
SHMT2-220ENST00000555634 VPS72Q15906 364 aa14.67□□□□□ -0.06
SHMT2-220ENST00000555634 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.67□□□□□ -0.06
SHMT2-220ENST00000555634 TRPC5Q9UL62 973 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-220ENST00000555634 THSD7AQ9UPZ6 1657 aa14.67□□□□□ -0.06
SHMT2-220ENST00000555634 SPATA31A1Q5TZJ5 1347 aa14.66□□□□□ -0.06
SHMT2-220ENST00000555634 SPATA31A5Q5VU36 1347 aa14.66□□□□□ -0.06
SHMT2-220ENST00000555634 SPATA31A7Q8IWB4 1347 aa14.66□□□□□ -0.06
SHMT2-220ENST00000555634 A0A0G2JS52 829 aa14.66□□□□□ -0.06
SHMT2-220ENST00000555634 TMPOP42166 694 aaKnown RBP14.66□□□□□ -0.06
SHMT2-220ENST00000555634 RIPK4P57078 832 aa14.66□□□□□ -0.06
SHMT2-220ENST00000555634 MYT1Q01538 1121 aa14.66□□□□□ -0.06
SHMT2-220ENST00000555634 ZNF530Q6P9A1 599 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-220ENST00000555634 PHF23Q9BUL5 403 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-220ENST00000555634 ATRNO75882 1429 aa14.66□□□□□ -0.06
SHMT2-220ENST00000555634 GLI3P10071 1580 aa14.65□□□□□ -0.06
SHMT2-220ENST00000555634 HSP90AB1P08238 724 aaKnown RBP14.65□□□□□ -0.06
SHMT2-220ENST00000555634 CCDC27Q2M243 656 aa14.65□□□□□ -0.06
SHMT2-220ENST00000555634 DOT1LQ8TEK3 1739 aa14.65□□□□□ -0.06
SHMT2-220ENST00000555634 GNAT3A8MTJ3 354 aa14.64□□□□□ -0.07
SHMT2-220ENST00000555634 PDE3BQ13370 1112 aa14.64□□□□□ -0.07
SHMT2-220ENST00000555634 RRP7AQ9Y3A4 280 aaKnown RBP14.64□□□□□ -0.07
SHMT2-220ENST00000555634 SALL2Q9Y467 1007 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-220ENST00000555634 SIPA1L3O60292 1781 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-220ENST00000555634 DISP2A7MBM2 1401 aa14.64□□□□□ -0.07
SHMT2-220ENST00000555634 ADAMTS7Q9UKP4 1686 aa14.64□□□□□ -0.07
SHMT2-220ENST00000555634 HTATSF1O43719 755 aaKnown RBP14.63□□□□□ -0.07
SHMT2-220ENST00000555634 AKAP4Q5JQC9 854 aa14.63□□□□□ -0.07
SHMT2-220ENST00000555634 BARGINQ6ZT62 677 aa14.63□□□□□ -0.07
SHMT2-220ENST00000555634 MTHFSDQ2M296 383 aaKnown RBP14.62□□□□□ -0.07
SHMT2-220ENST00000555634 IFNL2Q8IZJ0 200 aa14.62□□□□□ -0.07
SHMT2-220ENST00000555634 ZCRB1Q8TBF4 217 aaKnown RBP14.62□□□□□ -0.07
SHMT2-220ENST00000555634 PHACTR3Q96KR7 559 aa14.62□□□□□ -0.07
SHMT2-220ENST00000555634 ITGB4P16144 1822 aa14.61□□□□□ -0.07
SHMT2-220ENST00000555634 KDM3BQ7LBC6 1761 aa14.6□□□□□ -0.07
SHMT2-220ENST00000555634 GOLGA2Q08379 1002 aa14.6□□□□□ -0.07
SHMT2-220ENST00000555634 DDB1Q16531 1140 aa14.6□□□□□ -0.07
SHMT2-220ENST00000555634 WDR63Q8IWG1 891 aa14.6□□□□□ -0.07
SHMT2-220ENST00000555634 MYH16Q9H6N6 1097 aa14.6□□□□□ -0.07
SHMT2-220ENST00000555634 KAT6BQ8WYB5 2073 aa14.6□□□□□ -0.07
SHMT2-220ENST00000555634 EXOC5O00471 708 aa14.59□□□□□ -0.07
SHMT2-220ENST00000555634 TEFQ10587 303 aa14.59□□□□□ -0.07
SHMT2-220ENST00000555634 FAM98CQ17RN3 349 aaKnown RBP14.59□□□□□ -0.07
SHMT2-220ENST00000555634 WWC1Q8IX03 1113 aa14.59□□□□□ -0.07
SHMT2-220ENST00000555634 GJD4Q96KN9 370 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-220ENST00000555634 IL16Q14005 1332 aa14.59□□□□□ -0.07
SHMT2-220ENST00000555634 BRWD3Q6RI45 1802 aa14.59□□□□□ -0.07
SHMT2-220ENST00000555634 TOGARAM1Q9Y4F4 1720 aa14.58□□□□□ -0.07
SHMT2-220ENST00000555634 MRC1P22897 1456 aa14.58□□□□□ -0.08
SHMT2-220ENST00000555634 SENP3-EIF4A1A0A087X0R7 540 aa14.58□□□□□ -0.08
SHMT2-220ENST00000555634 E9PSI1 815 aa14.58□□□□□ -0.08
SHMT2-220ENST00000555634 QTRT2Q9H974 415 aaKnown RBP14.58□□□□□ -0.08
SHMT2-220ENST00000555634 DCAF5Q96JK2 942 aa14.57□□□□□ -0.08
SHMT2-220ENST00000555634 PHKG2P15735 406 aa14.56□□□□□ -0.08
SHMT2-220ENST00000555634 GNAI1P63096 354 aa14.56□□□□□ -0.08
SHMT2-220ENST00000555634 DDX54Q8TDD1 881 aaKnown RBP14.56□□□□□ -0.08
SHMT2-220ENST00000555634 PAPPAQ13219 1627 aa14.55□□□□□ -0.08
SHMT2-220ENST00000555634 NHSQ6T4R5 1651 aa14.55□□□□□ -0.08
SHMT2-220ENST00000555634 RBM6P78332 1123 aaKnown RBP14.55□□□□□ -0.08
SHMT2-220ENST00000555634 IFT57Q9NWB7 429 aa14.55□□□□□ -0.08
SHMT2-220ENST00000555634 TRIM35Q9UPQ4 493 aa14.55□□□□□ -0.08
SHMT2-220ENST00000555634 LAS1LQ9Y4W2 734 aaKnown RBP14.55□□□□□ -0.08
SHMT2-220ENST00000555634 ZNF521Q96K83 1311 aa14.55□□□□□ -0.08
SHMT2-220ENST00000555634 LAMB4A4D0S4 1761 aa14.55□□□□□ -0.08
SHMT2-220ENST00000555634 MCM10Q7L590 875 aa14.54□□□□□ -0.08
SHMT2-220ENST00000555634 CEMIPQ8WUJ3 1361 aa14.54□□□□□ -0.08
SHMT2-220ENST00000555634 SBF2Q86WG5 1849 aa14.54□□□□□ -0.08
SHMT2-220ENST00000555634 UBR2Q8IWV8 1755 aa14.53□□□□□ -0.08
SHMT2-220ENST00000555634 KDM6AO15550 1401 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-220ENST00000555634 MPRIPQ6WCQ1 1025 aa14.53□□□□□ -0.08
SHMT2-220ENST00000555634 RXRBP28702 533 aa14.52□□□□□ -0.09
SHMT2-220ENST00000555634 CABP4P57796 275 aa14.52□□□□□ -0.09
SHMT2-220ENST00000555634 BABAM1Q9NWV8 329 aa14.52□□□□□ -0.09
SHMT2-220ENST00000555634 CACNA1FO60840 1977 aa14.52□□□□□ -0.09
SHMT2-220ENST00000555634 CYP27B1O15528 508 aa14.51□□□□□ -0.09
SHMT2-220ENST00000555634 RNMTO43148 476 aaKnown RBP14.51□□□□□ -0.09
SHMT2-220ENST00000555634 DCTN1Q14203 1278 aa14.51□□□□□ -0.09
SHMT2-220ENST00000555634 CFAP44Q96MT7 982 aa14.51□□□□□ -0.09
SHMT2-220ENST00000555634 TSPYL4Q9UJ04 414 aa14.51□□□□□ -0.09
SHMT2-220ENST00000555634 ERVV-2B6SEH9 535 aa14.5□□□□□ -0.09
SHMT2-220ENST00000555634 TTC5Q8N0Z6 440 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 145.6 ms