RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 RNF123Q5XPI4 1314 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 NBPF26B4DH59 902 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 RNF40O75150 1001 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 PPP2R1AP30153 589 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 CC2D1BQ5T0F9 858 aaKnown RBP8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 FBXO31Q5XUX0 539 aaPredicted RBP8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 TMUB1Q9BVT8 246 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 TRAK1Q9UPV9 953 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 NUDCQ9Y266 331 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 ALKQ9UM73 1620 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 A2ML1A8K2U0 1454 aa8.06□□□□□ -1.12
VIPAS39-204ENST00000553576 BLMP54132 1417 aaPredicted RBP8.05□□□□□ -1.12
VIPAS39-204ENST00000553576 MYT1Q01538 1121 aa8.05□□□□□ -1.12
VIPAS39-204ENST00000553576 TMEM132EQ6IEE7 984 aa8.05□□□□□ -1.12
VIPAS39-204ENST00000553576 CARD14Q9BXL6 1004 aa8.05□□□□□ -1.12
VIPAS39-204ENST00000553576 PNMA3Q9UL41 463 aa8.05□□□□□ -1.12
VIPAS39-204ENST00000553576 ZMYM3Q14202 1370 aa8.05□□□□□ -1.12
VIPAS39-204ENST00000553576 NINLQ9Y2I6 1382 aa8.05□□□□□ -1.12
VIPAS39-204ENST00000553576 EVC2Q86UK5 1308 aa8.04□□□□□ -1.12
VIPAS39-204ENST00000553576 DLC1Q96QB1 1528 aa8.04□□□□□ -1.12
VIPAS39-204ENST00000553576 POTECB2RU33 542 aa8.04□□□□□ -1.12
VIPAS39-204ENST00000553576 PTPRMP28827 1452 aa8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 HDGFP51858 240 aaKnown RBP8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 COPS2P61201 443 aa8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 PDIA6Q15084 440 aa8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 PKDCCQ504Y2 493 aa8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 CERKQ8TCT0 537 aa8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 SIRT1Q96EB6 747 aa8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 TULP4Q9NRJ4 1543 aa8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 YTHDC2Q9H6S0 1430 aaKnown RBP8.03□□□□□ -1.12
VIPAS39-204ENST00000553576 CNGB1Q14028 1251 aaPredicted RBP8.02□□□□□ -1.13
VIPAS39-204ENST00000553576 NGEFQ8N5V2 710 aa8.02□□□□□ -1.13
VIPAS39-204ENST00000553576 UBR1Q8IWV7 1749 aa8.02□□□□□ -1.13
VIPAS39-204ENST00000553576 RIMS2Q9UQ26 1411 aa8.02□□□□□ -1.13
VIPAS39-204ENST00000553576 KNDC1Q76NI1 1749 aa8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 POLR3AO14802 1390 aaPredicted RBP8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 NSD2O96028 1365 aa8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 ABCC11Q96J66 1382 aa8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 NRXN3Q9Y4C0 1643 aa8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 DGAT1O75907 488 aa8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 PRIM1P49642 420 aaKnown RBP8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 NUDT18Q6ZVK8 323 aa8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 EMID1Q96A84 441 aaPredicted RBP8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 SLC12A5Q9H2X9 1139 aa8.01□□□□□ -1.13
VIPAS39-204ENST00000553576 ANKRD26Q9UPS8 1709 aa8□□□□□ -1.13
VIPAS39-204ENST00000553576 ATAD2Q6PL18 1390 aa8□□□□□ -1.13
VIPAS39-204ENST00000553576 ANKRD36BQ8N2N9 1353 aa8□□□□□ -1.13
VIPAS39-204ENST00000553576 ZPR1O75312 459 aa8□□□□□ -1.13
VIPAS39-204ENST00000553576 SLC19A1P41440 591 aa8□□□□□ -1.13
VIPAS39-204ENST00000553576 NUTM2DQ5VT03 806 aaPredicted RBP8□□□□□ -1.13
VIPAS39-204ENST00000553576 NECTIN2Q92692 538 aa8□□□□□ -1.13
VIPAS39-204ENST00000553576 ESF1Q9H501 851 aaKnown RBP8□□□□□ -1.13
VIPAS39-204ENST00000553576 PPP4R2Q9NY27 417 aa8□□□□□ -1.13
VIPAS39-204ENST00000553576 ADAMTS8Q9UP79 889 aa8□□□□□ -1.13
VIPAS39-204ENST00000553576 LCE2AQ5TA79 106 aaPredicted RBP7.99□□□□□ -1.13
VIPAS39-204ENST00000553576 MED14O60244 1454 aa7.99□□□□□ -1.13
VIPAS39-204ENST00000553576 CGNL1Q0VF96 1302 aa7.99□□□□□ -1.13
VIPAS39-204ENST00000553576 TNRQ92752 1358 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 NSD3Q9BZ95 1437 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 RNF223E7ERA6 249 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 PRR20EP86478 221 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 PRR20CP86479 221 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 PRR20DP86480 221 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 PRR20BP86481 221 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 PRR20AP86496 221 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 WDR43Q15061 677 aaKnown RBP eCLIP7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 NLRP1Q9C000 1473 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 ZNF521Q96K83 1311 aa7.98□□□□□ -1.13
VIPAS39-204ENST00000553576 TECPR2O15040 1411 aa7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 FAM135BQ49AJ0 1406 aa7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 SPDYE16A6NNV3 312 aaPredicted RBP7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 MLECQ14165 292 aa7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 SWT1Q5T5J6 900 aaKnown RBP7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 SPRYD7Q5W111 196 aa7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 TREML4Q6UXN2 200 aa7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 RBM27Q9P2N5 1060 aaKnown RBP7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 C3P01024 1663 aa7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 SHPRHQ149N8 1683 aa7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 SETD1BQ9UPS6 1966 aaKnown RBP7.97□□□□□ -1.13
VIPAS39-204ENST00000553576 MORC1Q86VD1 984 aa7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 SLF2Q8IX21 1173 aa7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 TRMT2AQ8IZ69 625 aaKnown RBP7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 PRAM1Q96QH2 718 aa7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 CDHR5Q9HBB8 845 aa7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 POGKQ9P215 609 aa7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 FER1L4A9Z1Z3 1794 aa7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 KIF20BQ96Q89 1820 aa7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 TMEM2Q9UHN6 1383 aa7.96□□□□□ -1.14
VIPAS39-204ENST00000553576 CD163L1Q9NR16 1453 aa7.95□□□□□ -1.14
VIPAS39-204ENST00000553576 ZNF598Q86UK7 904 aaKnown RBP7.95□□□□□ -1.14
VIPAS39-204ENST00000553576 CDK19Q9BWU1 502 aa7.95□□□□□ -1.14
VIPAS39-204ENST00000553576 TERF2IPQ9NYB0 399 aa7.95□□□□□ -1.14
VIPAS39-204ENST00000553576 STK26Q9P289 416 aa7.95□□□□□ -1.14
VIPAS39-204ENST00000553576 ARHGAP23Q9P227 1491 aa7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 MAP2P11137 1827 aaKnown RBP7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 SLIT1O75093 1534 aa7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 CPS1P31327 1500 aa7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 BCANQ96GW7 911 aa7.94□□□□□ -1.14
VIPAS39-204ENST00000553576 RCAN3Q9UKA8 241 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms