RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 ANKRD36BQ8N2N9 1353 aa16.64■□□□□ 0.26
SRP54-203ENST00000553544 YBX3P16989 372 aaKnown RBP eCLIP16.64■□□□□ 0.25
SRP54-203ENST00000553544 COL23A1Q86Y22 540 aaPredicted RBP16.64■□□□□ 0.25
SRP54-203ENST00000553544 PUS7Q96PZ0 661 aaKnown RBP16.63■□□□□ 0.25
SRP54-203ENST00000553544 EDC4Q6P2E9 1401 aaKnown RBP16.62■□□□□ 0.25
SRP54-203ENST00000553544 MON2Q7Z3U7 1717 aa16.62■□□□□ 0.25
SRP54-203ENST00000553544 AMPHP49418 695 aa16.62■□□□□ 0.25
SRP54-203ENST00000553544 COG3Q96JB2 828 aa16.62■□□□□ 0.25
SRP54-203ENST00000553544 CD163L1Q9NR16 1453 aa16.61■□□□□ 0.25
SRP54-203ENST00000553544 CD2APQ9Y5K6 639 aa16.61■□□□□ 0.25
SRP54-203ENST00000553544 CLSPNQ9HAW4 1339 aa16.61■□□□□ 0.25
SRP54-203ENST00000553544 HOXC9P31274 260 aa16.6■□□□□ 0.25
SRP54-203ENST00000553544 FLAD1Q8NFF5 587 aa16.6■□□□□ 0.25
SRP54-203ENST00000553544 USP47Q96K76 1375 aa16.6■□□□□ 0.25
SRP54-203ENST00000553544 MSL1Q68DK7 614 aa16.59■□□□□ 0.25
SRP54-203ENST00000553544 PCGF6Q9BYE7 350 aa16.59■□□□□ 0.25
SRP54-203ENST00000553544 GPBP1L1Q9HC44 474 aaPredicted RBP16.59■□□□□ 0.25
SRP54-203ENST00000553544 TIMELESSQ9UNS1 1208 aa16.59■□□□□ 0.25
SRP54-203ENST00000553544 TESK2Q96S53 571 aa16.58■□□□□ 0.24
SRP54-203ENST00000553544 MAP3K19Q56UN5 1328 aa16.58■□□□□ 0.24
SRP54-203ENST00000553544 A0A1W2PP64 1363 aa16.57■□□□□ 0.24
SRP54-203ENST00000553544 NSD2O96028 1365 aa16.57■□□□□ 0.24
SRP54-203ENST00000553544 CGNL1Q0VF96 1302 aa16.57■□□□□ 0.24
SRP54-203ENST00000553544 FBLN1P23142 703 aa16.57■□□□□ 0.24
SRP54-203ENST00000553544 LTN1O94822 1766 aa16.56■□□□□ 0.24
SRP54-203ENST00000553544 ST20-MTHFSA0A0A6YYL1 179 aa16.56■□□□□ 0.24
SRP54-203ENST00000553544 RAPGEF4Q8WZA2 1011 aa16.56■□□□□ 0.24
SRP54-203ENST00000553544 QSER1Q2KHR3 1735 aa16.56■□□□□ 0.24
SRP54-203ENST00000553544 USP54Q70EL1 1684 aa16.56■□□□□ 0.24
SRP54-203ENST00000553544 NBPF6Q5VWK0 638 aa16.55■□□□□ 0.24
SRP54-203ENST00000553544 NBPF4Q96M43 638 aa16.55■□□□□ 0.24
SRP54-203ENST00000553544 COL24A1Q17RW2 1714 aa16.55■□□□□ 0.24
SRP54-203ENST00000553544 ATP10DQ9P241 1426 aa16.54■□□□□ 0.24
SRP54-203ENST00000553544 SLC24A1O60721 1099 aa16.54■□□□□ 0.24
SRP54-203ENST00000553544 HSPA6P17066 643 aa16.54■□□□□ 0.24
SRP54-203ENST00000553544 SHANK3Q9BYB0 1731 aa16.53■□□□□ 0.24
SRP54-203ENST00000553544 TATP17735 454 aaPredicted RBP16.53■□□□□ 0.24
SRP54-203ENST00000553544 ZNF526Q8TF50 670 aaPredicted RBP16.53■□□□□ 0.24
SRP54-203ENST00000553544 MPRIPQ6WCQ1 1025 aa16.52■□□□□ 0.24
SRP54-203ENST00000553544 USHBP1Q8N6Y0 703 aa16.51■□□□□ 0.23
SRP54-203ENST00000553544 SMARCC1Q92922 1105 aaPredicted RBP16.51■□□□□ 0.23
SRP54-203ENST00000553544 RRS1Q15050 365 aaKnown RBP16.5■□□□□ 0.23
SRP54-203ENST00000553544 AK7Q96M32 723 aa16.5■□□□□ 0.23
SRP54-203ENST00000553544 MEGF6O75095 1541 aa16.5■□□□□ 0.23
SRP54-203ENST00000553544 LY75O60449 1722 aa16.49■□□□□ 0.23
SRP54-203ENST00000553544 PCDH11XQ9BZA7 1347 aa16.48■□□□□ 0.23
SRP54-203ENST00000553544 PCDH11YQ9BZA8 1340 aa16.48■□□□□ 0.23
SRP54-203ENST00000553544 FYB1O15117 783 aa16.48■□□□□ 0.23
SRP54-203ENST00000553544 PALLDQ8WX93 1383 aa16.48■□□□□ 0.23
SRP54-203ENST00000553544 FAM208AQ9UK61 1670 aaKnown RBP16.47■□□□□ 0.23
SRP54-203ENST00000553544 HSP90AB2PQ58FF8 381 aa16.47■□□□□ 0.23
SRP54-203ENST00000553544 RTL1A6NKG5 1358 aa16.47■□□□□ 0.23
SRP54-203ENST00000553544 TUBGCP6Q96RT7 1819 aa16.47■□□□□ 0.23
SRP54-203ENST00000553544 IGSF1Q8N6C5 1336 aa16.46■□□□□ 0.23
SRP54-203ENST00000553544 SMG6Q86US8 1419 aaKnown RBP16.46■□□□□ 0.23
SRP54-203ENST00000553544 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.46■□□□□ 0.23
SRP54-203ENST00000553544 GGNBP2Q9H3C7 697 aa16.46■□□□□ 0.23
SRP54-203ENST00000553544 DOT1LQ8TEK3 1739 aa16.45■□□□□ 0.22
SRP54-203ENST00000553544 CYP27B1O15528 508 aa16.45■□□□□ 0.22
SRP54-203ENST00000553544 PHF14O94880 888 aa16.45■□□□□ 0.22
SRP54-203ENST00000553544 WWC3Q9ULE0 1092 aa16.45■□□□□ 0.22
SRP54-203ENST00000553544 ADCY9O60503 1353 aa16.45■□□□□ 0.22
SRP54-203ENST00000553544 TMF1P82094 1093 aa16.44■□□□□ 0.22
SRP54-203ENST00000553544 PIGBQ92521 554 aa16.44■□□□□ 0.22
SRP54-203ENST00000553544 INSRP06213 1382 aa16.43■□□□□ 0.22
SRP54-203ENST00000553544 SSFA2P28290 1259 aa16.43■□□□□ 0.22
SRP54-203ENST00000553544 AMIGO3Q86WK7 504 aa16.43■□□□□ 0.22
SRP54-203ENST00000553544 CCER1Q8TC90 406 aaPredicted RBP16.43■□□□□ 0.22
SRP54-203ENST00000553544 KIF3CO14782 793 aa16.42■□□□□ 0.22
SRP54-203ENST00000553544 APLP1P51693 650 aa16.42■□□□□ 0.22
SRP54-203ENST00000553544 SMIM5Q71RC9 77 aa16.42■□□□□ 0.22
SRP54-203ENST00000553544 NSD3Q9BZ95 1437 aa16.42■□□□□ 0.22
SRP54-203ENST00000553544 LOC102724428A0A0B4J2F2 783 aa16.41■□□□□ 0.22
SRP54-203ENST00000553544 SIK1P57059 783 aa16.41■□□□□ 0.22
SRP54-203ENST00000553544 NKX1-1Q15270 411 aaPredicted RBP16.41■□□□□ 0.22
SRP54-203ENST00000553544 SPG7Q9UQ90 795 aa16.41■□□□□ 0.22
SRP54-203ENST00000553544 CDCA8Q53HL2 280 aa16.39■□□□□ 0.21
SRP54-203ENST00000553544 LINC00116Q8NCU8 138 aa16.39■□□□□ 0.21
SRP54-203ENST00000553544 FLT4P35916 1363 aa16.38■□□□□ 0.21
SRP54-203ENST00000553544 KIF24Q5T7B8 1368 aa16.38■□□□□ 0.21
SRP54-203ENST00000553544 RGPD2P0DJD1 1756 aa16.38■□□□□ 0.21
SRP54-203ENST00000553544 KIF20BQ96Q89 1820 aa16.38■□□□□ 0.21
SRP54-203ENST00000553544 TOMM70O94826 608 aa16.38■□□□□ 0.21
SRP54-203ENST00000553544 ATP6V1AP38606 617 aa16.38■□□□□ 0.21
SRP54-203ENST00000553544 TGFB2P61812 414 aa16.38■□□□□ 0.21
SRP54-203ENST00000553544 TMOD3Q9NYL9 352 aa16.38■□□□□ 0.21
SRP54-203ENST00000553544 C5P01031 1676 aa16.37■□□□□ 0.21
SRP54-203ENST00000553544 GNPATO15228 680 aa16.37■□□□□ 0.21
SRP54-203ENST00000553544 MMP10P09238 476 aa16.37■□□□□ 0.21
SRP54-203ENST00000553544 ASAP1Q9ULH1 1129 aa16.37■□□□□ 0.21
SRP54-203ENST00000553544 PPM1GO15355 546 aaPredicted RBP16.36■□□□□ 0.21
SRP54-203ENST00000553544 TRAPPC3LQ5T215 181 aa16.36■□□□□ 0.21
SRP54-203ENST00000553544 ARHGAP27Q6ZUM4 889 aa16.36■□□□□ 0.21
SRP54-203ENST00000553544 NLGN1Q8N2Q7 840 aa16.36■□□□□ 0.21
SRP54-203ENST00000553544 DNAJC5GQ8N7S2 189 aa16.36■□□□□ 0.21
SRP54-203ENST00000553544 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.36■□□□□ 0.21
SRP54-203ENST00000553544 BCS1LQ9Y276 419 aa16.36■□□□□ 0.21
SRP54-203ENST00000553544 A0A0G2JLW4 131 aa16.35■□□□□ 0.21
SRP54-203ENST00000553544 ITPK1Q13572 414 aa16.35■□□□□ 0.21
SRP54-203ENST00000553544 C4BP0C0L5 1744 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms