RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 USP17L1Q7RTZ2 530 aa9.95□□□□□ -0.82
SCFD1-211ENST00000554437 LILRA1O75019 489 aa9.94□□□□□ -0.82
SCFD1-211ENST00000554437 ERVK-9P63128 1117 aa9.94□□□□□ -0.82
SCFD1-211ENST00000554437 CFAP70Q5T0N1 1121 aa9.94□□□□□ -0.82
SCFD1-211ENST00000554437 PLEKHM2Q8IWE5 1019 aa9.94□□□□□ -0.82
SCFD1-211ENST00000554437 SIRT1Q96EB6 747 aa9.94□□□□□ -0.82
SCFD1-211ENST00000554437 ADD1P35611 737 aaKnown RBP9.93□□□□□ -0.82
SCFD1-211ENST00000554437 CBLBQ13191 982 aa9.93□□□□□ -0.82
SCFD1-211ENST00000554437 CTC1Q2NKJ3 1217 aa9.93□□□□□ -0.82
SCFD1-211ENST00000554437 AXIN1O15169 862 aa9.92□□□□□ -0.82
SCFD1-211ENST00000554437 NOD1Q9Y239 953 aa9.92□□□□□ -0.82
SCFD1-211ENST00000554437 SMCPP49901 116 aaPredicted RBP9.9□□□□□ -0.82
SCFD1-211ENST00000554437 Q6ZVU0 165 aa9.9□□□□□ -0.82
SCFD1-211ENST00000554437 OSBPL3Q9H4L5 887 aa9.9□□□□□ -0.82
SCFD1-211ENST00000554437 MKRN1Q9UHC7 482 aaKnown RBP9.9□□□□□ -0.82
SCFD1-211ENST00000554437 ST8SIA5O15466 376 aa9.89□□□□□ -0.83
SCFD1-211ENST00000554437 ADH1AP07327 375 aa9.89□□□□□ -0.83
SCFD1-211ENST00000554437 CRIPAKQ8N1N5 446 aa9.89□□□□□ -0.83
SCFD1-211ENST00000554437 MEIOBQ8N635 442 aa9.89□□□□□ -0.83
SCFD1-211ENST00000554437 VRTNQ9H8Y1 702 aa9.89□□□□□ -0.83
SCFD1-211ENST00000554437 GTF2IP78347 998 aa9.88□□□□□ -0.83
SCFD1-211ENST00000554437 CDCA8Q53HL2 280 aa9.88□□□□□ -0.83
SCFD1-211ENST00000554437 CYP2U1Q7Z449 544 aa9.88□□□□□ -0.83
SCFD1-211ENST00000554437 TRIM50Q86XT4 487 aa9.88□□□□□ -0.83
SCFD1-211ENST00000554437 AGBL1Q96MI9 1066 aa9.88□□□□□ -0.83
SCFD1-211ENST00000554437 AAASQ9NRG9 546 aa9.88□□□□□ -0.83
SCFD1-211ENST00000554437 ATP5J2-PTCD1G3V325 749 aa9.87□□□□□ -0.83
SCFD1-211ENST00000554437 UPP2O95045 317 aa9.87□□□□□ -0.83
SCFD1-211ENST00000554437 RELBQ01201 579 aa9.87□□□□□ -0.83
SCFD1-211ENST00000554437 STK17AQ9UEE5 414 aa9.87□□□□□ -0.83
SCFD1-211ENST00000554437 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.86□□□□□ -0.83
SCFD1-211ENST00000554437 LOC100996750A0A140TA64 210 aa9.86□□□□□ -0.83
SCFD1-211ENST00000554437 ATP1A2P50993 1020 aa9.86□□□□□ -0.83
SCFD1-211ENST00000554437 PSME1Q06323 249 aa9.86□□□□□ -0.83
SCFD1-211ENST00000554437 KANK4Q5T7N3 995 aaPredicted RBP9.86□□□□□ -0.83
SCFD1-211ENST00000554437 TSEN34Q9BSV6 310 aaKnown RBP9.86□□□□□ -0.83
SCFD1-211ENST00000554437 KRTAP4-6Q9BYQ5 205 aa9.86□□□□□ -0.83
SCFD1-211ENST00000554437 WFS1O76024 890 aa9.85□□□□□ -0.83
SCFD1-211ENST00000554437 BMP1P13497 986 aa9.85□□□□□ -0.83
SCFD1-211ENST00000554437 RASA1P20936 1047 aa9.85□□□□□ -0.83
SCFD1-211ENST00000554437 MRPL14Q6P1L8 145 aaKnown RBP9.85□□□□□ -0.83
SCFD1-211ENST00000554437 OGFOD1Q8N543 542 aa9.85□□□□□ -0.83
SCFD1-211ENST00000554437 PCDHGA11Q9Y5H2 935 aa9.85□□□□□ -0.83
SCFD1-211ENST00000554437 PTGIRP43119 386 aa9.84□□□□□ -0.83
SCFD1-211ENST00000554437 SCARF1Q14162 830 aa9.84□□□□□ -0.83
SCFD1-211ENST00000554437 C6orf118Q5T5N4 469 aa9.84□□□□□ -0.83
SCFD1-211ENST00000554437 LARP1Q6PKG0 1096 aaKnown RBP9.84□□□□□ -0.83
SCFD1-211ENST00000554437 LINC00528Q8N1L1 170 aa9.84□□□□□ -0.83
SCFD1-211ENST00000554437 PBXIP1Q96AQ6 731 aa9.84□□□□□ -0.83
SCFD1-211ENST00000554437 ZNF395Q9H8N7 513 aaPredicted RBP9.84□□□□□ -0.83
SCFD1-211ENST00000554437 DNAAF2Q9NVR5 837 aaKnown RBP9.84□□□□□ -0.83
SCFD1-211ENST00000554437 GNRH1P01148 92 aa9.83□□□□□ -0.84
SCFD1-211ENST00000554437 BMP2P12643 396 aa9.83□□□□□ -0.84
SCFD1-211ENST00000554437 CLDN10P78369 228 aa9.83□□□□□ -0.84
SCFD1-211ENST00000554437 KDF1Q8NAX2 398 aaPredicted RBP9.83□□□□□ -0.84
SCFD1-211ENST00000554437 ARHGEF10LQ9HCE6 1279 aa9.83□□□□□ -0.84
SCFD1-211ENST00000554437 SRPK2P78362 688 aaKnown RBP9.82□□□□□ -0.84
SCFD1-211ENST00000554437 TRIM46Q7Z4K8 759 aa9.82□□□□□ -0.84
SCFD1-211ENST00000554437 ZNF594Q96JF6 807 aaPredicted RBP9.82□□□□□ -0.84
SCFD1-211ENST00000554437 PURBQ96QR8 312 aaKnown RBP9.82□□□□□ -0.84
SCFD1-211ENST00000554437 RAB6BQ9NRW1 208 aa9.82□□□□□ -0.84
SCFD1-211ENST00000554437 DACH1Q9UI36 760 aa9.82□□□□□ -0.84
SCFD1-211ENST00000554437 A0A1W2PRU2 124 aa9.81□□□□□ -0.84
SCFD1-211ENST00000554437 MEN1O00255 615 aa9.81□□□□□ -0.84
SCFD1-211ENST00000554437 ZBTB7BO15156 539 aaPredicted RBP9.81□□□□□ -0.84
SCFD1-211ENST00000554437 STAU1O95793 577 aaKnown RBP9.81□□□□□ -0.84
SCFD1-211ENST00000554437 CRTC2Q53ET0 693 aaPredicted RBP9.81□□□□□ -0.84
SCFD1-211ENST00000554437 LARGE2Q8N3Y3 721 aa9.81□□□□□ -0.84
SCFD1-211ENST00000554437 ATP13A2Q9NQ11 1180 aa9.81□□□□□ -0.84
SCFD1-211ENST00000554437 KIAA1024Q9UPX6 916 aa9.81□□□□□ -0.84
SCFD1-211ENST00000554437 FAM196BA6NMK8 535 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L15C9J2P7 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L10C9JJH3 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L13C9JLJ4 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L12C9JPN9 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L11C9JVI0 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L21D6R901 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L18D6R9N7 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L22D6RA61 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L17D6RBQ6 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L19D6RCP7 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L20D6RJB6 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 PPP1R15AO75807 674 aaPredicted RBP9.8□□□□□ -0.84
SCFD1-211ENST00000554437 USP17L24Q0WX57 530 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 ESCO1Q5FWF5 840 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 CCDC102BQ68D86 513 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 TPCN2Q8NHX9 752 aa9.8□□□□□ -0.84
SCFD1-211ENST00000554437 RBM19Q9Y4C8 960 aaKnown RBP9.8□□□□□ -0.84
SCFD1-211ENST00000554437 SPINT1O43278 529 aa9.79□□□□□ -0.84
SCFD1-211ENST00000554437 GDF10P55107 478 aa9.79□□□□□ -0.84
SCFD1-211ENST00000554437 PTK7Q13308 1070 aa9.79□□□□□ -0.84
SCFD1-211ENST00000554437 NLRP3Q96P20 1036 aa9.79□□□□□ -0.84
SCFD1-211ENST00000554437 INSM2Q96T92 566 aaPredicted RBP9.79□□□□□ -0.84
SCFD1-211ENST00000554437 ETNK1Q9HBU6 452 aa9.79□□□□□ -0.84
SCFD1-211ENST00000554437 ACIN1Q9UKV3 1341 aaKnown RBP9.79□□□□□ -0.84
SCFD1-211ENST00000554437 WIPF1O43516 503 aa9.78□□□□□ -0.84
SCFD1-211ENST00000554437 SCNN1DP51172 638 aa9.78□□□□□ -0.84
SCFD1-211ENST00000554437 NFX1Q12986 1120 aaKnown RBP9.78□□□□□ -0.84
SCFD1-211ENST00000554437 CNKSR1Q969H4 720 aa9.78□□□□□ -0.84
SCFD1-211ENST00000554437 ZFP42Q96MM3 310 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms