RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 MTHFSP49914 203 aa16.82■□□□□ 0.28
SYNE2-214ENST00000554928 NCAPD2Q15021 1401 aa16.81■□□□□ 0.28
SYNE2-214ENST00000554928 FAM196AQ6ZSG2 479 aa16.81■□□□□ 0.28
SYNE2-214ENST00000554928 OVOS2A0A0G2JMS6 1433 aa16.79■□□□□ 0.28
SYNE2-214ENST00000554928 IL13P35225 146 aa16.78■□□□□ 0.28
SYNE2-214ENST00000554928 AEBP1Q8IUX7 1158 aa16.78■□□□□ 0.28
SYNE2-214ENST00000554928 CCDC125Q86Z20 511 aa16.77■□□□□ 0.28
SYNE2-214ENST00000554928 DDX54Q8TDD1 881 aaKnown RBP16.77■□□□□ 0.28
SYNE2-214ENST00000554928 SHANK3Q9BYB0 1731 aa16.76■□□□□ 0.27
SYNE2-214ENST00000554928 TNS1Q9HBL0 1735 aaKnown RBP16.76■□□□□ 0.27
SYNE2-214ENST00000554928 IGSF1Q8N6C5 1336 aa16.76■□□□□ 0.27
SYNE2-214ENST00000554928 COL3A1P02461 1466 aaPredicted RBP16.76■□□□□ 0.27
SYNE2-214ENST00000554928 KCNQ2O43526 872 aa16.76■□□□□ 0.27
SYNE2-214ENST00000554928 ZCRB1Q8TBF4 217 aaKnown RBP16.76■□□□□ 0.27
SYNE2-214ENST00000554928 RAPGEF4Q8WZA2 1011 aa16.76■□□□□ 0.27
SYNE2-214ENST00000554928 TATP17735 454 aaPredicted RBP16.75■□□□□ 0.27
SYNE2-214ENST00000554928 PPP2R1AP30153 589 aa16.75■□□□□ 0.27
SYNE2-214ENST00000554928 EN1Q05925 392 aaPredicted RBP16.75■□□□□ 0.27
SYNE2-214ENST00000554928 ACSBG1Q96GR2 724 aa16.75■□□□□ 0.27
SYNE2-214ENST00000554928 BCL9O00512 1426 aa16.74■□□□□ 0.27
SYNE2-214ENST00000554928 SF3B2Q13435 895 aaKnown RBP16.73■□□□□ 0.27
SYNE2-214ENST00000554928 PARD3Q8TEW0 1356 aa16.73■□□□□ 0.27
SYNE2-214ENST00000554928 RGPD1P0DJD0 1748 aa16.73■□□□□ 0.27
SYNE2-214ENST00000554928 CYP27B1O15528 508 aa16.72■□□□□ 0.27
SYNE2-214ENST00000554928 APBA3O96018 575 aa16.72■□□□□ 0.27
SYNE2-214ENST00000554928 EZH2Q15910 746 aaKnown RBP16.72■□□□□ 0.27
SYNE2-214ENST00000554928 SBF2Q86WG5 1849 aa16.71■□□□□ 0.27
SYNE2-214ENST00000554928 BAG6P46379 1132 aa16.71■□□□□ 0.27
SYNE2-214ENST00000554928 SULT6B1Q6IMI4 303 aa16.71■□□□□ 0.27
SYNE2-214ENST00000554928 DIAPH1O60610 1272 aaKnown RBP16.7■□□□□ 0.26
SYNE2-214ENST00000554928 HMOX1P09601 288 aa16.7■□□□□ 0.26
SYNE2-214ENST00000554928 CAMKK2Q96RR4 588 aa16.7■□□□□ 0.26
SYNE2-214ENST00000554928 BCL11BQ9C0K0 894 aaPredicted RBP16.7■□□□□ 0.26
SYNE2-214ENST00000554928 ZNF316A6NFI3 1004 aaPredicted RBP16.69■□□□□ 0.26
SYNE2-214ENST00000554928 PKD1L3Q7Z443 1732 aa16.69■□□□□ 0.26
SYNE2-214ENST00000554928 KDRP35968 1356 aa16.68■□□□□ 0.26
SYNE2-214ENST00000554928 PCDH11XQ9BZA7 1347 aa16.68■□□□□ 0.26
SYNE2-214ENST00000554928 PCDH11YQ9BZA8 1340 aa16.68■□□□□ 0.26
SYNE2-214ENST00000554928 NHSQ6T4R5 1651 aa16.67■□□□□ 0.26
SYNE2-214ENST00000554928 KCNA4P22459 653 aa16.67■□□□□ 0.26
SYNE2-214ENST00000554928 PRIM1P49642 420 aaKnown RBP16.66■□□□□ 0.26
SYNE2-214ENST00000554928 DOT1LQ8TEK3 1739 aa16.65■□□□□ 0.26
SYNE2-214ENST00000554928 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
SYNE2-214ENST00000554928 PHKG2P15735 406 aa16.65■□□□□ 0.26
SYNE2-214ENST00000554928 PROM2Q8N271 834 aa16.65■□□□□ 0.26
SYNE2-214ENST00000554928 SPG7Q9UQ90 795 aa16.65■□□□□ 0.26
SYNE2-214ENST00000554928 SYTL4Q96C24 671 aaPredicted RBP16.64■□□□□ 0.25
SYNE2-214ENST00000554928 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.64■□□□□ 0.25
SYNE2-214ENST00000554928 TOGARAM1Q9Y4F4 1720 aa16.64■□□□□ 0.25
SYNE2-214ENST00000554928 NKX1-1Q15270 411 aaPredicted RBP16.63■□□□□ 0.25
SYNE2-214ENST00000554928 ZNF530Q6P9A1 599 aaPredicted RBP16.62■□□□□ 0.25
SYNE2-214ENST00000554928 CFAP53Q96M91 514 aa16.62■□□□□ 0.25
SYNE2-214ENST00000554928 PLSCR1O15162 318 aa16.61■□□□□ 0.25
SYNE2-214ENST00000554928 RALBP1Q15311 655 aa16.61■□□□□ 0.25
SYNE2-214ENST00000554928 PLEKHO1Q53GL0 409 aaPredicted RBP16.61■□□□□ 0.25
SYNE2-214ENST00000554928 IFNL2Q8IZJ0 200 aa16.61■□□□□ 0.25
SYNE2-214ENST00000554928 BTAF1O14981 1849 aa16.61■□□□□ 0.25
SYNE2-214ENST00000554928 RREB1Q92766 1687 aa16.6■□□□□ 0.25
SYNE2-214ENST00000554928 MTHFSDQ2M296 383 aaKnown RBP16.6■□□□□ 0.25
SYNE2-214ENST00000554928 PRKRIP1Q9H875 184 aaPredicted RBP16.6■□□□□ 0.25
SYNE2-214ENST00000554928 KDM6AO15550 1401 aaPredicted RBP16.6■□□□□ 0.25
SYNE2-214ENST00000554928 PSDA5PKW4 1024 aaPredicted RBP16.59■□□□□ 0.25
SYNE2-214ENST00000554928 KCNQ4P56696 695 aa16.59■□□□□ 0.25
SYNE2-214ENST00000554928 TXNRD1Q16881 649 aa16.59■□□□□ 0.25
SYNE2-214ENST00000554928 RSPH6AQ9H0K4 717 aa16.59■□□□□ 0.25
SYNE2-214ENST00000554928 PLEKHG2Q9H7P9 1386 aa16.59■□□□□ 0.25
SYNE2-214ENST00000554928 NUP188Q5SRE5 1749 aa16.59■□□□□ 0.25
SYNE2-214ENST00000554928 U2AF1L5P0DN76 240 aaPredicted RBP16.58■□□□□ 0.24
SYNE2-214ENST00000554928 U2AF1Q01081 240 aaKnown RBP eCLIP16.58■□□□□ 0.24
SYNE2-214ENST00000554928 AMOTQ4VCS5 1084 aa16.58■□□□□ 0.24
SYNE2-214ENST00000554928 MPRIPQ6WCQ1 1025 aa16.58■□□□□ 0.24
SYNE2-214ENST00000554928 PHACTR3Q96KR7 559 aa16.58■□□□□ 0.24
SYNE2-214ENST00000554928 ANO8Q9HCE9 1232 aaPredicted RBP16.58■□□□□ 0.24
SYNE2-214ENST00000554928 MYBBP1AQ9BQG0 1328 aaKnown RBP16.58■□□□□ 0.24
SYNE2-214ENST00000554928 PRKAR2BP31323 418 aa16.57■□□□□ 0.24
SYNE2-214ENST00000554928 PIGBQ92521 554 aa16.57■□□□□ 0.24
SYNE2-214ENST00000554928 LRRC4BQ9NT99 713 aa16.57■□□□□ 0.24
SYNE2-214ENST00000554928 R3HDM1Q15032 1099 aaKnown RBP16.56■□□□□ 0.24
SYNE2-214ENST00000554928 KAT6BQ8WYB5 2073 aa16.56■□□□□ 0.24
SYNE2-214ENST00000554928 LGR6Q9HBX8 967 aa16.55■□□□□ 0.24
SYNE2-214ENST00000554928 NUDCQ9Y266 331 aa16.55■□□□□ 0.24
SYNE2-214ENST00000554928 RGPD3A6NKT7 1758 aaPredicted RBP16.55■□□□□ 0.24
SYNE2-214ENST00000554928 RGPD4Q7Z3J3 1758 aa16.55■□□□□ 0.24
SYNE2-214ENST00000554928 C1orf141Q5JVX7 400 aa16.54■□□□□ 0.24
SYNE2-214ENST00000554928 CCDC184Q52MB2 194 aa16.53■□□□□ 0.24
SYNE2-214ENST00000554928 AKAP4Q5JQC9 854 aa16.53■□□□□ 0.24
SYNE2-214ENST00000554928 DCAF5Q96JK2 942 aa16.53■□□□□ 0.24
SYNE2-214ENST00000554928 ASAP1Q9ULH1 1129 aa16.53■□□□□ 0.24
SYNE2-214ENST00000554928 ITGB4P16144 1822 aa16.53■□□□□ 0.24
SYNE2-214ENST00000554928 TMOD3Q9NYL9 352 aa16.52■□□□□ 0.24
SYNE2-214ENST00000554928 PALLDQ8WX93 1383 aa16.51■□□□□ 0.23
SYNE2-214ENST00000554928 HSP90AB1P08238 724 aaKnown RBP16.51■□□□□ 0.23
SYNE2-214ENST00000554928 ZNF827Q17R98 1081 aa16.51■□□□□ 0.23
SYNE2-214ENST00000554928 ATG3Q9NT62 314 aa16.51■□□□□ 0.23
SYNE2-214ENST00000554928 PAPPAQ13219 1627 aa16.51■□□□□ 0.23
SYNE2-214ENST00000554928 ERVV-2B6SEH9 535 aa16.5■□□□□ 0.23
SYNE2-214ENST00000554928 RNMTO43148 476 aaKnown RBP16.5■□□□□ 0.23
SYNE2-214ENST00000554928 FCHSD2O94868 740 aa16.5■□□□□ 0.23
SYNE2-214ENST00000554928 PLEKHF1Q96S99 279 aa16.5■□□□□ 0.23
SYNE2-214ENST00000554928 PDGFDQ9GZP0 370 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms