RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MORC1Q86VD1 984 aa10.02□□□□□ -0.81
LIMA1-216ENST00000552909 FAM9BQ8IZU0 186 aa10.02□□□□□ -0.81
LIMA1-216ENST00000552909 NBPF4Q96M43 638 aa10.02□□□□□ -0.81
LIMA1-216ENST00000552909 LAS1LQ9Y4W2 734 aaKnown RBP10.02□□□□□ -0.81
LIMA1-216ENST00000552909 ANKRD26Q9UPS8 1709 aa10.02□□□□□ -0.81
LIMA1-216ENST00000552909 DISP2A7MBM2 1401 aa10.01□□□□□ -0.81
LIMA1-216ENST00000552909 RTL1A6NKG5 1358 aa10.01□□□□□ -0.81
LIMA1-216ENST00000552909 FLT4P35916 1363 aa10.01□□□□□ -0.81
LIMA1-216ENST00000552909 DDB1Q16531 1140 aa10.01□□□□□ -0.81
LIMA1-216ENST00000552909 USHBP1Q8N6Y0 703 aa10.01□□□□□ -0.81
LIMA1-216ENST00000552909 INSRP06213 1382 aa10.01□□□□□ -0.81
LIMA1-216ENST00000552909 CCDC184Q52MB2 194 aa10.01□□□□□ -0.81
LIMA1-216ENST00000552909 PARP4Q9UKK3 1724 aaKnown RBP10□□□□□ -0.81
LIMA1-216ENST00000552909 PRKRIP1Q9H875 184 aaPredicted RBP10□□□□□ -0.81
LIMA1-216ENST00000552909 BRPF3Q9ULD4 1205 aa10□□□□□ -0.81
LIMA1-216ENST00000552909 WNK3Q9BYP7 1800 aa10□□□□□ -0.81
LIMA1-216ENST00000552909 NSD2O96028 1365 aa10□□□□□ -0.81
LIMA1-216ENST00000552909 DEFB132Q7Z7B7 95 aa9.99□□□□□ -0.81
LIMA1-216ENST00000552909 MARCH10Q8NA82 808 aaPredicted RBP9.99□□□□□ -0.81
LIMA1-216ENST00000552909 MRS2Q9HD23 443 aa9.99□□□□□ -0.81
LIMA1-216ENST00000552909 LRRC37A3O60309 1634 aa9.99□□□□□ -0.81
LIMA1-216ENST00000552909 SMG6Q86US8 1419 aaKnown RBP9.99□□□□□ -0.81
LIMA1-216ENST00000552909 IL2RBP14784 551 aa9.99□□□□□ -0.81
LIMA1-216ENST00000552909 NPM2Q86SE8 214 aaKnown RBP9.99□□□□□ -0.81
LIMA1-216ENST00000552909 KIF24Q5T7B8 1368 aa9.99□□□□□ -0.81
LIMA1-216ENST00000552909 EXOC5O00471 708 aa9.98□□□□□ -0.81
LIMA1-216ENST00000552909 TRIM37O94972 964 aa9.98□□□□□ -0.81
LIMA1-216ENST00000552909 GSE1Q14687 1217 aa9.98□□□□□ -0.81
LIMA1-216ENST00000552909 PKNOX2Q96KN3 472 aa9.98□□□□□ -0.81
LIMA1-216ENST00000552909 FAM208AQ9UK61 1670 aaKnown RBP9.98□□□□□ -0.81
LIMA1-216ENST00000552909 FAM196AQ6ZSG2 479 aa9.98□□□□□ -0.81
LIMA1-216ENST00000552909 PTF1AQ7RTS3 328 aa9.98□□□□□ -0.81
LIMA1-216ENST00000552909 CDCA7Q9BWT1 371 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-216ENST00000552909 RSPH6AQ9H0K4 717 aa9.98□□□□□ -0.81
LIMA1-216ENST00000552909 RNF123Q5XPI4 1314 aa9.97□□□□□ -0.81
LIMA1-216ENST00000552909 EIF4A2Q14240 407 aaKnown RBP9.97□□□□□ -0.81
LIMA1-216ENST00000552909 EYA1Q99502 592 aa9.97□□□□□ -0.81
LIMA1-216ENST00000552909 KAT6BQ8WYB5 2073 aa9.97□□□□□ -0.81
LIMA1-216ENST00000552909 CCDC125Q86Z20 511 aa9.97□□□□□ -0.81
LIMA1-216ENST00000552909 MEGF6O75095 1541 aa9.96□□□□□ -0.81
LIMA1-216ENST00000552909 MTHFSP49914 203 aa9.96□□□□□ -0.82
LIMA1-216ENST00000552909 DDX54Q8TDD1 881 aaKnown RBP9.95□□□□□ -0.82
LIMA1-216ENST00000552909 NUDCQ9Y266 331 aa9.95□□□□□ -0.82
LIMA1-216ENST00000552909 NPC1L1Q9UHC9 1359 aa9.95□□□□□ -0.82
LIMA1-216ENST00000552909 TNS2Q63HR2 1409 aa9.95□□□□□ -0.82
LIMA1-216ENST00000552909 EN1Q05925 392 aaPredicted RBP9.95□□□□□ -0.82
LIMA1-216ENST00000552909 OVOS2A0A0G2JMS6 1433 aa9.94□□□□□ -0.82
LIMA1-216ENST00000552909 TCERG1O14776 1098 aaKnown RBP9.94□□□□□ -0.82
LIMA1-216ENST00000552909 KCNQ2O43526 872 aa9.94□□□□□ -0.82
LIMA1-216ENST00000552909 SF3B2Q13435 895 aaKnown RBP9.94□□□□□ -0.82
LIMA1-216ENST00000552909 SBF2Q86WG5 1849 aa9.94□□□□□ -0.82
LIMA1-216ENST00000552909 RALBP1Q15311 655 aa9.94□□□□□ -0.82
LIMA1-216ENST00000552909 ZCRB1Q8TBF4 217 aaKnown RBP9.94□□□□□ -0.82
LIMA1-216ENST00000552909 RAPGEF4Q8WZA2 1011 aa9.94□□□□□ -0.82
LIMA1-216ENST00000552909 ACSBG1Q96GR2 724 aa9.94□□□□□ -0.82
LIMA1-216ENST00000552909 TNS1Q9HBL0 1735 aaKnown RBP9.93□□□□□ -0.82
LIMA1-216ENST00000552909 APBA3O96018 575 aa9.93□□□□□ -0.82
LIMA1-216ENST00000552909 TATP17735 454 aaPredicted RBP9.92□□□□□ -0.82
LIMA1-216ENST00000552909 IL13P35225 146 aa9.92□□□□□ -0.82
LIMA1-216ENST00000552909 NCAPD2Q15021 1401 aa9.92□□□□□ -0.82
LIMA1-216ENST00000552909 SHANK3Q9BYB0 1731 aa9.92□□□□□ -0.82
LIMA1-216ENST00000552909 PDE4AP27815 886 aa9.92□□□□□ -0.82
LIMA1-216ENST00000552909 EZH2Q15910 746 aaKnown RBP9.92□□□□□ -0.82
LIMA1-216ENST00000552909 GLIPR1L2Q4G1C9 344 aa9.92□□□□□ -0.82
LIMA1-216ENST00000552909 AEBP1Q8IUX7 1158 aa9.92□□□□□ -0.82
LIMA1-216ENST00000552909 RGPD1P0DJD0 1748 aa9.92□□□□□ -0.82
LIMA1-216ENST00000552909 IGSF1Q8N6C5 1336 aa9.92□□□□□ -0.82
LIMA1-216ENST00000552909 BAG6P46379 1132 aa9.91□□□□□ -0.82
LIMA1-216ENST00000552909 FAM43AQ8N2R8 423 aa9.91□□□□□ -0.82
LIMA1-216ENST00000552909 DDRGK1Q96HY6 314 aa9.91□□□□□ -0.82
LIMA1-216ENST00000552909 BCL9O00512 1426 aa9.91□□□□□ -0.82
LIMA1-216ENST00000552909 CYP27B1O15528 508 aa9.91□□□□□ -0.82
LIMA1-216ENST00000552909 CAMKK2Q96RR4 588 aa9.91□□□□□ -0.82
LIMA1-216ENST00000552909 BCL11BQ9C0K0 894 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-216ENST00000552909 MS4A1P11836 297 aa9.9□□□□□ -0.82
LIMA1-216ENST00000552909 PPP2R1AP30153 589 aa9.9□□□□□ -0.82
LIMA1-216ENST00000552909 BACH2Q9BYV9 841 aa9.9□□□□□ -0.82
LIMA1-216ENST00000552909 SULT6B1Q6IMI4 303 aa9.9□□□□□ -0.83
LIMA1-216ENST00000552909 FRAT1Q92837 279 aaPredicted RBP9.9□□□□□ -0.83
LIMA1-216ENST00000552909 MYBBP1AQ9BQG0 1328 aaKnown RBP9.89□□□□□ -0.83
LIMA1-216ENST00000552909 HMOX1P09601 288 aa9.89□□□□□ -0.83
LIMA1-216ENST00000552909 NFKBIBQ15653 356 aa9.89□□□□□ -0.83
LIMA1-216ENST00000552909 DIAPH1O60610 1272 aaKnown RBP9.88□□□□□ -0.83
LIMA1-216ENST00000552909 PRIM1P49642 420 aaKnown RBP9.88□□□□□ -0.83
LIMA1-216ENST00000552909 PROM2Q8N271 834 aa9.88□□□□□ -0.83
LIMA1-216ENST00000552909 SYTL4Q96C24 671 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-216ENST00000552909 PARD3Q8TEW0 1356 aa9.88□□□□□ -0.83
LIMA1-216ENST00000552909 COL3A1P02461 1466 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-216ENST00000552909 PCDH11XQ9BZA7 1347 aa9.87□□□□□ -0.83
LIMA1-216ENST00000552909 PCDH11YQ9BZA8 1340 aa9.87□□□□□ -0.83
LIMA1-216ENST00000552909 PKD1L3Q7Z443 1732 aa9.87□□□□□ -0.83
LIMA1-216ENST00000552909 PLSCR1O15162 318 aa9.87□□□□□ -0.83
LIMA1-216ENST00000552909 KDRP35968 1356 aa9.87□□□□□ -0.83
LIMA1-216ENST00000552909 SPG7Q9UQ90 795 aa9.87□□□□□ -0.83
LIMA1-216ENST00000552909 NHSQ6T4R5 1651 aa9.86□□□□□ -0.83
LIMA1-216ENST00000552909 U2SURPO15042 1029 aaKnown RBP9.86□□□□□ -0.83
LIMA1-216ENST00000552909 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.86□□□□□ -0.832e-8■■■■■ 37.9
LIMA1-216ENST00000552909 BTAF1O14981 1849 aa9.86□□□□□ -0.83
LIMA1-216ENST00000552909 DOT1LQ8TEK3 1739 aa9.86□□□□□ -0.83
LIMA1-216ENST00000552909 PHKG2P15735 406 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms