RNA–Protein interactions for RNA: ENST00000554384.1

CHD8-207, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 3

Gene CHD8, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-207ENST00000554384 TMEM88BA6NKF7 163 aa9.47□□□□□ -0.89
CHD8-207ENST00000554384 ERVH48-1M5A8F1 160 aa9.47□□□□□ -0.89
CHD8-207ENST00000554384 SCTRP47872 440 aa9.47□□□□□ -0.89
CHD8-207ENST00000554384 PTK7Q13308 1070 aa9.47□□□□□ -0.89
CHD8-207ENST00000554384 TMEM164Q5U3C3 297 aa9.47□□□□□ -0.89
CHD8-207ENST00000554384 OGFOD1Q8N543 542 aa9.47□□□□□ -0.89
CHD8-207ENST00000554384 ZNF594Q96JF6 807 aaPredicted RBP9.47□□□□□ -0.89
CHD8-207ENST00000554384 TMPRSS4Q9NRS4 437 aa9.47□□□□□ -0.89
CHD8-207ENST00000554384 USP17L15C9J2P7 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L10C9JJH3 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L13C9JLJ4 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L12C9JPN9 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L11C9JVI0 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L21D6R901 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L18D6R9N7 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L22D6RA61 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L17D6RBQ6 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L19D6RCP7 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L20D6RJB6 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 ZBTB7BO15156 539 aaPredicted RBP9.46□□□□□ -0.9
CHD8-207ENST00000554384 USP17L24Q0WX57 530 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 RNF20Q5VTR2 975 aa9.46□□□□□ -0.9
CHD8-207ENST00000554384 LARP1Q6PKG0 1096 aaKnown RBP9.46□□□□□ -0.9
CHD8-207ENST00000554384 FSHRP23945 695 aa9.45□□□□□ -0.9
CHD8-207ENST00000554384 CDK15Q96Q40 435 aa9.45□□□□□ -0.9
CHD8-207ENST00000554384 NOD1Q9Y239 953 aa9.45□□□□□ -0.9
CHD8-207ENST00000554384 ATP5J2-PTCD1G3V325 749 aa9.44□□□□□ -0.9
CHD8-207ENST00000554384 LGR5O75473 907 aa9.44□□□□□ -0.9
CHD8-207ENST00000554384 GTF2IP78347 998 aa9.44□□□□□ -0.9
CHD8-207ENST00000554384 DNAAF2Q9NVR5 837 aaKnown RBP9.44□□□□□ -0.9
CHD8-207ENST00000554384 SLAIN2Q9P270 581 aa9.44□□□□□ -0.9
CHD8-207ENST00000554384 CDV3Q9UKY7 258 aaKnown RBP9.44□□□□□ -0.9
CHD8-207ENST00000554384 MAP4K5Q9Y4K4 846 aa9.44□□□□□ -0.9
CHD8-207ENST00000554384 PCDHGA11Q9Y5H2 935 aa9.44□□□□□ -0.9
CHD8-207ENST00000554384 FAM196BA6NMK8 535 aa9.43□□□□□ -0.9
CHD8-207ENST00000554384 LZTS3O60299 673 aaPredicted RBP9.43□□□□□ -0.9
CHD8-207ENST00000554384 STAU1O95793 577 aaKnown RBP9.43□□□□□ -0.9
CHD8-207ENST00000554384 DPYDQ12882 1025 aa9.43□□□□□ -0.9
CHD8-207ENST00000554384 HPS1Q92902 700 aa9.43□□□□□ -0.9
CHD8-207ENST00000554384 ATP13A2Q9NQ11 1180 aa9.43□□□□□ -0.9
CHD8-207ENST00000554384 CYLDQ9NQC7 956 aa9.43□□□□□ -0.9
CHD8-207ENST00000554384 LOC100996750A0A140TA64 210 aa9.42□□□□□ -0.9
CHD8-207ENST00000554384 DKK1O94907 266 aa9.42□□□□□ -0.9
CHD8-207ENST00000554384 NR3C2P08235 984 aa9.42□□□□□ -0.9
CHD8-207ENST00000554384 NFX1Q12986 1120 aaKnown RBP9.42□□□□□ -0.9
CHD8-207ENST00000554384 ELOAQ14241 798 aaKnown RBP9.42□□□□□ -0.9
CHD8-207ENST00000554384 ANKMY2Q8IV38 441 aa9.42□□□□□ -0.9
CHD8-207ENST00000554384 SEPT12Q8IYM1 358 aa9.42□□□□□ -0.9
CHD8-207ENST00000554384 KRTAP4-6Q9BYQ5 205 aa9.42□□□□□ -0.9
CHD8-207ENST00000554384 PODXL2Q9NZ53 605 aa9.42□□□□□ -0.9
CHD8-207ENST00000554384 USTQ9Y2C2 406 aa9.42□□□□□ -0.9
CHD8-207ENST00000554384 WFS1O76024 890 aa9.41□□□□□ -0.9
CHD8-207ENST00000554384 SNRPBP14678 240 aaKnown RBP9.41□□□□□ -0.9
CHD8-207ENST00000554384 USP4Q13107 963 aa9.41□□□□□ -0.9
CHD8-207ENST00000554384 SFI1A8K8P3 1242 aa9.4□□□□□ -0.9
CHD8-207ENST00000554384 ADH1CP00326 375 aa9.4□□□□□ -0.9
CHD8-207ENST00000554384 FAM69CQ0P6D2 419 aa9.4□□□□□ -0.9
CHD8-207ENST00000554384 TRIM50Q86XT4 487 aa9.4□□□□□ -0.9
CHD8-207ENST00000554384 TPCN2Q8NHX9 752 aa9.4□□□□□ -0.9
CHD8-207ENST00000554384 FAM200AQ8TCP9 573 aa9.4□□□□□ -0.9
CHD8-207ENST00000554384 ALDH1A1P00352 501 aa9.39□□□□□ -0.91
CHD8-207ENST00000554384 PSME1Q06323 249 aa9.39□□□□□ -0.91
CHD8-207ENST00000554384 PPP1R26Q5T8A7 1209 aaPredicted RBP9.39□□□□□ -0.91
CHD8-207ENST00000554384 CCDC102BQ68D86 513 aa9.39□□□□□ -0.91
CHD8-207ENST00000554384 ZNF784Q8NCA9 323 aaPredicted RBP9.39□□□□□ -0.91
CHD8-207ENST00000554384 ADD1P35611 737 aaKnown RBP9.38□□□□□ -0.91
CHD8-207ENST00000554384 LCE2CQ5TA81 110 aa9.38□□□□□ -0.91
CHD8-207ENST00000554384 LARGE2Q8N3Y3 721 aa9.38□□□□□ -0.91
CHD8-207ENST00000554384 GAS2L2Q8NHY3 880 aa9.38□□□□□ -0.91
CHD8-207ENST00000554384 LILRA1O75019 489 aa9.37□□□□□ -0.91
CHD8-207ENST00000554384 SCNN1AP37088 669 aa9.37□□□□□ -0.91
CHD8-207ENST00000554384 ATP1A2P50993 1020 aa9.37□□□□□ -0.91
CHD8-207ENST00000554384 ERVK-9P63128 1117 aa9.37□□□□□ -0.91
CHD8-207ENST00000554384 CCDC116Q8IYX3 515 aa9.37□□□□□ -0.91
CHD8-207ENST00000554384 MPNDQ8N594 471 aa9.37□□□□□ -0.91
CHD8-207ENST00000554384 OSBPL3Q9H4L5 887 aa9.37□□□□□ -0.91
CHD8-207ENST00000554384 ZBTB7CA1YPR0 619 aa9.36□□□□□ -0.91
CHD8-207ENST00000554384 MYCP01106 439 aaPredicted RBP9.36□□□□□ -0.91
CHD8-207ENST00000554384 CC2D2BQ6DHV5 1058 aa9.36□□□□□ -0.91
CHD8-207ENST00000554384 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.36□□□□□ -0.91
CHD8-207ENST00000554384 TRIM47Q96LD4 638 aa9.36□□□□□ -0.91
CHD8-207ENST00000554384 PDE4CQ08493 712 aa9.35□□□□□ -0.91
CHD8-207ENST00000554384 NR5A1Q13285 461 aa9.35□□□□□ -0.91
CHD8-207ENST00000554384 PHLDB3Q6NSJ2 640 aa9.35□□□□□ -0.91
CHD8-207ENST00000554384 SIX5Q8N196 739 aa9.35□□□□□ -0.91
CHD8-207ENST00000554384 KCTD17Q8N5Z5 321 aa9.35□□□□□ -0.91
CHD8-207ENST00000554384 NNTQ13423 1086 aa9.34□□□□□ -0.91
CHD8-207ENST00000554384 SIRT1Q96EB6 747 aa9.34□□□□□ -0.91
CHD8-207ENST00000554384 PRIMPOLQ96LW4 560 aa9.34□□□□□ -0.91
CHD8-207ENST00000554384 BRD1O95696 1058 aa9.33□□□□□ -0.92
CHD8-207ENST00000554384 SEC13P55735 322 aa9.33□□□□□ -0.92
CHD8-207ENST00000554384 DHX9Q08211 1270 aaKnown RBP9.33□□□□□ -0.92
CHD8-207ENST00000554384 CBLBQ13191 982 aa9.33□□□□□ -0.92
CHD8-207ENST00000554384 TSEN2Q8NCE0 465 aaKnown RBP9.33□□□□□ -0.92
CHD8-207ENST00000554384 ESF1Q9H501 851 aaKnown RBP9.33□□□□□ -0.92
CHD8-207ENST00000554384 WASF2Q9Y6W5 498 aa9.33□□□□□ -0.92
CHD8-207ENST00000554384 TMEM229AB2RXF0 380 aa9.32□□□□□ -0.92
CHD8-207ENST00000554384 PRMT3O60678 531 aa9.32□□□□□ -0.92
CHD8-207ENST00000554384 SCNN1DP51172 638 aa9.32□□□□□ -0.92
CHD8-207ENST00000554384 CCDC125Q86Z20 511 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms