RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 BMP2P12643 396 aa3.28□□□□□ -1.89
PRPF39-208ENST00000554785 ADD1P35611 737 aaKnown RBP3.28□□□□□ -1.89
PRPF39-208ENST00000554785 Q6ZVU0 165 aa3.28□□□□□ -1.89
PRPF39-208ENST00000554785 KDF1Q8NAX2 398 aaPredicted RBP3.28□□□□□ -1.89
PRPF39-208ENST00000554785 SOS2Q07890 1332 aaPredicted RBP3.27□□□□□ -1.89
PRPF39-208ENST00000554785 ARID1BQ8NFD5 2236 aaPredicted RBP3.27□□□□□ -1.89
PRPF39-208ENST00000554785 ERVH48-1M5A8F1 160 aa3.27□□□□□ -1.89
PRPF39-208ENST00000554785 LILRA1O75019 489 aa3.27□□□□□ -1.89
PRPF39-208ENST00000554785 MARSP56192 900 aaKnown RBP3.27□□□□□ -1.89
PRPF39-208ENST00000554785 ZNF784Q8NCA9 323 aaPredicted RBP3.27□□□□□ -1.89
PRPF39-208ENST00000554785 ENAMQ9NRM1 1142 aa3.27□□□□□ -1.89
PRPF39-208ENST00000554785 FIGNL2A6NMB9 653 aa3.26□□□□□ -1.89
PRPF39-208ENST00000554785 ESPNB1AK53 854 aa3.26□□□□□ -1.89
PRPF39-208ENST00000554785 GIGYF1O75420 1035 aaPredicted RBP3.26□□□□□ -1.89
PRPF39-208ENST00000554785 RGS19P49795 217 aa3.26□□□□□ -1.89
PRPF39-208ENST00000554785 ZNF395Q9H8N7 513 aaPredicted RBP3.26□□□□□ -1.89
PRPF39-208ENST00000554785 ZBBXA8MT70 800 aa3.26□□□□□ -1.89
PRPF39-208ENST00000554785 PHF20L1A8MW92 1017 aa3.26□□□□□ -1.89
PRPF39-208ENST00000554785 CTSOP43234 321 aaPredicted RBP3.26□□□□□ -1.89
PRPF39-208ENST00000554785 RELBQ01201 579 aa3.26□□□□□ -1.89
PRPF39-208ENST00000554785 DZIP3Q86Y13 1208 aaKnown RBP3.26□□□□□ -1.89
PRPF39-208ENST00000554785 CDV3Q9UKY7 258 aaKnown RBP3.26□□□□□ -1.89
PRPF39-208ENST00000554785 SPINT1O43278 529 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 NBPF20Q3BBV1 942 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 BANK1Q8NDB2 785 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 INSM2Q96T92 566 aaPredicted RBP3.25□□□□□ -1.89
PRPF39-208ENST00000554785 PGPEP1Q9NXJ5 209 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 TBC1D2BQ9UPU7 963 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 TTLL8A6PVC2 850 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 MAP3K10Q02779 954 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 FZD5Q13467 585 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 GMCL1Q96IK5 515 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 CNTNAP3BQ96NU0 1288 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 CNTNAP3Q9BZ76 1288 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 PCDHB9Q9Y5E1 797 aa3.25□□□□□ -1.89
PRPF39-208ENST00000554785 SCTRP47872 440 aa3.24□□□□□ -1.89
PRPF39-208ENST00000554785 DHX9Q08211 1270 aaKnown RBP3.24□□□□□ -1.89
PRPF39-208ENST00000554785 SV2AQ7L0J3 742 aa3.24□□□□□ -1.89
PRPF39-208ENST00000554785 ALYREFQ86V81 257 aaKnown RBP3.24□□□□□ -1.89
PRPF39-208ENST00000554785 SVOPQ8N4V2 548 aa3.24□□□□□ -1.89
PRPF39-208ENST00000554785 GALNT6Q8NCL4 622 aa3.24□□□□□ -1.89
PRPF39-208ENST00000554785 CYLDQ9NQC7 956 aa3.24□□□□□ -1.89
PRPF39-208ENST00000554785 ARHGEF15O94989 841 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 PTSQ03393 145 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 NR1H3Q13133 447 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 IRF5Q13568 498 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 PLA2G4EQ3MJ16 856 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 TSGA10IPQ3SY00 556 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 ZNF385CQ66K41 422 aaPredicted RBP3.23□□□□□ -1.89
PRPF39-208ENST00000554785 GPR161Q8N6U8 529 aaKnown RBP3.23□□□□□ -1.89
PRPF39-208ENST00000554785 PNMA1Q8ND90 353 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 NDUFB9Q9Y6M9 179 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 SENP3-EIF4A1A0A087X0R7 540 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 ADH1AP07327 375 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 FOXD4L5Q5VV16 416 aaPredicted RBP3.23□□□□□ -1.89
PRPF39-208ENST00000554785 COL25A1Q9BXS0 654 aaPredicted RBP3.23□□□□□ -1.89
PRPF39-208ENST00000554785 LRRC4BQ9NT99 713 aa3.23□□□□□ -1.89
PRPF39-208ENST00000554785 SRSF11Q05519 484 aaKnown RBP3.22□□□□□ -1.89
PRPF39-208ENST00000554785 SEPT12Q8IYM1 358 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 RNF217Q8TC41 542 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 CDCA7Q9BWT1 371 aaPredicted RBP3.22□□□□□ -1.89
PRPF39-208ENST00000554785 GDPD2Q9HCC8 539 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 SLC35F4A4IF30 521 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 SOCS7O14512 581 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 PTGIRP43119 386 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 KRT76Q01546 638 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 TMEM132AQ24JP5 1023 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 PODNQ7Z5L7 613 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 CCDC155Q8N6L0 562 aa3.22□□□□□ -1.89
PRPF39-208ENST00000554785 CCDC85AQ96PX6 553 aaPredicted RBP3.22□□□□□ -1.89
PRPF39-208ENST00000554785 POLMQ9NP87 494 aaPredicted RBP3.22□□□□□ -1.89
PRPF39-208ENST00000554785 STAU1O95793 577 aaKnown RBP3.21□□□□□ -1.9
PRPF39-208ENST00000554785 PROCP04070 461 aa3.21□□□□□ -1.9
PRPF39-208ENST00000554785 ERVK-9P63128 1117 aa3.21□□□□□ -1.9
PRPF39-208ENST00000554785 VAC14Q08AM6 782 aa3.21□□□□□ -1.9
PRPF39-208ENST00000554785 BEND7Q8N7W2 519 aaPredicted RBP3.21□□□□□ -1.9
PRPF39-208ENST00000554785 CEP126Q9P2H0 1117 aa3.21□□□□□ -1.9
PRPF39-208ENST00000554785 A0A1W2PRU2 124 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 ITGA6P23229 1130 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 MCM6Q14566 821 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 FOXR1Q6PIV2 292 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 PRICKLE2Q7Z3G6 844 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 OSBPL3Q9H4L5 887 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 CUEDC1Q9NWM3 386 aaPredicted RBP3.2□□□□□ -1.9
PRPF39-208ENST00000554785 PCDHB11Q9Y5F2 797 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 ATP5J2-PTCD1G3V325 749 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 TRAK2O60296 914 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 RHOQP17081 205 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 RNFT1Q5M7Z0 435 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 CCDC125Q86Z20 511 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 PHTF2Q8N3S3 785 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 RAB6BQ9NRW1 208 aa3.2□□□□□ -1.9
PRPF39-208ENST00000554785 MEN1O00255 615 aa3.19□□□□□ -1.9
PRPF39-208ENST00000554785 PIK3R2O00459 728 aa3.19□□□□□ -1.9
PRPF39-208ENST00000554785 ABL2P42684 1182 aa3.19□□□□□ -1.9
PRPF39-208ENST00000554785 CC2D2BQ6DHV5 1058 aa3.19□□□□□ -1.9
PRPF39-208ENST00000554785 POM121Q96HA1 1249 aa3.19□□□□□ -1.9
PRPF39-208ENST00000554785 NSFL1CQ9UNZ2 370 aaKnown RBP3.19□□□□□ -1.9
PRPF39-208ENST00000554785 TXKP42681 527 aa3.19□□□□□ -1.9
PRPF39-208ENST00000554785 RNF144AP50876 292 aaPredicted RBP3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms