RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 PRKAR2BP31323 418 aa16.29■□□□□ 0.2
SHMT2-209ENST00000553949 SEPT12Q8IYM1 358 aa16.29■□□□□ 0.2
SHMT2-209ENST00000553949 DDB1Q16531 1140 aa16.28■□□□□ 0.2
SHMT2-209ENST00000553949 THSD7AQ9UPZ6 1657 aa16.27■□□□□ 0.2
SHMT2-209ENST00000553949 PLEKHG2Q9H7P9 1386 aa16.27■□□□□ 0.2
SHMT2-209ENST00000553949 EXOC5O00471 708 aa16.27■□□□□ 0.2
SHMT2-209ENST00000553949 PNNQ9H307 717 aaKnown RBP16.27■□□□□ 0.2
SHMT2-209ENST00000553949 RGS12O14924 1447 aa16.27■□□□□ 0.19
SHMT2-209ENST00000553949 AMOTQ4VCS5 1084 aa16.26■□□□□ 0.19
SHMT2-209ENST00000553949 PLEKHO1Q53GL0 409 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-209ENST00000553949 ZCRB1Q8TBF4 217 aaKnown RBP16.26■□□□□ 0.19
SHMT2-209ENST00000553949 PLEKHF1Q96S99 279 aa16.26■□□□□ 0.19
SHMT2-209ENST00000553949 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.26■□□□□ 0.19
SHMT2-209ENST00000553949 SPG7Q9UQ90 795 aa16.26■□□□□ 0.19
SHMT2-209ENST00000553949 TNS2Q63HR2 1409 aa16.26■□□□□ 0.19
SHMT2-209ENST00000553949 WNK3Q9BYP7 1800 aa16.25■□□□□ 0.19
SHMT2-209ENST00000553949 FAM9BQ8IZU0 186 aa16.25■□□□□ 0.19
SHMT2-209ENST00000553949 PHACTR3Q96KR7 559 aa16.25■□□□□ 0.19
SHMT2-209ENST00000553949 CCDC146Q8IYE0 955 aa16.24■□□□□ 0.19
SHMT2-209ENST00000553949 PARP4Q9UKK3 1724 aaKnown RBP16.24■□□□□ 0.19
SHMT2-209ENST00000553949 LRRC37A3O60309 1634 aa16.23■□□□□ 0.19
SHMT2-209ENST00000553949 MAPK8IP3Q9UPT6 1336 aa16.23■□□□□ 0.19
SHMT2-209ENST00000553949 NEFMP07197 916 aa16.23■□□□□ 0.19
SHMT2-209ENST00000553949 PDE3BQ13370 1112 aa16.23■□□□□ 0.19
SHMT2-209ENST00000553949 MTHFSDQ2M296 383 aaKnown RBP16.23■□□□□ 0.19
SHMT2-209ENST00000553949 DDX54Q8TDD1 881 aaKnown RBP16.23■□□□□ 0.19
SHMT2-209ENST00000553949 PCDH11XQ9BZA7 1347 aa16.22■□□□□ 0.19
SHMT2-209ENST00000553949 PCDH11YQ9BZA8 1340 aa16.22■□□□□ 0.19
SHMT2-209ENST00000553949 KRT27Q7Z3Y8 459 aa16.22■□□□□ 0.19
SHMT2-209ENST00000553949 RUNDC1Q96C34 613 aa16.22■□□□□ 0.19
SHMT2-209ENST00000553949 CYP27B1O15528 508 aa16.21■□□□□ 0.19
SHMT2-209ENST00000553949 ZNF530Q6P9A1 599 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-209ENST00000553949 MARCH10Q8NA82 808 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-209ENST00000553949 GAS2L2Q8NHY3 880 aa16.21■□□□□ 0.19
SHMT2-209ENST00000553949 PHKG2P15735 406 aa16.2■□□□□ 0.18
SHMT2-209ENST00000553949 IFNL2Q8IZJ0 200 aa16.2■□□□□ 0.18
SHMT2-209ENST00000553949 PKD1L3Q7Z443 1732 aa16.19■□□□□ 0.18
SHMT2-209ENST00000553949 C1orf141Q5JVX7 400 aa16.19■□□□□ 0.18
SHMT2-209ENST00000553949 NFE2L2Q16236 605 aa16.18■□□□□ 0.18
SHMT2-209ENST00000553949 AKAP4Q5JQC9 854 aa16.18■□□□□ 0.18
SHMT2-209ENST00000553949 APAF1O14727 1248 aa16.17■□□□□ 0.18
SHMT2-209ENST00000553949 NKX1-1Q15270 411 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-209ENST00000553949 FAM182BQ5T319 152 aa16.17■□□□□ 0.18
SHMT2-209ENST00000553949 SHANK3Q9BYB0 1731 aa16.16■□□□□ 0.18
SHMT2-209ENST00000553949 HSP90AB1P08238 724 aaKnown RBP16.16■□□□□ 0.18
SHMT2-209ENST00000553949 TMPOP42166 694 aaKnown RBP16.16■□□□□ 0.18
SHMT2-209ENST00000553949 MAP3K5Q99683 1374 aa16.15■□□□□ 0.18
SHMT2-209ENST00000553949 GNAT3A8MTJ3 354 aa16.15■□□□□ 0.18
SHMT2-209ENST00000553949 RRP7AQ9Y3A4 280 aaKnown RBP16.15■□□□□ 0.18
SHMT2-209ENST00000553949 BCL9O00512 1426 aa16.14■□□□□ 0.17
SHMT2-209ENST00000553949 RIPK4P57078 832 aa16.14■□□□□ 0.17
SHMT2-209ENST00000553949 MPRIPQ6WCQ1 1025 aa16.14■□□□□ 0.17
SHMT2-209ENST00000553949 FAM196AQ6ZSG2 479 aa16.14■□□□□ 0.17
SHMT2-209ENST00000553949 DCAF5Q96JK2 942 aa16.14■□□□□ 0.17
SHMT2-209ENST00000553949 BRWD3Q6RI45 1802 aa16.14■□□□□ 0.17
SHMT2-209ENST00000553949 NEUROD2Q15784 382 aa16.13■□□□□ 0.17
SHMT2-209ENST00000553949 KDM6AO15550 1401 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-209ENST00000553949 SENP3-EIF4A1A0A087X0R7 540 aa16.12■□□□□ 0.17
SHMT2-209ENST00000553949 HTATSF1O43719 755 aaKnown RBP16.12■□□□□ 0.17
SHMT2-209ENST00000553949 RTF1Q92541 710 aaKnown RBP16.12■□□□□ 0.17
SHMT2-209ENST00000553949 RNMTO43148 476 aaKnown RBP16.11■□□□□ 0.17
SHMT2-209ENST00000553949 IL17REQ8NFR9 667 aa16.11■□□□□ 0.17
SHMT2-209ENST00000553949 LGR6Q9HBX8 967 aa16.11■□□□□ 0.17
SHMT2-209ENST00000553949 LMOD3Q0VAK6 560 aa16.1■□□□□ 0.17
SHMT2-209ENST00000553949 DCTN1Q14203 1278 aa16.1■□□□□ 0.17
SHMT2-209ENST00000553949 ILDR2Q71H61 639 aa16.1■□□□□ 0.17
SHMT2-209ENST00000553949 MCM10Q7L590 875 aa16.1■□□□□ 0.17
SHMT2-209ENST00000553949 ACSBG1Q96GR2 724 aa16.1■□□□□ 0.17
SHMT2-209ENST00000553949 TRIM35Q9UPQ4 493 aa16.1■□□□□ 0.17
SHMT2-209ENST00000553949 ERVV-2B6SEH9 535 aa16.09■□□□□ 0.17
SHMT2-209ENST00000553949 PRIM1P49642 420 aaKnown RBP16.09■□□□□ 0.17
SHMT2-209ENST00000553949 KCNQ2O43526 872 aa16.08■□□□□ 0.16
SHMT2-209ENST00000553949 NCBP3Q53F19 620 aaKnown RBP16.08■□□□□ 0.16
SHMT2-209ENST00000553949 SYTL4Q96C24 671 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-209ENST00000553949 EP400Q96L91 3159 aa16.08■□□□□ 0.16
SHMT2-209ENST00000553949 CEMIPQ8WUJ3 1361 aa16.08■□□□□ 0.16
SHMT2-209ENST00000553949 TRIM37O94972 964 aa16.07■□□□□ 0.16
SHMT2-209ENST00000553949 CABP4P57796 275 aa16.07■□□□□ 0.16
SHMT2-209ENST00000553949 CCDC27Q2M243 656 aa16.07■□□□□ 0.16
SHMT2-209ENST00000553949 THUMPD2Q9BTF0 503 aaKnown RBP16.07■□□□□ 0.16
SHMT2-209ENST00000553949 SALL2Q9Y467 1007 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-209ENST00000553949 ADAMTS7Q9UKP4 1686 aa16.06■□□□□ 0.16
SHMT2-209ENST00000553949 PTF1AQ7RTS3 328 aa16.06■□□□□ 0.16
SHMT2-209ENST00000553949 NGEFQ8N5V2 710 aa16.06■□□□□ 0.16
SHMT2-209ENST00000553949 NFATC2IPQ8NCF5 419 aa16.06■□□□□ 0.16
SHMT2-209ENST00000553949 BCL11BQ9C0K0 894 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-209ENST00000553949 SLC52A2Q9HAB3 445 aa16.06■□□□□ 0.16
SHMT2-209ENST00000553949 TMOD3Q9NYL9 352 aa16.06■□□□□ 0.16
SHMT2-209ENST00000553949 TOGARAM1Q9Y4F4 1720 aa16.05■□□□□ 0.16
SHMT2-209ENST00000553949 TEFQ10587 303 aa16.05■□□□□ 0.16
SHMT2-209ENST00000553949 WWC1Q8IX03 1113 aa16.05■□□□□ 0.16
SHMT2-209ENST00000553949 MRC1P22897 1456 aa16.04■□□□□ 0.16
SHMT2-209ENST00000553949 PIGBQ92521 554 aa16.04■□□□□ 0.16
SHMT2-209ENST00000553949 DOT1LQ8TEK3 1739 aa16.04■□□□□ 0.16
SHMT2-209ENST00000553949 DLG5Q8TDM6 1919 aa16.03■□□□□ 0.16
SHMT2-209ENST00000553949 SCN11AQ9UI33 1791 aa16.03■□□□□ 0.16
SHMT2-209ENST00000553949 NHSQ6T4R5 1651 aa16.02■□□□□ 0.16
SHMT2-209ENST00000553949 HNRNPUQ00839 825 aaKnown RBP eCLIP16.02■□□□□ 0.16
SHMT2-209ENST00000553949 CALD1Q05682 793 aaKnown RBP16.01■□□□□ 0.15
SHMT2-209ENST00000553949 TAF7Q15545 349 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms