RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 CGNL1Q0VF96 1302 aa16.61■□□□□ 0.25
CKAP4-202ENST00000552828 PNPLA7Q6ZV29 1317 aa16.61■□□□□ 0.25
CKAP4-202ENST00000552828 MEGF6O75095 1541 aa16.6■□□□□ 0.25
CKAP4-202ENST00000552828 NBPF6Q5VWK0 638 aa16.6■□□□□ 0.25
CKAP4-202ENST00000552828 NBPF4Q96M43 638 aa16.6■□□□□ 0.25
CKAP4-202ENST00000552828 TMF1P82094 1093 aa16.59■□□□□ 0.25
CKAP4-202ENST00000552828 RRS1Q15050 365 aaKnown RBP16.59■□□□□ 0.25
CKAP4-202ENST00000552828 SYTL4Q96C24 671 aaPredicted RBP16.59■□□□□ 0.25
CKAP4-202ENST00000552828 TFCP2L1Q9NZI6 479 aa16.59■□□□□ 0.25
CKAP4-202ENST00000552828 GGNBP2Q9H3C7 697 aa16.58■□□□□ 0.24
CKAP4-202ENST00000552828 QSER1Q2KHR3 1735 aa16.57■□□□□ 0.24
CKAP4-202ENST00000552828 POLD1P28340 1107 aa16.57■□□□□ 0.24
CKAP4-202ENST00000552828 KCNQ4P56696 695 aa16.57■□□□□ 0.24
CKAP4-202ENST00000552828 GOLGB1Q14789 3259 aaKnown RBP16.57■□□□□ 0.24
CKAP4-202ENST00000552828 COL24A1Q17RW2 1714 aa16.56■□□□□ 0.24
CKAP4-202ENST00000552828 INSRP06213 1382 aa16.56■□□□□ 0.24
CKAP4-202ENST00000552828 KIF24Q5T7B8 1368 aa16.56■□□□□ 0.24
CKAP4-202ENST00000552828 USP47Q96K76 1375 aa16.56■□□□□ 0.24
CKAP4-202ENST00000552828 SHANK3Q9BYB0 1731 aa16.56■□□□□ 0.24
CKAP4-202ENST00000552828 CLSPNQ9HAW4 1339 aa16.55■□□□□ 0.24
CKAP4-202ENST00000552828 CDCA8Q53HL2 280 aa16.55■□□□□ 0.24
CKAP4-202ENST00000552828 RAPGEF4Q8WZA2 1011 aa16.55■□□□□ 0.24
CKAP4-202ENST00000552828 CCNL1Q9UK58 526 aaPredicted RBP16.55■□□□□ 0.24
CKAP4-202ENST00000552828 SMG6Q86US8 1419 aaKnown RBP16.54■□□□□ 0.24
CKAP4-202ENST00000552828 LY75O60449 1722 aa16.54■□□□□ 0.24
CKAP4-202ENST00000552828 HSP90AB2PQ58FF8 381 aa16.54■□□□□ 0.24
CKAP4-202ENST00000552828 USHBP1Q8N6Y0 703 aa16.54■□□□□ 0.24
CKAP4-202ENST00000552828 CCER1Q8TC90 406 aaPredicted RBP16.54■□□□□ 0.24
CKAP4-202ENST00000552828 KAT6BQ8WYB5 2073 aa16.54■□□□□ 0.24
CKAP4-202ENST00000552828 DOT1LQ8TEK3 1739 aa16.53■□□□□ 0.24
CKAP4-202ENST00000552828 FLT4P35916 1363 aa16.53■□□□□ 0.24
CKAP4-202ENST00000552828 TATP17735 454 aaPredicted RBP16.53■□□□□ 0.24
CKAP4-202ENST00000552828 RGPD2P0DJD1 1756 aa16.52■□□□□ 0.24
CKAP4-202ENST00000552828 HMGB2P26583 209 aaKnown RBP16.52■□□□□ 0.24
CKAP4-202ENST00000552828 GPR162Q16538 588 aa16.52■□□□□ 0.24
CKAP4-202ENST00000552828 CARD14Q9BXL6 1004 aa16.52■□□□□ 0.24
CKAP4-202ENST00000552828 PCDH11XQ9BZA7 1347 aa16.51■□□□□ 0.23
CKAP4-202ENST00000552828 PCDH11YQ9BZA8 1340 aa16.51■□□□□ 0.23
CKAP4-202ENST00000552828 COL23A1Q86Y22 540 aaPredicted RBP16.51■□□□□ 0.23
CKAP4-202ENST00000552828 CYP27B1O15528 508 aa16.49■□□□□ 0.23
CKAP4-202ENST00000552828 NLGN2Q8NFZ4 835 aa16.49■□□□□ 0.23
CKAP4-202ENST00000552828 TUBGCP6Q96RT7 1819 aa16.49■□□□□ 0.23
CKAP4-202ENST00000552828 NCAPD2Q15021 1401 aa16.48■□□□□ 0.23
CKAP4-202ENST00000552828 CHD4Q14839 1912 aa16.48■□□□□ 0.23
CKAP4-202ENST00000552828 NKX1-1Q15270 411 aaPredicted RBP16.47■□□□□ 0.23
CKAP4-202ENST00000552828 KLHL34Q8N239 644 aa16.47■□□□□ 0.23
CKAP4-202ENST00000552828 FLAD1Q8NFF5 587 aa16.47■□□□□ 0.23
CKAP4-202ENST00000552828 TIMELESSQ9UNS1 1208 aa16.47■□□□□ 0.23
CKAP4-202ENST00000552828 EMILIN1Q9Y6C2 1016 aa16.47■□□□□ 0.23
CKAP4-202ENST00000552828 PALLDQ8WX93 1383 aa16.47■□□□□ 0.23
CKAP4-202ENST00000552828 MPRIPQ6WCQ1 1025 aa16.46■□□□□ 0.23
CKAP4-202ENST00000552828 WASHC2AQ641Q2 1341 aa16.45■□□□□ 0.22
CKAP4-202ENST00000552828 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
CKAP4-202ENST00000552828 MSH5O43196 834 aa16.45■□□□□ 0.22
CKAP4-202ENST00000552828 C1QTNF8P60827 252 aa16.45■□□□□ 0.22
CKAP4-202ENST00000552828 SMARCC1Q92922 1105 aaPredicted RBP16.45■□□□□ 0.22
CKAP4-202ENST00000552828 GRIN3BO60391 1043 aa16.44■□□□□ 0.22
CKAP4-202ENST00000552828 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.44■□□□□ 0.22
CKAP4-202ENST00000552828 KIF20BQ96Q89 1820 aa16.44■□□□□ 0.22
CKAP4-202ENST00000552828 YBX3P16989 372 aaKnown RBP eCLIP16.43■□□□□ 0.22
CKAP4-202ENST00000552828 PIGBQ92521 554 aa16.43■□□□□ 0.22
CKAP4-202ENST00000552828 CD2APQ9Y5K6 639 aa16.43■□□□□ 0.22
CKAP4-202ENST00000552828 MSL1Q68DK7 614 aa16.42■□□□□ 0.22
CKAP4-202ENST00000552828 PELP1Q8IZL8 1130 aaKnown RBP16.42■□□□□ 0.22
CKAP4-202ENST00000552828 SPG7Q9UQ90 795 aa16.42■□□□□ 0.22
CKAP4-202ENST00000552828 C5P01031 1676 aa16.42■□□□□ 0.22
CKAP4-202ENST00000552828 EYA1Q99502 592 aa16.41■□□□□ 0.22
CKAP4-202ENST00000552828 PKD1L3Q7Z443 1732 aa16.41■□□□□ 0.22
CKAP4-202ENST00000552828 AMIGO3Q86WK7 504 aa16.4■□□□□ 0.22
CKAP4-202ENST00000552828 POLKQ9UBT6 870 aa16.4■□□□□ 0.22
CKAP4-202ENST00000552828 ANKRD26Q9UPS8 1709 aa16.39■□□□□ 0.21
CKAP4-202ENST00000552828 TOGARAM1Q9Y4F4 1720 aa16.39■□□□□ 0.21
CKAP4-202ENST00000552828 PPM1GO15355 546 aaPredicted RBP16.39■□□□□ 0.21
CKAP4-202ENST00000552828 AK7Q96M32 723 aa16.39■□□□□ 0.21
CKAP4-202ENST00000552828 PLEKHG2Q9H7P9 1386 aa16.38■□□□□ 0.21
CKAP4-202ENST00000552828 LOC102724428A0A0B4J2F2 783 aa16.38■□□□□ 0.21
CKAP4-202ENST00000552828 SIK1P57059 783 aa16.38■□□□□ 0.21
CKAP4-202ENST00000552828 C4BP0C0L5 1744 aa16.38■□□□□ 0.21
CKAP4-202ENST00000552828 SENP3-EIF4A1A0A087X0R7 540 aa16.37■□□□□ 0.21
CKAP4-202ENST00000552828 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.37■□□□□ 0.21
CKAP4-202ENST00000552828 GIGYF1O75420 1035 aaPredicted RBP16.37■□□□□ 0.21
CKAP4-202ENST00000552828 PHKG2P15735 406 aa16.37■□□□□ 0.21
CKAP4-202ENST00000552828 SSFA2P28290 1259 aa16.37■□□□□ 0.21
CKAP4-202ENST00000552828 IFNL2Q8IZJ0 200 aa16.37■□□□□ 0.21
CKAP4-202ENST00000552828 TAF1LQ8IZX4 1826 aa16.37■□□□□ 0.21
CKAP4-202ENST00000552828 LINC00116Q8NCU8 138 aa16.36■□□□□ 0.21
CKAP4-202ENST00000552828 TMOD3Q9NYL9 352 aa16.36■□□□□ 0.21
CKAP4-202ENST00000552828 ITGB4P16144 1822 aa16.35■□□□□ 0.21
CKAP4-202ENST00000552828 EIF4A2Q14240 407 aaKnown RBP16.35■□□□□ 0.21
CKAP4-202ENST00000552828 ASAP1Q9ULH1 1129 aa16.35■□□□□ 0.21
CKAP4-202ENST00000552828 MAP2P11137 1827 aaKnown RBP16.34■□□□□ 0.21
CKAP4-202ENST00000552828 ITPK1Q13572 414 aa16.34■□□□□ 0.21
CKAP4-202ENST00000552828 CEP350Q5VT06 3117 aa16.34■□□□□ 0.21
CKAP4-202ENST00000552828 PHF14O94880 888 aa16.33■□□□□ 0.2
CKAP4-202ENST00000552828 SMIM5Q71RC9 77 aa16.33■□□□□ 0.2
CKAP4-202ENST00000552828 ATG3Q9NT62 314 aa16.33■□□□□ 0.2
CKAP4-202ENST00000552828 ATP6V1AP38606 617 aa16.32■□□□□ 0.2
CKAP4-202ENST00000552828 UBR3Q6ZT12 1888 aa16.32■□□□□ 0.2
CKAP4-202ENST00000552828 IGSF1Q8N6C5 1336 aa16.31■□□□□ 0.2
CKAP4-202ENST00000552828 ERVV-2B6SEH9 535 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms